More than 300 homologs were found in PanDaTox collection
for query gene PC1_2681 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_2681  short-chain dehydrogenase/reductase SDR  100 
 
 
261 aa  535  1e-151  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1556  short-chain dehydrogenase/reductase SDR  86.21 
 
 
261 aa  471  1e-132  Pectobacterium wasabiae WPP163  Bacteria  normal  0.596662  n/a   
 
 
-
 
NC_004578  PSPTO_4275  oxidoreductase, short-chain dehydrogenase/reductase family  63.32 
 
 
261 aa  332  5e-90  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_3249  short-chain dehydrogenase/reductase SDR  45.7 
 
 
258 aa  195  5.000000000000001e-49  Caulobacter sp. K31  Bacteria  normal  normal  0.559348 
 
 
-
 
NC_013517  Sterm_2330  short-chain dehydrogenase/reductase SDR  38.89 
 
 
257 aa  171  1e-41  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000620196  n/a   
 
 
-
 
NC_011729  PCC7424_4642  short-chain dehydrogenase/reductase SDR  38.31 
 
 
264 aa  171  1e-41  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000179752 
 
 
-
 
NC_013132  Cpin_5008  short-chain dehydrogenase/reductase SDR  40.17 
 
 
298 aa  169  4e-41  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0468951  hitchhiker  0.00252787 
 
 
-
 
NC_013515  Smon_1006  short-chain dehydrogenase/reductase SDR  35.69 
 
 
257 aa  167  1e-40  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_008261  CPF_2906  short chain dehydrogenase/reductase family oxidoreductase  39.44 
 
 
257 aa  167  2e-40  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  40.32 
 
 
263 aa  164  1.0000000000000001e-39  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_009483  Gura_1536  short-chain dehydrogenase/reductase SDR  39.75 
 
 
260 aa  164  1.0000000000000001e-39  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2585  short chain dehydrogenase/reductase family oxidoreductase  38.65 
 
 
257 aa  162  4.0000000000000004e-39  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2448  short-chain dehydrogenase/reductase SDR  36.99 
 
 
257 aa  162  7e-39  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_3911  short-chain dehydrogenase/reductase SDR  40.16 
 
 
267 aa  161  1e-38  'Nostoc azollae' 0708  Bacteria  normal  0.322734  n/a   
 
 
-
 
NC_013501  Rmar_1809  short-chain dehydrogenase/reductase SDR  39.62 
 
 
263 aa  160  2e-38  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  36.9 
 
 
266 aa  160  2e-38  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_010511  M446_3398  short-chain dehydrogenase/reductase SDR  39.83 
 
 
265 aa  160  3e-38  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.162957 
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  37.8 
 
 
271 aa  159  4e-38  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_011894  Mnod_4423  short-chain dehydrogenase/reductase SDR  38.98 
 
 
276 aa  159  4e-38  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.235547  n/a   
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  36.36 
 
 
262 aa  159  6e-38  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  39.33 
 
 
264 aa  157  2e-37  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  37.4 
 
 
262 aa  155  4e-37  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_007512  Plut_1969  short chain dehydrogenase/reductase family oxidoreductase  36.9 
 
 
260 aa  156  4e-37  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  37.34 
 
 
256 aa  155  8e-37  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  36.51 
 
 
266 aa  154  1e-36  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_0497  short-chain dehydrogenase/reductase SDR  37.8 
 
 
360 aa  154  1e-36  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_009784  VIBHAR_05256  short-chain dehydrogenase/reductase SDR  38.66 
 
 
259 aa  154  2e-36  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009441  Fjoh_3794  short-chain dehydrogenase/reductase SDR  35.02 
 
 
262 aa  152  4e-36  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl1378  hypothetical protein  33.2 
 
 
259 aa  152  5e-36  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011060  Ppha_2686  short-chain dehydrogenase/reductase SDR  39.04 
 
 
258 aa  152  8e-36  Pelodictyon phaeoclathratiforme BU-1  Bacteria  hitchhiker  0.00673203  n/a   
 
 
-
 
NC_007778  RPB_0113  short-chain dehydrogenase/reductase SDR  39.13 
 
 
259 aa  151  1e-35  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886287  normal 
 
 
-
 
NC_006368  lpp1382  hypothetical protein  32.81 
 
 
259 aa  150  2e-35  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007514  Cag_0350  short chain dehydrogenase/reductase family oxidoreductase  41.12 
 
 
259 aa  149  3e-35  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  0.000771311  n/a   
 
 
-
 
NC_011729  PCC7424_1836  short-chain dehydrogenase/reductase SDR  36.73 
 
 
260 aa  149  3e-35  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008726  Mvan_3113  short-chain dehydrogenase/reductase SDR  40.08 
 
 
262 aa  149  4e-35  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.999856 
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  36.73 
 
 
264 aa  148  7e-35  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  36.44 
 
 
258 aa  148  9e-35  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  36.05 
 
 
263 aa  147  1.0000000000000001e-34  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  38.68 
 
 
267 aa  147  1.0000000000000001e-34  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0274  short chain dehydrogenase/reductase family protein  36.76 
 
 
259 aa  148  1.0000000000000001e-34  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4109  short-chain dehydrogenase/reductase SDR  36.11 
 
 
269 aa  148  1.0000000000000001e-34  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.00421935 
 
 
-
 
NC_013061  Phep_3131  short-chain dehydrogenase/reductase SDR  34 
 
 
258 aa  147  1.0000000000000001e-34  Pedobacter heparinus DSM 2366  Bacteria  normal  0.859893  normal 
 
 
-
 
NC_011059  Paes_0281  short-chain dehydrogenase/reductase SDR  33.86 
 
 
255 aa  147  2.0000000000000003e-34  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000634692  hitchhiker  0.00117931 
 
 
-
 
NC_008639  Cpha266_0226  short-chain dehydrogenase/reductase SDR  35.51 
 
 
259 aa  147  2.0000000000000003e-34  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.996462  n/a   
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  37.19 
 
 
261 aa  146  3e-34  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_011884  Cyan7425_1889  short-chain dehydrogenase/reductase SDR  36.28 
 
 
264 aa  146  4.0000000000000006e-34  Cyanothece sp. PCC 7425  Bacteria  normal  0.0188274  normal 
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  36.97 
 
 
255 aa  145  5e-34  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0353  short chain dehydrogenase/reductase family oxidoreductase  32.13 
 
 
265 aa  145  7.0000000000000006e-34  Clostridium perfringens ATCC 13124  Bacteria  normal  0.45647  n/a   
 
 
-
 
NC_010831  Cphamn1_0312  short-chain dehydrogenase/reductase SDR  34.98 
 
 
261 aa  145  8.000000000000001e-34  Chlorobium phaeobacteroides BS1  Bacteria  hitchhiker  0.0000113464  decreased coverage  0.000120518 
 
 
-
 
NC_013165  Shel_18580  short-chain dehydrogenase of unknown substrate specificity  34.11 
 
 
258 aa  144  1e-33  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.489964  normal 
 
 
-
 
NC_007958  RPD_0689  short-chain dehydrogenase/reductase SDR  37.45 
 
 
259 aa  144  1e-33  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  36.03 
 
 
258 aa  144  2e-33  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_1539  short-chain dehydrogenase/reductase SDR  40.35 
 
 
223 aa  144  2e-33  Acidiphilium cryptum JF-5  Bacteria  normal  0.382635  n/a   
 
 
-
 
NC_013440  Hoch_3300  short-chain dehydrogenase/reductase SDR  38.62 
 
 
272 aa  143  2e-33  Haliangium ochraceum DSM 14365  Bacteria  normal  0.605078  normal  0.514892 
 
 
-
 
NC_008009  Acid345_1611  short-chain dehydrogenase/reductase SDR  37.5 
 
 
262 aa  144  2e-33  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2466  short-chain dehydrogenase/reductase SDR  37.65 
 
 
283 aa  144  2e-33  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  36.78 
 
 
261 aa  144  2e-33  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  41.96 
 
 
258 aa  143  3e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_008262  CPR_0344  3-oxoacyl-[acyl-carrier protein] reductase  31.73 
 
 
265 aa  143  3e-33  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_1841  short-chain dehydrogenase/reductase SDR  40.08 
 
 
266 aa  143  3e-33  Methylocella silvestris BL2  Bacteria  n/a    normal  0.197421 
 
 
-
 
NC_013132  Cpin_6133  short-chain dehydrogenase/reductase SDR  36.33 
 
 
263 aa  143  3e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_05610  short-chain dehydrogenase of unknown substrate specificity  35.98 
 
 
296 aa  141  9e-33  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.100134  normal  0.886117 
 
 
-
 
NC_011004  Rpal_0423  short-chain dehydrogenase/reductase SDR  38.27 
 
 
259 aa  141  9.999999999999999e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.83571  n/a   
 
 
-
 
NC_008146  Mmcs_4085  short-chain dehydrogenase/reductase SDR  36.22 
 
 
267 aa  141  9.999999999999999e-33  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4315  short-chain dehydrogenase/reductase SDR  36.22 
 
 
267 aa  141  9.999999999999999e-33  Mycobacterium sp. JLS  Bacteria  normal  normal  0.294207 
 
 
-
 
NC_013202  Hmuk_1178  short-chain dehydrogenase/reductase SDR  37.45 
 
 
259 aa  141  9.999999999999999e-33  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.82399  normal 
 
 
-
 
NC_008705  Mkms_4161  short-chain dehydrogenase/reductase SDR  36.22 
 
 
267 aa  141  9.999999999999999e-33  Mycobacterium sp. KMS  Bacteria  normal  0.209625  normal 
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  37.25 
 
 
259 aa  140  1.9999999999999998e-32  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_013204  Elen_0666  short-chain dehydrogenase/reductase SDR  37.99 
 
 
343 aa  140  1.9999999999999998e-32  Eggerthella lenta DSM 2243  Bacteria  normal  0.019294  hitchhiker  0.000464867 
 
 
-
 
NC_008255  CHU_3621  short-chain dehydrogenase  32.13 
 
 
258 aa  140  1.9999999999999998e-32  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_3324  short-chain dehydrogenase/reductase SDR  37.7 
 
 
269 aa  140  3e-32  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.377978 
 
 
-
 
NC_007406  Nwi_0477  short-chain dehydrogenase/reductase SDR  39.47 
 
 
256 aa  139  3.9999999999999997e-32  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2044  short-chain dehydrogenase/reductase SDR  37.35 
 
 
260 aa  139  3.9999999999999997e-32  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.756544 
 
 
-
 
NC_013730  Slin_4202  short-chain dehydrogenase/reductase SDR  37.07 
 
 
344 aa  139  4.999999999999999e-32  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_0906  short-chain dehydrogenase/reductase SDR  37.45 
 
 
273 aa  139  4.999999999999999e-32  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.127379  n/a   
 
 
-
 
NC_009953  Sare_4948  short-chain dehydrogenase/reductase SDR  35.83 
 
 
253 aa  139  6e-32  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.623441 
 
 
-
 
NC_013730  Slin_6445  short-chain dehydrogenase/reductase SDR  36.29 
 
 
272 aa  138  7e-32  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2064  oxidoreductase ( short-chain dehydrogenase)  37.77 
 
 
264 aa  138  1e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.694867  normal  0.0846624 
 
 
-
 
NC_009077  Mjls_0177  short-chain dehydrogenase/reductase SDR  37.7 
 
 
262 aa  135  5e-31  Mycobacterium sp. JLS  Bacteria  normal  normal  0.721122 
 
 
-
 
NC_008255  CHU_2063  short-chain dehydrogenase  37.39 
 
 
261 aa  135  5e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0247773  normal  0.17766 
 
 
-
 
NC_013037  Dfer_5585  short-chain dehydrogenase/reductase SDR  37.5 
 
 
265 aa  135  6.0000000000000005e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.892025  normal  0.853623 
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  37.3 
 
 
262 aa  135  7.000000000000001e-31  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  37.3 
 
 
262 aa  135  7.000000000000001e-31  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2321  dehydrogenase/reductase oxidoreductase protein  36.76 
 
 
275 aa  135  8e-31  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.195083 
 
 
-
 
NC_007964  Nham_0606  short-chain dehydrogenase/reductase SDR  38.59 
 
 
256 aa  135  9e-31  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_2195  short-chain dehydrogenase/reductase SDR  36.14 
 
 
250 aa  134  9.999999999999999e-31  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.92313 
 
 
-
 
NC_013203  Apar_0041  short-chain dehydrogenase/reductase SDR  36.36 
 
 
257 aa  134  9.999999999999999e-31  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_2864  short-chain dehydrogenase/reductase SDR  36.05 
 
 
289 aa  134  9.999999999999999e-31  Opitutus terrae PB90-1  Bacteria  normal  normal  0.327148 
 
 
-
 
NC_007413  Ava_1011  Short-chain dehydrogenase/reductase SDR  35.27 
 
 
258 aa  133  3e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  0.968961  hitchhiker  0.00922057 
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  36.9 
 
 
253 aa  132  3.9999999999999996e-30  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0189  short-chain dehydrogenase/reductase SDR  35.48 
 
 
267 aa  132  3.9999999999999996e-30  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.00000709968  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  33.2 
 
 
263 aa  131  1.0000000000000001e-29  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2996  short-chain dehydrogenase/reductase SDR  33.59 
 
 
268 aa  130  3e-29  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.056073 
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  34.58 
 
 
273 aa  129  3e-29  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  32.79 
 
 
321 aa  129  5.0000000000000004e-29  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_6207  short-chain dehydrogenase/reductase SDR  35.29 
 
 
277 aa  128  8.000000000000001e-29  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0310  short-chain dehydrogenase/reductase SDR  34.48 
 
 
284 aa  127  1.0000000000000001e-28  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0055  short-chain dehydrogenase/reductase SDR  37.04 
 
 
259 aa  128  1.0000000000000001e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_4770  short-chain dehydrogenase/reductase SDR  36.78 
 
 
266 aa  127  2.0000000000000002e-28  Caulobacter sp. K31  Bacteria  normal  normal  0.228735 
 
 
-
 
NC_008392  Bamb_6118  short-chain dehydrogenase/reductase SDR  34.5 
 
 
275 aa  127  2.0000000000000002e-28  Burkholderia ambifaria AMMD  Bacteria  normal  0.304156  normal  0.200034 
 
 
-
 
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