| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpal_0106 |
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| Symbol | |
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| ID | 6407749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris TIE-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011004 |
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| Strand | - |
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| Start bp | 115283 |
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| End bp | 116884 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642710015 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_001989144 |
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| Protein GI | 192288539 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0909337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGTTGA CGAAGCGATC CTTTGTAGTG GGAGCCCTCG GCGGCATTGC GCTGATGGGT
CTGCCGCTCG AAACCAAAGC GGAAGGTGCG GGGAGCGGCG GAACGCTGGT GATCGGTTCG
ACGCAGGTGC CGCGGCATTT CAACGGCGCC GTCCAGTCCG GTATCGCCAC CGCGCTCCCG
AGCACGCAGA TCTTCGCCAG TCCGCTGCGC TACGACGACA ACTGGAACCC GCAGCCCTAT
CTCGCCGAGT CCTGGGACGT CTCGAAGGAC GGGCTGACGG TGACGCTGAA GCTGGTCAAG
AACGCCACCT TCCACGACGG CAAGCCGGTG ACTTCCGAGG ACGTCGCGTT CTCGATCATG
ACCATCAAGG CCAATCATCC GTTCAAGACG ATGCTGGCCG CGGTCGAGAG CGTCGATACG
CCGGATCCGC ATACGGCGGT GATCAAGCTG GCGCATCCGC ACCCGGCGCT GCTGCTGGCG
ATGTCGCCTG CATTGATGCC GATCCTGCCG AAACACGTCT ATGGCGACGG CCAGGACGTC
AAATCGCATC CGGCCAACCT GAAGCCGATC GGCTCCGGTC CCTACAAGCT CACCGAGTAC
AAGCAGGGCG ACTACTACAC GCTGGAGAAG TTCGACAAAT TCTTCATCCC GGGGCGGCCG
AAGCTCGACA AGATCGTGGT GCGGCTGATT TCGGATCCGA ATGCCCTGAT GGTGTCGGCC
GAGCGCGGCG ATGTTCATAT GGTGCCCTAC TTCACCGGCG TGCGCGACAT TGAGCGGCTG
GAAAAGGCGC CGAACGTCGT CGTCACCGAC AAGGGCTTTG CCGGCATCGG TGCGCTGAAC
TGGCTCGCCT TCAACACCAA GAAGAAGCCG CTCGACGACG TTCGCGTCCG TCAGGCGATC
GGCTATGCGG CGAACCGCGA GTTCATCGTC AAGAAGCTGA TGGGCGGCAA AGCCTTGCCC
TCGACCGGAC CGATCGCGCC GGGCTCGCCG CTGGAAGAGA AGAACGTCGA GCAGTACAAA
TTCGACATCG CCAAGGCCAA CAAGCTGCTC GACGAGGCTG GGCTCAAGCC GGACGGCTCC
GGCGTGCGCA CCACGCTGAC GATCGACTAC ATCCCCGGCA ACGACGAGCA GCAGCGCAAC
GTCGCCGAAT ATCTGCGTTC GGCGCTGAAG CGGGTCGGGA TCAATCTCGA GGTTCGCGCC
GCTCCCGACT TCCCGACCTG GGCCCAGCGT GTCGCCAGTT TCGACTTCGA CATGACGATG
GACACCGTGT TCAACTGGGG CGACCCGGTG ATCGGCGTCG ACCGGACTTA TCTGAGCTCG
AACATCCGCA AGGGCATCAT CTGGTCGAAC ACCCAGCAGT ACGCCAATCC GAAGGTCGAC
GAGATCCTCG GCCAGGCCGC CCAGGAGAGC TCGCCGGACA AGCGCAAGGC GCTGTATTCG
GAGTTCCAGA AGATCGTCGT CGAAGATGCG CCGATCTTCT ACATCAACGC CACTCCGTAC
CACACCTCGT TCGCCAAGGG GCTCGGCAAC CTGCCGACCA CGGTGTGGGG CGTCGCCTCG
CCGCTCGACG AGCTGTACTG GGTGACTCCG CCGAAGAACT GA
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| Protein sequence | MMLTKRSFVV GALGGIALMG LPLETKAEGA GSGGTLVIGS TQVPRHFNGA VQSGIATALP
STQIFASPLR YDDNWNPQPY LAESWDVSKD GLTVTLKLVK NATFHDGKPV TSEDVAFSIM
TIKANHPFKT MLAAVESVDT PDPHTAVIKL AHPHPALLLA MSPALMPILP KHVYGDGQDV
KSHPANLKPI GSGPYKLTEY KQGDYYTLEK FDKFFIPGRP KLDKIVVRLI SDPNALMVSA
ERGDVHMVPY FTGVRDIERL EKAPNVVVTD KGFAGIGALN WLAFNTKKKP LDDVRVRQAI
GYAANREFIV KKLMGGKALP STGPIAPGSP LEEKNVEQYK FDIAKANKLL DEAGLKPDGS
GVRTTLTIDY IPGNDEQQRN VAEYLRSALK RVGINLEVRA APDFPTWAQR VASFDFDMTM
DTVFNWGDPV IGVDRTYLSS NIRKGIIWSN TQQYANPKVD EILGQAAQES SPDKRKALYS
EFQKIVVEDA PIFYINATPY HTSFAKGLGN LPTTVWGVAS PLDELYWVTP PKN
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