| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4354 |
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| Symbol | |
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| ID | 7970545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4599170 |
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| End bp | 4600663 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794943 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_002946231 |
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| Protein GI | 239817321 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.148655 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTCAAAC GACGCACCCT GCTCGCCACC GGCGCCGCAG CCCTGGCTCC TCTCGCGCTG
CCGGCGACCG CCTTCGCGCA GAGAAAGAAG GACGCGCTGG TGCTGGCGCT CACGCTCGAA
CCTACAGGGC TCGACCCCAC GGCCAAGGCT GGCGCCGAGA TTGCGGAGGT GGTGCTCTAC
AACGTCTTCG AGACGCTCAC CAGGATCAAT TCCGATGGCA GCGTTTCGCC CCTGCTGGCC
GAGCGCTGGG AAATCTCGCC CGACCTCAGG ACCTACACCT TCCAGCTGCG GCGCGGCGTG
AAGTTCCACA ACGGCGAGCC CTTCGACGCG AACACCGTCA AGTTCTCGTT CGACCGCGCC
GCCGCGGCCA ACAGCACCAA CAAGGACAAG CGCACCTTCA CCAACATCGC CGCGCAGGTG
GTGGACGCGC ACACGGTGGT GCTGATCAGC AAGGAGATCG AGCCCGAGCT GCTCTTCCTG
CTGGGCCAGG CCTCGGCCAT CATGGTCGAG CCCAGGACGG TGGAGACGAA CGCCGTCAAG
CCCGTGGGCA CAGGCCCTTA CCGGCTCGAC AGCTGGGCCA AGGGATCGGC CATCGTGCTC
GCCAAGTGGG AGGGCTGGCG CAACGCCGAC GCGGTGCAGA TCCGCAAGGC GAGCTTCCGC
TTCATCTCCG AGCCGGCCGC GCAGACGACG GCGCTGCTCT CGGGCGACGT CGACCTGTTC
CCGCACGCGT CGGTCTCGCG CAGCCTGCCG CAGTTCCAGA ACGACAAGCG CTTCCAGGTG
CTGTTCAACG CCTCGCGCGG CAAGACCATC CTGGCCATCA ACAACAGGCG CAAGCCGCTC
GATGACGTGC GCGTGCGCCG CGCCATTGCC ACGGCCATCG ACCGCAAGGC GGTGATCGAG
GCCGCCGCGG ACGGCCGCGG GGTGCCCATC GGCAGCCACT ACGTGCCGGG CGCGCCGGGC
TACGTCGACA CCACGGGCAT CAACCCCTAC AACGTCGAGA AGGCGAAGCA GCTGCTGGCC
GAGGCGGGCG TGAAGAACCC GCTCGAACTC GACCTGGTGC TGCCGCCTCC GCCCTATGCG
CGACAGGGCG GCGAGCTCAT TGCCGCTCAG CTGGCCAAGG TGGGTATCGT CGCAAAGGTC
CAGAACGTCG AGTGGGCGCA GTGGATCAGC GGCACCTACG GCAACAAGAA CTACGACCTC
TCGCTGATCC TGCACGTGGA GCCCTTCGAC CTCGTGAATT ACACCAAGCC CGAGTACTAC
TGGGGCTACC AGTCGGCCAG GTTCAACGAG CTGTTCGACA AGGCGCGCAA CAGCGCGCGC
ACCGCCGACC GGCTGCGCTA CCTGGGCGAT GCGCAGCGCC TGCTGGCCGA GGACGCGGCC
AATGTCTTCC TGTACCAGCC GCAATTCATC ACGGTGGCGG CGCGCGGCCT GCGCGGGCTC
TGGAAGGACA CGCCGATCTT CGTCAACGAC ATCGCCGCGC TCTCCTGGAG CTGA
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| Protein sequence | MLKRRTLLAT GAAALAPLAL PATAFAQRKK DALVLALTLE PTGLDPTAKA GAEIAEVVLY
NVFETLTRIN SDGSVSPLLA ERWEISPDLR TYTFQLRRGV KFHNGEPFDA NTVKFSFDRA
AAANSTNKDK RTFTNIAAQV VDAHTVVLIS KEIEPELLFL LGQASAIMVE PRTVETNAVK
PVGTGPYRLD SWAKGSAIVL AKWEGWRNAD AVQIRKASFR FISEPAAQTT ALLSGDVDLF
PHASVSRSLP QFQNDKRFQV LFNASRGKTI LAINNRRKPL DDVRVRRAIA TAIDRKAVIE
AAADGRGVPI GSHYVPGAPG YVDTTGINPY NVEKAKQLLA EAGVKNPLEL DLVLPPPPYA
RQGGELIAAQ LAKVGIVAKV QNVEWAQWIS GTYGNKNYDL SLILHVEPFD LVNYTKPEYY
WGYQSARFNE LFDKARNSAR TADRLRYLGD AQRLLAEDAA NVFLYQPQFI TVAARGLRGL
WKDTPIFVND IAALSWS
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