Gene Dred_0389 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0389 
Symbol 
ID4956946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp421425 
End bp423008 
Gene Length1584 bp 
Protein Length527 aa 
Translation table11 
GC content43% 
IMG OID640179558 
Productextracellular solute-binding protein 
Protein accessionYP_001111762 
Protein GI134298266 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000716553 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAATA AAAGAACGAA ATTAATGGTA GCCATTGTGT TGCTGGTCTT TGCACTTACG 
GTTGTTACAG GTTGCGGAGG TGGAAATCAA GGAGGTTCCG GCGGGCAGAA GGCTAAAATT
GCCTATTATG CCTTTAACAG TGAACCAGTG CTGGATTGGG ATCCCAGTGT GGAGTTTTCC
AATGGTATCG CAGTTATGAA CAACATTTAT GAAACCCTTT TAAGGTTTGA TCCGGAGCAA
AACAAAATCA TTCCTATTCT TGCAGAGGAA TATTCAAAAT CAGAAGATGG TTTGACCTGG
GTTTTCAAAC TGAGAAAAGG TGTTAAATTC CATGACGGAA CTGAAATGAA AGCCGATGCA
GTTAAGTATT CCATTGAGAG AACAAAGAAA ATAAACAAAG GTGCAGCCTA TATTTGGGAT
TCCGTAAAGG AAATCAACAT CAAGGATGAT TACACAGTTG AGTTTAAATT GAGCTATGCG
GCCCCGGTGG ATTTAATTGC CAGTTGTGGT TATGCAGCCT TCATTATGTC ACCAAAGATT
GCTGAGCAGC CCGAAGGTTG GTTCTCCCAG GGAAATGAAG CAGGTACCGG CCCCTATAAG
CTGCAAAGCA CTAAGAAGGG CGAAGAAGTG GTACTGACTC GCTTTGATGA GTATTGGAAA
GGCTGGGAAG GCAACCACTT TGATAAGGTG ATTGTAAAGA AGGTTCCAGA AACTGCTTCC
AGACGTCAGT TGGTTGAAAA GGGTGAGGCA GATGTAACCA TTGAACTTCC CTATGAAGAC
GTTGAAGCGC TGAAGAACAA TGCCGACGTA CAAATACTGG ATGCCCCTGC TTTCCAAAAC
CTATTCTTCT GCTTTAATAC AGAAAAGGAA CCGTTAAATA ATAAACTTGT AAGGCAGGCC
CTATCCTACG CTTTCCCCTA TGAAGATGTA GTGAAATATG CCATGGGCAA CTATGCTACC
CAGGCCAAGG GGCCCATACC TTATGGGCAC TGGGGACATG GAGACAACCT GTTCCAGTAT
AAGCACGATT TGAATAAAGC AAAGGAATTG TTGGCCCAGG CGGGCATCCC CAATGGTGGC
TTCAAACTTC TCTTAACCTA CATGTCCGGG GATGAAGCTG AAAAGAAAAC AGCGGAGCTC
TATAAAGCGG AACTGGCTAA GCTGAATATT GAATTGGAAG TAAGGGGCAT GCCCTGGGAT
AGTCAGTGGG AGTTGGCCAA GAGCAAAGAT GCCAAGAGCA GACAAGATAT CTTAGGTATG
TACTGGTGGG TGGATTATGC CAGCCCCTAC AGTTGGTTGT ACAGTCTATA TCACTCCGAG
AAGGATCCAT TGTTTAACTT AAACTATTAT AAAAACGAAA AGTTTGATCA GTTAATTGAT
GAAGCCAATA GTAAGAGCGG TATTGACAGA GCTGCGGCTG AACAAATGTA TATTGAAGCG
CAAAAGATGC TAATTGAAGA TGCACCGTCC ATTTTCACCT ATGATAAGAA ATATGTTTGG
GTGCATAATA AGCAATTCAA AGGTCTCAAG AGCAATGCAG CCTACCCCAA TACCATATTC
TTTTATGATA CTTACCGTGA ATAA
 
Protein sequence
MSNKRTKLMV AIVLLVFALT VVTGCGGGNQ GGSGGQKAKI AYYAFNSEPV LDWDPSVEFS 
NGIAVMNNIY ETLLRFDPEQ NKIIPILAEE YSKSEDGLTW VFKLRKGVKF HDGTEMKADA
VKYSIERTKK INKGAAYIWD SVKEINIKDD YTVEFKLSYA APVDLIASCG YAAFIMSPKI
AEQPEGWFSQ GNEAGTGPYK LQSTKKGEEV VLTRFDEYWK GWEGNHFDKV IVKKVPETAS
RRQLVEKGEA DVTIELPYED VEALKNNADV QILDAPAFQN LFFCFNTEKE PLNNKLVRQA
LSYAFPYEDV VKYAMGNYAT QAKGPIPYGH WGHGDNLFQY KHDLNKAKEL LAQAGIPNGG
FKLLLTYMSG DEAEKKTAEL YKAELAKLNI ELEVRGMPWD SQWELAKSKD AKSRQDILGM
YWWVDYASPY SWLYSLYHSE KDPLFNLNYY KNEKFDQLID EANSKSGIDR AAAEQMYIEA
QKMLIEDAPS IFTYDKKYVW VHNKQFKGLK SNAAYPNTIF FYDTYRE