Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dred_0389 |
Symbol | |
ID | 4956946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfotomaculum reducens MI-1 |
Kingdom | Bacteria |
Replicon accession | NC_009253 |
Strand | + |
Start bp | 421425 |
End bp | 423008 |
Gene Length | 1584 bp |
Protein Length | 527 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640179558 |
Product | extracellular solute-binding protein |
Protein accession | YP_001111762 |
Protein GI | 134298266 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000716553 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAATA AAAGAACGAA ATTAATGGTA GCCATTGTGT TGCTGGTCTT TGCACTTACG GTTGTTACAG GTTGCGGAGG TGGAAATCAA GGAGGTTCCG GCGGGCAGAA GGCTAAAATT GCCTATTATG CCTTTAACAG TGAACCAGTG CTGGATTGGG ATCCCAGTGT GGAGTTTTCC AATGGTATCG CAGTTATGAA CAACATTTAT GAAACCCTTT TAAGGTTTGA TCCGGAGCAA AACAAAATCA TTCCTATTCT TGCAGAGGAA TATTCAAAAT CAGAAGATGG TTTGACCTGG GTTTTCAAAC TGAGAAAAGG TGTTAAATTC CATGACGGAA CTGAAATGAA AGCCGATGCA GTTAAGTATT CCATTGAGAG AACAAAGAAA ATAAACAAAG GTGCAGCCTA TATTTGGGAT TCCGTAAAGG AAATCAACAT CAAGGATGAT TACACAGTTG AGTTTAAATT GAGCTATGCG GCCCCGGTGG ATTTAATTGC CAGTTGTGGT TATGCAGCCT TCATTATGTC ACCAAAGATT GCTGAGCAGC CCGAAGGTTG GTTCTCCCAG GGAAATGAAG CAGGTACCGG CCCCTATAAG CTGCAAAGCA CTAAGAAGGG CGAAGAAGTG GTACTGACTC GCTTTGATGA GTATTGGAAA GGCTGGGAAG GCAACCACTT TGATAAGGTG ATTGTAAAGA AGGTTCCAGA AACTGCTTCC AGACGTCAGT TGGTTGAAAA GGGTGAGGCA GATGTAACCA TTGAACTTCC CTATGAAGAC GTTGAAGCGC TGAAGAACAA TGCCGACGTA CAAATACTGG ATGCCCCTGC TTTCCAAAAC CTATTCTTCT GCTTTAATAC AGAAAAGGAA CCGTTAAATA ATAAACTTGT AAGGCAGGCC CTATCCTACG CTTTCCCCTA TGAAGATGTA GTGAAATATG CCATGGGCAA CTATGCTACC CAGGCCAAGG GGCCCATACC TTATGGGCAC TGGGGACATG GAGACAACCT GTTCCAGTAT AAGCACGATT TGAATAAAGC AAAGGAATTG TTGGCCCAGG CGGGCATCCC CAATGGTGGC TTCAAACTTC TCTTAACCTA CATGTCCGGG GATGAAGCTG AAAAGAAAAC AGCGGAGCTC TATAAAGCGG AACTGGCTAA GCTGAATATT GAATTGGAAG TAAGGGGCAT GCCCTGGGAT AGTCAGTGGG AGTTGGCCAA GAGCAAAGAT GCCAAGAGCA GACAAGATAT CTTAGGTATG TACTGGTGGG TGGATTATGC CAGCCCCTAC AGTTGGTTGT ACAGTCTATA TCACTCCGAG AAGGATCCAT TGTTTAACTT AAACTATTAT AAAAACGAAA AGTTTGATCA GTTAATTGAT GAAGCCAATA GTAAGAGCGG TATTGACAGA GCTGCGGCTG AACAAATGTA TATTGAAGCG CAAAAGATGC TAATTGAAGA TGCACCGTCC ATTTTCACCT ATGATAAGAA ATATGTTTGG GTGCATAATA AGCAATTCAA AGGTCTCAAG AGCAATGCAG CCTACCCCAA TACCATATTC TTTTATGATA CTTACCGTGA ATAA
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Protein sequence | MSNKRTKLMV AIVLLVFALT VVTGCGGGNQ GGSGGQKAKI AYYAFNSEPV LDWDPSVEFS NGIAVMNNIY ETLLRFDPEQ NKIIPILAEE YSKSEDGLTW VFKLRKGVKF HDGTEMKADA VKYSIERTKK INKGAAYIWD SVKEINIKDD YTVEFKLSYA APVDLIASCG YAAFIMSPKI AEQPEGWFSQ GNEAGTGPYK LQSTKKGEEV VLTRFDEYWK GWEGNHFDKV IVKKVPETAS RRQLVEKGEA DVTIELPYED VEALKNNADV QILDAPAFQN LFFCFNTEKE PLNNKLVRQA LSYAFPYEDV VKYAMGNYAT QAKGPIPYGH WGHGDNLFQY KHDLNKAKEL LAQAGIPNGG FKLLLTYMSG DEAEKKTAEL YKAELAKLNI ELEVRGMPWD SQWELAKSKD AKSRQDILGM YWWVDYASPY SWLYSLYHSE KDPLFNLNYY KNEKFDQLID EANSKSGIDR AAAEQMYIEA QKMLIEDAPS IFTYDKKYVW VHNKQFKGLK SNAAYPNTIF FYDTYRE
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