| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rxyl_2424 |
|---|
| Symbol | |
|---|
| ID | 4115343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rubrobacter xylanophilus DSM 9941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008148 |
|---|
| Strand | - |
|---|
| Start bp | 2437226 |
|---|
| End bp | 2438923 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638037203 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_645163 |
|---|
| Protein GI | 108805226 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0912792 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAGA TGAGAGGGAT ACGCGGGCTA AGCCGCAGGG AGTTTCTGCA GCTCGGCGGG
GCCGGCCTGG CAGGGGCCGC CCTGCTCGGC GTGGCCGGGT GCGGCGGCGG GGAGACCATC
GGCGGCGGCC AGCAGGGCGG CGGGGGAGAG AACGTCTTCA CCTTCGGGCG CGGCGCGGAC
TCCGTGGGGC TGGACCCCAT AAACGTCACC GACGGCGAGT CGCTCATCGT GTGCCGGCAG
GTGTTCGACG GGCTGCTGGA CTTCAAGCCC GAGACTACGG ACCTCGTGCC GGCGCTGGCC
ACCGAGGTCC CGGAGCCCGA GGAGGGCGGC CGCGTCTACA CCTTCAGGCT GCGCGAGGGC
GTCAGGTTCC ACGACGGGGA GCCCTTCAAC GCCGAGGCCG TGGTCTTCAA CTTCGAGCGC
TGGAAGAACA CGGGCAGCCC CTACCACAAG GGCGGCGGGA GCCAGAGCTC CAACTTCGCC
TACTACGCGG GCATGTTCGG CGGCTTCGAC GACGACTCCG TCATAGAGAG CGTGGAGGCG
GTGGACGAGC GCACCGTCCG GTTCACCCTC AGGGAGGTGC AGGCCCCCTT CCTGCGCAAC
ATAGCCATGA GCCCCTTCGG GATCGCCTCC CCCAAGGCCA TAAGGGAGGA CGTCGAGCGG
TTCTGGAAGA ACCCGGTGGG CACCGGGCCC TTCAAGTTCG TCTCCTGGGA CCAGGGCTCG
ACGGTCAGGC TCGAGAAGAA CCCCGACTGG TGGGGGACCG ACCTGCCCGA GGAGGAGGGC
GGCGGCGGGC CGTTCGTGGA CCGGGTGGTC TTCCGCTCCA TCCCGGACAA CACCGCGCGG
GTCGCGGCGC TCTCCGGCGG CCAGCTCTCC GGGGCCGACG GGCTCACCCC GGACGACGTG
CCGACCATCG AGGAGGACCC CAACCTCAAG GTCATAACCC GGCCGCCGAT GAACATCGGG
TACCTGGCGA TGAACGTCCA GAAGGAGCCC TTCAACGACC GGCGGGTGCG GCTGGCGGTG
GCGCACGCCA TAAACATGCC CGAGATCGTG GAGGCCTTCT TCGGGGACAC CGGGCAGGTG
GCCTCCAACC CCTACCCGCC GACCATCCCG TACTTCCGGG AGGAGACCGA GCCCTACGAG
TACGACCCCG AGCGGGCGCG GCGGCTGCTG CGGGAGGCCG GGCTCGGGGA CGGGTTCGAG
GCCGAGCTGT GGTACATGCC CATCCCGCGC CCTTACATGC CCGACGGCAA GGGCATAGCC
CAGGCCATGC AGCGCGACCT CAAGGAGGTC GGCATCGACG TGAGGCTGGT GACCCGCGAG
TGGGGGACCT ACCTCGAGGA GACCGGCCGG GGGGCCCACG ACATGTGCCT GCTCGGGTGG
ACCGGGGACA ACGGCGACCC GGACAACTTC CTCAACGTGC TGCTCTCCAG CAAGACCGCC
ACGAAGACCG ACGCGCAGAA CGTCGCCTAC TACAAGAACC CGGAGCTCGA CAGGATCCTG
GAGCGGGCCG CCTCCACCAT AGACGAGGAC GAGCGGCGGA GGCTCTACGT CCGGGCGCAG
GAGATCGTCC ACGAAGACGC CCCCTGGGCC CCCATAGCCT ACGCCGAGCC GCCGCTGGGC
TTCCAGAACT CCGTGCGGGG CTACCACCCG AGCCCGACCG GCGGCGAGTC GTTCAACTCC
GTGAAGATCT CCGGGTAA
|
|---|
| Protein sequence | MTEMRGIRGL SRREFLQLGG AGLAGAALLG VAGCGGGETI GGGQQGGGGE NVFTFGRGAD
SVGLDPINVT DGESLIVCRQ VFDGLLDFKP ETTDLVPALA TEVPEPEEGG RVYTFRLREG
VRFHDGEPFN AEAVVFNFER WKNTGSPYHK GGGSQSSNFA YYAGMFGGFD DDSVIESVEA
VDERTVRFTL REVQAPFLRN IAMSPFGIAS PKAIREDVER FWKNPVGTGP FKFVSWDQGS
TVRLEKNPDW WGTDLPEEEG GGGPFVDRVV FRSIPDNTAR VAALSGGQLS GADGLTPDDV
PTIEEDPNLK VITRPPMNIG YLAMNVQKEP FNDRRVRLAV AHAINMPEIV EAFFGDTGQV
ASNPYPPTIP YFREETEPYE YDPERARRLL REAGLGDGFE AELWYMPIPR PYMPDGKGIA
QAMQRDLKEV GIDVRLVTRE WGTYLEETGR GAHDMCLLGW TGDNGDPDNF LNVLLSSKTA
TKTDAQNVAY YKNPELDRIL ERAASTIDED ERRRLYVRAQ EIVHEDAPWA PIAYAEPPLG
FQNSVRGYHP SPTGGESFNS VKISG
|
|---|
| |