More than 300 homologs were found in PanDaTox collection
for query gene TDE1071 on replicon NC_002967
Organism: Treponema denticola ATCC 35405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002967  TDE1071  peptide ABC transporter, peptide-binding protein OppA  100 
 
 
591 aa  1211    Treponema denticola ATCC 35405  Bacteria  hitchhiker  0.0000408917  n/a   
 
 
-
 
NC_008262  CPR_2258  solute-binding family 5 protein  25.57 
 
 
579 aa  118  3e-25  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2555  oligopeptide/dipeptide ABC transporter, oligopeptide/dipeptide-binding protein  26.09 
 
 
580 aa  115  2.0000000000000002e-24  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_1768  extracellular solute-binding protein family 5  26.39 
 
 
579 aa  111  4.0000000000000004e-23  Clostridium cellulolyticum H10  Bacteria  decreased coverage  0.0000449992  n/a   
 
 
-
 
NC_010718  Nther_2798  extracellular solute-binding protein family 5  24.48 
 
 
557 aa  105  3e-21  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_0207  extracellular solute-binding protein  27.84 
 
 
567 aa  94  7e-18  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1870  dipeptide transport protein  27.27 
 
 
540 aa  94  8e-18  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0248  oligopeptide ABC transporter, oligopeptide-binding protein, putative  27.73 
 
 
575 aa  93.2  1e-17  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0209  oligopeptide ABC transporter, oligopeptide-binding protein  28.02 
 
 
575 aa  92.8  2e-17  Bacillus cereus E33L  Bacteria  normal  0.019765  n/a   
 
 
-
 
NC_003909  BCE_0247  oligopeptide ABC transporter, substrate-binding protein, putative  27.91 
 
 
567 aa  92  3e-17  Bacillus cereus ATCC 10987  Bacteria  normal  0.460021  n/a   
 
 
-
 
NC_004116  SAG1518  peptide ABC transporter, peptide-binding protein  28.68 
 
 
538 aa  91.3  4e-17  Streptococcus agalactiae 2603V/R  Bacteria  unclonable  0.000374669  n/a   
 
 
-
 
NC_010718  Nther_2645  4-phytase  22.7 
 
 
532 aa  90.9  6e-17  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.292677  normal 
 
 
-
 
NC_011658  BCAH187_A0265  oligopeptide-binding protein OppA  27.39 
 
 
566 aa  89.7  1e-16  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_1000  oligopeptide ABC transporter, oligopeptide-binding protein  26.49 
 
 
529 aa  89  2e-16  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0218  oligopeptide ABC transporter oligopeptide-binding protein  27.14 
 
 
559 aa  89  3e-16  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0106  extracellular solute-binding protein family 5  28.4 
 
 
533 aa  88.6  3e-16  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0909337  n/a   
 
 
-
 
NC_007530  GBAA_0231  oligopeptide ABC transporter oligopeptide-binding protein  27.14 
 
 
555 aa  88.6  3e-16  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0241  putative oligopeptide ABC transporter, oligopeptide-binding protein  27.14 
 
 
575 aa  88.2  4e-16  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011773  BCAH820_0996  oligopeptide ABC transporter, oligopeptide-binding protein  30.13 
 
 
528 aa  87.8  5e-16  Bacillus cereus AH820  Bacteria  n/a    unclonable  4.41324e-61 
 
 
-
 
NC_006274  BCZK0807  oligopeptide ABC transporter, oligopeptide-binding protein  30.13 
 
 
528 aa  87.8  6e-16  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000107652  n/a   
 
 
-
 
NC_013922  Nmag_1438  extracellular solute-binding protein family 5  26.38 
 
 
554 aa  87.4  7e-16  Natrialba magadii ATCC 43099  Archaea  normal  0.3177  n/a   
 
 
-
 
NC_011830  Dhaf_1860  extracellular solute-binding protein family 5  28 
 
 
544 aa  86.7  0.000000000000001  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.44883  n/a   
 
 
-
 
NC_011772  BCG9842_B4386  oligopeptide ABC transporter, oligopeptide-binding protein  25.89 
 
 
529 aa  87  0.000000000000001  Bacillus cereus G9842  Bacteria  normal  0.775513  hitchhiker  3.14637e-22 
 
 
-
 
NC_011769  DvMF_2402  nickel ABC transporter, periplasmic nickel-binding protein  30.19 
 
 
538 aa  86.3  0.000000000000001  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS0858  oligopeptide ABC transporter oligopeptide-binding protein  29.71 
 
 
528 aa  85.9  0.000000000000002  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.00000478589  n/a   
 
 
-
 
NC_009674  Bcer98_0219  extracellular solute-binding protein  27.16 
 
 
575 aa  85.9  0.000000000000002  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0908  oligopeptide ABC transporter oligopeptide-binding protein  29.71 
 
 
528 aa  85.9  0.000000000000002  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  decreased coverage  0.00000813115  n/a   
 
 
-
 
NC_008686  Pden_0810  extracellular solute-binding protein  26.42 
 
 
489 aa  85.9  0.000000000000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0945  oligopeptide ABC transporter, oligopeptide-binding protein  29.29 
 
 
528 aa  85.5  0.000000000000003  Bacillus cereus B4264  Bacteria  hitchhiker  0.00751792  n/a   
 
 
-
 
NC_005957  BT9727_0822  oligopeptide ABC transporter, oligopeptide-binding protein  29.29 
 
 
528 aa  85.1  0.000000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  0.00000000000176887  n/a   
 
 
-
 
NC_013171  Apre_0015  extracellular solute-binding protein family 5  24.94 
 
 
728 aa  84.3  0.000000000000006  Anaerococcus prevotii DSM 20548  Bacteria  unclonable  0.0000000973096  n/a   
 
 
-
 
NC_007412  Ava_C0011  extracellular solute-binding protein  25.08 
 
 
534 aa  84  0.000000000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0146567 
 
 
-
 
NC_010184  BcerKBAB4_0803  extracellular solute-binding protein  29.29 
 
 
529 aa  83.2  0.00000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.0000165149  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0208  extracellular solute-binding protein  27.69 
 
 
575 aa  83.2  0.00000000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A0245  oligopeptide-binding protein OppA  27.49 
 
 
575 aa  82.4  0.00000000000002  Bacillus cereus B4264  Bacteria  normal  0.0551474  n/a   
 
 
-
 
NC_010718  Nther_1596  extracellular solute-binding protein family 5  23.37 
 
 
572 aa  82  0.00000000000003  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0368881  unclonable  7.93881e-23 
 
 
-
 
NC_009668  Oant_2957  4-phytase  24.55 
 
 
520 aa  82  0.00000000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_2761  extracellular solute-binding protein  28.69 
 
 
515 aa  82  0.00000000000003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.364418  normal 
 
 
-
 
NC_012848  Rleg_4682  extracellular solute-binding protein family 5  29.71 
 
 
532 aa  82  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_0477  extracellular solute-binding protein family 5  22.08 
 
 
573 aa  81.3  0.00000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4764  extracellular solute-binding protein  25.88 
 
 
539 aa  80.9  0.00000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE0398  oligopeptide/dipeptide ABC transporter, periplasmic peptide-binding protein  34.46 
 
 
527 aa  80.9  0.00000000000006  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5080  oligopeptide-binding protein OppA  27.19 
 
 
575 aa  80.9  0.00000000000006  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6643  extracellular solute-binding protein family 5  28.81 
 
 
514 aa  80.9  0.00000000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.19211 
 
 
-
 
NC_004311  BRA0786  peptide ABC transporter, periplasmic peptide-binding protein, putative  24.17 
 
 
537 aa  80.1  0.0000000000001  Brucella suis 1330  Bacteria  normal  0.527095  n/a   
 
 
-
 
NC_012880  Dd703_1440  extracellular solute-binding protein family 5  27.83 
 
 
514 aa  80.1  0.0000000000001  Dickeya dadantii Ech703  Bacteria  normal  0.136539  n/a   
 
 
-
 
NC_013204  Elen_1224  extracellular solute-binding protein family 5  25.35 
 
 
544 aa  79  0.0000000000002  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.0137957 
 
 
-
 
NC_011830  Dhaf_0035  extracellular solute-binding protein family 5  27.88 
 
 
546 aa  79.3  0.0000000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000195087  n/a   
 
 
-
 
NC_004578  PSPTO_2576  peptide ABC transporter, periplasmic peptide-binding protein  28.62 
 
 
506 aa  79.3  0.0000000000002  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_16530  ABC-type dipeptide transport system, periplasmic component  28.63 
 
 
510 aa  79  0.0000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.564688 
 
 
-
 
NC_007778  RPB_0132  extracellular solute-binding protein  26.99 
 
 
532 aa  79.3  0.0000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3039  4-phytase  23.86 
 
 
518 aa  79.3  0.0000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_0459  extracellular solute-binding protein  26.34 
 
 
504 aa  79.3  0.0000000000002  Chelativorans sp. BNC1  Bacteria  normal  0.435025  n/a   
 
 
-
 
NC_010718  Nther_2790  extracellular solute-binding protein family 5  26.24 
 
 
527 aa  79  0.0000000000002  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_004116  SAG0187  oligopeptide ABC transporter, oligopeptide-binding protein  28.15 
 
 
542 aa  78.6  0.0000000000003  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_1032  nickel ABC transporter, periplasmic nickel-binding protein  27.38 
 
 
544 aa  78.6  0.0000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  unclonable  0.00000591223  n/a   
 
 
-
 
NC_013171  Apre_0014  extracellular solute-binding protein family 5  25.37 
 
 
714 aa  78.6  0.0000000000003  Anaerococcus prevotii DSM 20548  Bacteria  normal  0.021356  n/a   
 
 
-
 
NC_008148  Rxyl_2424  twin-arginine translocation pathway signal  23.91 
 
 
565 aa  78.6  0.0000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0912792  n/a   
 
 
-
 
NC_010718  Nther_2906  extracellular solute-binding protein family 5  23.94 
 
 
574 aa  78.2  0.0000000000004  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_4354  extracellular solute-binding protein family 5  24.81 
 
 
497 aa  77.8  0.0000000000005  Variovorax paradoxus S110  Bacteria  normal  0.148655  n/a   
 
 
-
 
NC_011368  Rleg2_4796  extracellular solute-binding protein family 5  30.12 
 
 
532 aa  77.8  0.0000000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.478428  normal 
 
 
-
 
NC_011658  BCAH187_A0266  extracellular solute-binding protein family 5  25.26 
 
 
575 aa  77.4  0.0000000000006  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_1652  peptide ABC transporter, periplasmic peptide-binding protein  26.64 
 
 
511 aa  77.8  0.0000000000006  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  0.2387  n/a   
 
 
-
 
NC_007948  Bpro_1443  extracellular solute-binding protein  30.4 
 
 
517 aa  77.4  0.0000000000007  Polaromonas sp. JS666  Bacteria  normal  normal  0.13157 
 
 
-
 
NC_002967  TDE1273  oligopeptide/dipeptide ABC transporter, peptide-binding protein  26.21 
 
 
531 aa  77  0.0000000000008  Treponema denticola ATCC 35405  Bacteria  normal  0.0104885  n/a   
 
 
-
 
NC_005957  BT9727_0205  oligopeptide ABC transporter, oligopeptide-binding protein  26.95 
 
 
575 aa  77  0.0000000000008  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_2769  extracellular solute-binding protein  27.95 
 
 
507 aa  77  0.0000000000008  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.12042  n/a   
 
 
-
 
NC_004311  BRA0409  peptide ABC transporter, periplasmic peptide-binding protein  29.62 
 
 
527 aa  76.3  0.000000000001  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_2267  extracellular solute-binding protein  28.28 
 
 
506 aa  76.3  0.000000000001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.18358  normal  0.347756 
 
 
-
 
NC_013216  Dtox_0360  extracellular solute-binding protein family 5  26.78 
 
 
506 aa  76.6  0.000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0352  peptide ABC transporter, periplasmic peptide-binding protein  29.62 
 
 
527 aa  76.3  0.000000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_4290  extracellular solute-binding protein  25.58 
 
 
530 aa  77  0.000000000001  Verminephrobacter eiseniae EF01-2  Bacteria  hitchhiker  0.00787986  normal 
 
 
-
 
NC_013946  Mrub_1445  extracellular solute-binding protein family 5  25.5 
 
 
495 aa  76.3  0.000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.777078 
 
 
-
 
NC_009455  DehaBAV1_0547  extracellular solute-binding protein  25.42 
 
 
531 aa  76.3  0.000000000001  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_002976  SERP1994  ABC transporter, substrate-binding protein  26.27 
 
 
491 aa  75.5  0.000000000002  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0389  extracellular solute-binding protein  27.09 
 
 
527 aa  75.9  0.000000000002  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000716553  n/a   
 
 
-
 
NC_009712  Mboo_2377  extracellular solute-binding protein  25.67 
 
 
552 aa  75.9  0.000000000002  Candidatus Methanoregula boonei 6A8  Archaea  hitchhiker  0.000449683  normal 
 
 
-
 
NC_007519  Dde_1329  dipeptide ABC transporter, solute-binding protein  25.15 
 
 
532 aa  75.9  0.000000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0310  extracellular solute-binding protein family 5  27.8 
 
 
509 aa  76.3  0.000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_2454  extracellular solute-binding protein  25.08 
 
 
528 aa  76.3  0.000000000002  Desulfotomaculum reducens MI-1  Bacteria  normal  0.269908  n/a   
 
 
-
 
NC_013164  Apre_1771  extracellular solute-binding protein family 5  25.58 
 
 
547 aa  75.5  0.000000000002  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0689  extracellular solute-binding protein family 5  25.58 
 
 
544 aa  75.5  0.000000000003  Anaerococcus prevotii DSM 20548  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0479  4-phytase  25.5 
 
 
535 aa  75.1  0.000000000003  Geobacillus sp. WCH70  Bacteria  normal  0.0187568  n/a   
 
 
-
 
NC_008554  Sfum_1411  extracellular solute-binding protein  23.84 
 
 
559 aa  75.5  0.000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_4726  extracellular solute-binding protein  29.71 
 
 
529 aa  75.1  0.000000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_24440  extracellular solute-binding protein  23.61 
 
 
601 aa  74.7  0.000000000004  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1988  ABC peptide transporter, periplasmic ligand binding protein  23.68 
 
 
505 aa  74.7  0.000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.693495  normal  0.584075 
 
 
-
 
NC_013171  Apre_0387  extracellular solute-binding protein family 5  25.31 
 
 
503 aa  74.7  0.000000000005  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.000000219856  n/a   
 
 
-
 
NC_013173  Dbac_2920  extracellular solute-binding protein family 5  24.2 
 
 
515 aa  74.3  0.000000000005  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_3066  extracellular solute-binding protein family 5  25.09 
 
 
547 aa  74.7  0.000000000005  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007410  Ava_B0216  extracellular solute-binding protein  24.93 
 
 
569 aa  74.3  0.000000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0887  extracellular solute-binding protein  28.41 
 
 
496 aa  73.9  0.000000000008  Acidovorax sp. JS42  Bacteria  normal  0.545524  normal 
 
 
-
 
NC_011992  Dtpsy_0816  extracellular solute-binding protein family 5  28.41 
 
 
496 aa  73.9  0.000000000008  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_2857  extracellular solute-binding protein  27.21 
 
 
542 aa  73.9  0.000000000008  Sinorhizobium medicae WSM419  Bacteria  normal  0.791512  normal  0.700488 
 
 
-
 
NC_013552  DhcVS_512  ABC-type dipeptide/oligopeptide/nickel transport system, periplasmic component  25.56 
 
 
530 aa  73.2  0.00000000001  Dehalococcoides sp. VS  Bacteria  normal  0.135113  n/a   
 
 
-
 
NC_007517  Gmet_1234  extracellular solute-binding protein  25.86 
 
 
538 aa  73.6  0.00000000001  Geobacter metallireducens GS-15  Bacteria  normal  0.871598  normal  0.318753 
 
 
-
 
NC_009668  Oant_3968  extracellular solute-binding protein  24.71 
 
 
537 aa  72.8  0.00000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.252184  n/a   
 
 
-
 
NC_008786  Veis_0139  extracellular solute-binding protein  27.11 
 
 
502 aa  73.6  0.00000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.184027  normal 
 
 
-
 
NC_008148  Rxyl_3028  twin-arginine translocation pathway signal  25.38 
 
 
562 aa  73.6  0.00000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  decreased coverage  0.000374916  n/a   
 
 
-
 
NC_011830  Dhaf_0331  extracellular solute-binding protein family 5  25.98 
 
 
542 aa  73.6  0.00000000001  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000000557928  n/a   
 
 
-
 
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