Gene Pden_0469 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPden_0469 
Symbol 
ID4580040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParacoccus denitrificans PD1222 
KingdomBacteria 
Replicon accessionNC_008686 
Strand
Start bp439692 
End bp440477 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content56% 
IMG OID639767785 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_914277 
Protein GI119383221 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1177] ABC-type spermidine/putrescine transport system, permease component II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAGTTT CTGGTCTTTC TTCGATTGTT CTGGCGGCTC TGTGCATCCT TCTGATCGGT 
TTCCTGCTCG CTCCTCTGGC AATCATTCTG GTTTTGTCCT TCACCGCAGA CACCTATTTC
GTCTTTCCGC CTTCCGGCTG GTCGCTGAAA TGGTATGCTG AAGTGATGGC CAGCGCGGAA
TGGCGCAGAT CTTTCGTCAA TTCGATGCTT ATCGCAACTG CGACCGCTCT GTTGGCGACG
GTGTTTGGCA CAATGGCGGC GTTGGGACTG TGGAAGCTAC GATCACCGCT CAAGGGTGTA
ATCTACGCCA CGCTTCTGGC ACCCTCGATG GTGCCGATCG TCATCACTGC GGTCGCGCTG
TTCGCAGCCT TCAGCAGGGT CGGTCTCGTG AATACTTACA GCGGGATAAT CATTGGCCAC
ACTCTGCTGG CGTTGCCCTT CGTTATCCTG TCGGTTGGTG CAGCCCTGCA ATCCTATAAT
CCTAATCTCG GCCGTGCCGC AGCAAGCTTG GGAGGTTCGC CGTTGCGGGT GTTCCTGGGC
GTCATGATGC CCGTTATCGC GCCGGGATTG ATCACGGGGG CGCTGCTTGC TTTCTCGACA
TCTTTCGATG AGGTCGTTCT GGCGTTGTTT CTCGCGTCGC CGGGACAAAG GACCGTTCCG
CGCCAGATCT ATGCGGGAAT CGGGGAAAGT ATCACACCTG CTGTTGCCGC TGCCGCCGCA
CTGGTGATCC TGATGGCGAC GATCCTTATG CTTCTGATTG TTTATCGAAG CCGAACCAGG
ACATGA
 
Protein sequence
MRVSGLSSIV LAALCILLIG FLLAPLAIIL VLSFTADTYF VFPPSGWSLK WYAEVMASAE 
WRRSFVNSML IATATALLAT VFGTMAALGL WKLRSPLKGV IYATLLAPSM VPIVITAVAL
FAAFSRVGLV NTYSGIIIGH TLLALPFVIL SVGAALQSYN PNLGRAAASL GGSPLRVFLG
VMMPVIAPGL ITGALLAFST SFDEVVLALF LASPGQRTVP RQIYAGIGES ITPAVAAAAA
LVILMATILM LLIVYRSRTR T