More than 300 homologs were found in PanDaTox collection
for query gene Ppha_2686 on replicon NC_011060
Organism: Pelodictyon phaeoclathratiforme BU-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011060  Ppha_2686  short-chain dehydrogenase/reductase SDR  100 
 
 
258 aa  524  1e-148  Pelodictyon phaeoclathratiforme BU-1  Bacteria  hitchhiker  0.00673203  n/a   
 
 
-
 
NC_008639  Cpha266_0226  short-chain dehydrogenase/reductase SDR  59.38 
 
 
259 aa  315  6e-85  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.996462  n/a   
 
 
-
 
NC_007512  Plut_1969  short chain dehydrogenase/reductase family oxidoreductase  60.78 
 
 
260 aa  308  5.9999999999999995e-83  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0281  short-chain dehydrogenase/reductase SDR  56.08 
 
 
255 aa  293  2e-78  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000634692  hitchhiker  0.00117931 
 
 
-
 
NC_010803  Clim_0189  short-chain dehydrogenase/reductase SDR  58.5 
 
 
267 aa  292  4e-78  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.00000709968  n/a   
 
 
-
 
NC_007514  Cag_0350  short chain dehydrogenase/reductase family oxidoreductase  54.9 
 
 
259 aa  272  3e-72  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  0.000771311  n/a   
 
 
-
 
NC_010831  Cphamn1_0312  short-chain dehydrogenase/reductase SDR  51.95 
 
 
261 aa  269  2.9999999999999997e-71  Chlorobium phaeobacteroides BS1  Bacteria  hitchhiker  0.0000113464  decreased coverage  0.000120518 
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  42.06 
 
 
261 aa  176  2e-43  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_1889  short-chain dehydrogenase/reductase SDR  40.47 
 
 
264 aa  177  2e-43  Cyanothece sp. PCC 7425  Bacteria  normal  0.0188274  normal 
 
 
-
 
NC_013517  Sterm_2330  short-chain dehydrogenase/reductase SDR  41.34 
 
 
257 aa  176  2e-43  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000620196  n/a   
 
 
-
 
NC_011729  PCC7424_4642  short-chain dehydrogenase/reductase SDR  40.89 
 
 
264 aa  177  2e-43  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000179752 
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  42 
 
 
261 aa  175  6e-43  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_006369  lpl1378  hypothetical protein  37.85 
 
 
259 aa  174  9.999999999999999e-43  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_006368  lpp1382  hypothetical protein  37.85 
 
 
259 aa  172  5e-42  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  41.22 
 
 
271 aa  171  1e-41  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  38.49 
 
 
264 aa  170  2e-41  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
NC_007413  Ava_1011  Short-chain dehydrogenase/reductase SDR  43.65 
 
 
258 aa  165  8e-40  Anabaena variabilis ATCC 29413  Bacteria  normal  0.968961  hitchhiker  0.00922057 
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  40.65 
 
 
264 aa  164  1.0000000000000001e-39  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_0906  short-chain dehydrogenase/reductase SDR  38.31 
 
 
273 aa  163  2.0000000000000002e-39  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.127379  n/a   
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  38.49 
 
 
263 aa  162  6e-39  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  42.69 
 
 
259 aa  162  6e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1536  short-chain dehydrogenase/reductase SDR  37.1 
 
 
260 aa  162  6e-39  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_1836  short-chain dehydrogenase/reductase SDR  37.8 
 
 
260 aa  160  1e-38  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  39.26 
 
 
267 aa  160  1e-38  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_3621  short-chain dehydrogenase  35.18 
 
 
258 aa  159  3e-38  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_2681  short-chain dehydrogenase/reductase SDR  39.04 
 
 
261 aa  159  3e-38  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2448  short-chain dehydrogenase/reductase SDR  43.75 
 
 
257 aa  159  5e-38  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008392  Bamb_6118  short-chain dehydrogenase/reductase SDR  38.58 
 
 
275 aa  157  2e-37  Burkholderia ambifaria AMMD  Bacteria  normal  0.304156  normal  0.200034 
 
 
-
 
NC_014248  Aazo_3911  short-chain dehydrogenase/reductase SDR  38 
 
 
267 aa  155  6e-37  'Nostoc azollae' 0708  Bacteria  normal  0.322734  n/a   
 
 
-
 
NC_007777  Francci3_0351  short-chain dehydrogenase/reductase SDR  38.96 
 
 
291 aa  154  1e-36  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2321  dehydrogenase/reductase oxidoreductase protein  37.65 
 
 
275 aa  153  2e-36  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.195083 
 
 
-
 
NC_013421  Pecwa_1556  short-chain dehydrogenase/reductase SDR  39.04 
 
 
261 aa  153  2.9999999999999998e-36  Pectobacterium wasabiae WPP163  Bacteria  normal  0.596662  n/a   
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  42.11 
 
 
258 aa  152  4e-36  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  40 
 
 
253 aa  152  7e-36  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  41.2 
 
 
250 aa  151  1e-35  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_008726  Mvan_3113  short-chain dehydrogenase/reductase SDR  36.78 
 
 
262 aa  150  1e-35  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.999856 
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  37.6 
 
 
262 aa  149  3e-35  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_3131  short-chain dehydrogenase/reductase SDR  34.65 
 
 
258 aa  149  3e-35  Pedobacter heparinus DSM 2366  Bacteria  normal  0.859893  normal 
 
 
-
 
NC_004578  PSPTO_4275  oxidoreductase, short-chain dehydrogenase/reductase family  40.44 
 
 
261 aa  149  4e-35  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2044  short-chain dehydrogenase/reductase SDR  37.9 
 
 
260 aa  148  9e-35  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.756544 
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  38.87 
 
 
259 aa  148  9e-35  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_013132  Cpin_4109  short-chain dehydrogenase/reductase SDR  39.01 
 
 
269 aa  148  9e-35  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.00421935 
 
 
-
 
NC_008262  CPR_2585  short chain dehydrogenase/reductase family oxidoreductase  33.59 
 
 
257 aa  148  1.0000000000000001e-34  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  34.66 
 
 
256 aa  147  2.0000000000000003e-34  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  37.21 
 
 
266 aa  147  2.0000000000000003e-34  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_010571  Oter_2864  short-chain dehydrogenase/reductase SDR  36.51 
 
 
289 aa  145  4.0000000000000006e-34  Opitutus terrae PB90-1  Bacteria  normal  normal  0.327148 
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  37.75 
 
 
263 aa  145  6e-34  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_009784  VIBHAR_05256  short-chain dehydrogenase/reductase SDR  43.24 
 
 
259 aa  145  7.0000000000000006e-34  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009832  Spro_3183  short-chain dehydrogenase/reductase SDR  39.56 
 
 
260 aa  145  8.000000000000001e-34  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_2906  short chain dehydrogenase/reductase family oxidoreductase  34.26 
 
 
257 aa  145  9e-34  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6469  short-chain dehydrogenase/reductase SDR  40.08 
 
 
263 aa  144  2e-33  Frankia sp. EAN1pec  Bacteria  normal  normal  0.0477636 
 
 
-
 
NC_009077  Mjls_0469  short-chain dehydrogenase/reductase SDR  40.74 
 
 
258 aa  144  2e-33  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_6133  short-chain dehydrogenase/reductase SDR  41.05 
 
 
263 aa  143  3e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009675  Anae109_3974  short-chain dehydrogenase/reductase SDR  36.55 
 
 
264 aa  143  3e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.036497  normal  0.609933 
 
 
-
 
NC_009953  Sare_1619  short-chain dehydrogenase/reductase SDR  46.6 
 
 
271 aa  143  3e-33  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.61951 
 
 
-
 
NC_010511  M446_3398  short-chain dehydrogenase/reductase SDR  44.68 
 
 
265 aa  142  5e-33  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.162957 
 
 
-
 
NC_013165  Shel_18580  short-chain dehydrogenase of unknown substrate specificity  35.48 
 
 
258 aa  141  8e-33  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.489964  normal 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  36.86 
 
 
266 aa  141  9e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  37.11 
 
 
258 aa  141  9.999999999999999e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  45.18 
 
 
258 aa  141  9.999999999999999e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  37.89 
 
 
258 aa  140  9.999999999999999e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_4202  short-chain dehydrogenase/reductase SDR  39.47 
 
 
344 aa  141  9.999999999999999e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1833  short-chain dehydrogenase/reductase SDR  38 
 
 
252 aa  141  9.999999999999999e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  0.092001  n/a   
 
 
-
 
NC_008726  Mvan_3324  short-chain dehydrogenase/reductase SDR  36.08 
 
 
269 aa  141  9.999999999999999e-33  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.377978 
 
 
-
 
NC_013203  Apar_0041  short-chain dehydrogenase/reductase SDR  37.5 
 
 
257 aa  140  1.9999999999999998e-32  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2063  short-chain dehydrogenase  35.71 
 
 
261 aa  140  1.9999999999999998e-32  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0247773  normal  0.17766 
 
 
-
 
NC_011666  Msil_0129  short-chain dehydrogenase/reductase SDR  38.87 
 
 
271 aa  140  1.9999999999999998e-32  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008009  Acid345_1611  short-chain dehydrogenase/reductase SDR  34.82 
 
 
262 aa  140  3e-32  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0480  short-chain dehydrogenase/reductase SDR  40.33 
 
 
258 aa  140  3e-32  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  34.51 
 
 
263 aa  140  3e-32  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0491  short-chain dehydrogenase/reductase SDR  40.33 
 
 
258 aa  140  3e-32  Mycobacterium sp. KMS  Bacteria  normal  normal  0.354983 
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  35.18 
 
 
321 aa  139  3.9999999999999997e-32  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_2278  short-chain dehydrogenase/reductase SDR  37.78 
 
 
260 aa  139  4.999999999999999e-32  Enterobacter sp. 638  Bacteria  normal  normal  0.161761 
 
 
-
 
NC_013421  Pecwa_2365  short-chain dehydrogenase/reductase SDR  37.93 
 
 
257 aa  139  6e-32  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_5270  short-chain dehydrogenase/reductase SDR  40.44 
 
 
262 aa  139  6e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4200  short-chain dehydrogenase/reductase SDR  37.66 
 
 
271 aa  138  7.999999999999999e-32  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0497  short-chain dehydrogenase/reductase SDR  33.92 
 
 
360 aa  138  7.999999999999999e-32  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0153  short-chain dehydrogenase/reductase SDR  38.67 
 
 
262 aa  138  7.999999999999999e-32  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.418257  normal  0.135019 
 
 
-
 
NC_009439  Pmen_1100  short-chain dehydrogenase/reductase SDR  39.04 
 
 
264 aa  138  7.999999999999999e-32  Pseudomonas mendocina ymp  Bacteria  normal  0.576998  normal  0.0165353 
 
 
-
 
NC_013132  Cpin_3329  short-chain dehydrogenase/reductase SDR  35.32 
 
 
256 aa  138  7.999999999999999e-32  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.227726  hitchhiker  0.00265893 
 
 
-
 
NC_010085  Nmar_0044  short-chain dehydrogenase/reductase SDR  36.56 
 
 
264 aa  138  8.999999999999999e-32  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_008391  Bamb_4735  short-chain dehydrogenase/reductase SDR  39.73 
 
 
262 aa  138  8.999999999999999e-32  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_1178  short-chain dehydrogenase/reductase SDR  38.89 
 
 
259 aa  137  1e-31  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.82399  normal 
 
 
-
 
NC_013235  Namu_5163  short-chain dehydrogenase/reductase SDR  40.26 
 
 
258 aa  138  1e-31  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  37 
 
 
264 aa  137  2e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_013515  Smon_1006  short-chain dehydrogenase/reductase SDR  33.2 
 
 
257 aa  137  2e-31  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_4423  short-chain dehydrogenase/reductase SDR  37.74 
 
 
276 aa  137  2e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.235547  n/a   
 
 
-
 
NC_012912  Dd1591_2059  short-chain dehydrogenase/reductase SDR  36.61 
 
 
260 aa  136  3.0000000000000003e-31  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3794  short-chain dehydrogenase/reductase SDR  32.94 
 
 
262 aa  136  3.0000000000000003e-31  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2692  short-chain dehydrogenase/reductase SDR  36.51 
 
 
267 aa  136  4e-31  Thermomonospora curvata DSM 43183  Bacteria  decreased coverage  0.0000430049  n/a   
 
 
-
 
NC_009664  Krad_2814  short-chain dehydrogenase/reductase SDR  36.84 
 
 
260 aa  135  5e-31  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.563613  normal 
 
 
-
 
NC_009656  PSPA7_5551  putative short-chain dehydrogenase  38.7 
 
 
265 aa  135  6.0000000000000005e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0209  short-chain dehydrogenase/reductase SDR  38.67 
 
 
262 aa  135  6.0000000000000005e-31  Methylobacterium extorquens PA1  Bacteria  normal  0.128983  normal 
 
 
-
 
NC_009485  BBta_5145  putative Short-chain dehydrogenase/reductase SDR  35.65 
 
 
267 aa  135  7.000000000000001e-31  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.645114  normal  0.0551529 
 
 
-
 
NC_008726  Mvan_0661  short-chain dehydrogenase/reductase SDR  40.49 
 
 
258 aa  135  9e-31  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.381329 
 
 
-
 
NC_013440  Hoch_3300  short-chain dehydrogenase/reductase SDR  36.07 
 
 
272 aa  134  1.9999999999999998e-30  Haliangium ochraceum DSM 14365  Bacteria  normal  0.605078  normal  0.514892 
 
 
-
 
NC_012850  Rleg_3582  short-chain dehydrogenase/reductase SDR  38.03 
 
 
265 aa  134  1.9999999999999998e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.15353 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  38.62 
 
 
283 aa  134  1.9999999999999998e-30  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_1475  short-chain dehydrogenase/reductase SDR  33.72 
 
 
269 aa  133  3.9999999999999996e-30  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5585  short-chain dehydrogenase/reductase SDR  39.27 
 
 
265 aa  132  3.9999999999999996e-30  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.892025  normal  0.853623 
 
 
-
 
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