More than 300 homologs were found in PanDaTox collection
for query gene EcSMS35_0033 on replicon NC_010498
Organism: Escherichia coli SMS-3-5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011353  ECH74115_0036  carbamoyl phosphate synthase large subunit  99.53 
 
 
1073 aa  2196  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E0037  carbamoyl phosphate synthase large subunit  99.53 
 
 
1073 aa  2194  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010655  Amuc_1251  carbamoyl-phosphate synthase, large subunit  61.08 
 
 
1067 aa  1293  Akkermansia muciniphila ATCC BAA-835  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0874  carbamoyl phosphate synthase large subunit  69.05 
 
 
1084 aa  1490  Burkholderia phymatum STM815  Bacteria  normal  normal  0.176638 
 
 
-
 
NC_010581  Bind_0869  carbamoyl-phosphate synthase, large subunit  60.94 
 
 
1107 aa  1276  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.292684  normal  0.18024 
 
 
-
 
NC_010577  XfasM23_0393  carbamoyl phosphate synthase large subunit  69.07 
 
 
1080 aa  1504  Xylella fastidiosa M23  Bacteria  normal  0.803496  n/a   
 
 
-
 
NC_010571  Oter_0679  carbamoyl-phosphate synthase, large subunit  58.92 
 
 
1095 aa  1211  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_1181  carbamoyl phosphate synthase large subunit  68.69 
 
 
1084 aa  1469  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.202192 
 
 
-
 
NC_010531  Pnec_0849  carbamoyl phosphate synthase large subunit  68.41 
 
 
1087 aa  1493  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.173852 
 
 
-
 
NC_010524  Lcho_2822  carbamoyl-phosphate synthase, large subunit  68.25 
 
 
1091 aa  1447  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010513  Xfasm12_0452  carbamoyl phosphate synthase large subunit  69.07 
 
 
1080 aa  1504  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3399  carbamoyl-phosphate synthase, large subunit  59.46 
 
 
1157 aa  1301  Methylobacterium sp. 4-46  Bacteria  normal  0.961572  normal  0.176314 
 
 
-
 
NC_010508  Bcenmc03_1263  carbamoyl phosphate synthase large subunit  68.41 
 
 
1084 aa  1474  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.522789  normal  0.213082 
 
 
-
 
NC_010506  Swoo_3577  carbamoyl phosphate synthase large subunit  81.45 
 
 
1072 aa  1839  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.108884 
 
 
-
 
NC_010505  Mrad2831_0567  carbamoyl-phosphate synthase, large subunit  58.28 
 
 
1157 aa  1251  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0354318  normal  0.109208 
 
 
-
 
NC_010501  PputW619_0709  carbamoyl phosphate synthase large subunit  74.56 
 
 
1073 aa  1660  Pseudomonas putida W619  Bacteria  normal  normal  0.0416816 
 
 
-
 
NC_010498  EcSMS35_0033  carbamoyl phosphate synthase large subunit  100 
 
 
1073 aa  2203  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2867  carbamoyl phosphate synthase large subunit  68.23 
 
 
1084 aa  1471  Burkholderia phytofirmans PsJN  Bacteria  hitchhiker  0.00982729  normal 
 
 
-
 
NC_010682  Rpic_2034  carbamoyl phosphate synthase large subunit  68.26 
 
 
1081 aa  1474  Ralstonia pickettii 12J  Bacteria  normal  0.305177  normal 
 
 
-
 
NC_010717  PXO_00086  carbamoyl phosphate synthase large subunit  69.72 
 
 
1080 aa  1527  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0586  carbamoyl phosphate synthase large subunit  84.61 
 
 
1076 aa  1896  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.221423  n/a   
 
 
-
 
NC_011206  Lferr_0789  carbamoyl-phosphate synthase, large subunit  66.85 
 
 
1079 aa  1446  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0073  carbamoyl phosphate synthase large subunit  97.86 
 
 
1075 aa  2163  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.841404  normal 
 
 
-
 
NC_011149  SeAg_B0074  carbamoyl phosphate synthase large subunit  97.86 
 
 
1075 aa  2164  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1900  carbamoyl-phosphate synthase, large subunit  65.27 
 
 
1082 aa  1444  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00662116  n/a   
 
 
-
 
NC_011145  AnaeK_3603  carbamoyl phosphate synthase large subunit  51.53 
 
 
1067 aa  1046  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2118  carbamoyl phosphate synthase large subunit  62.04 
 
 
1077 aa  1337  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_02243  carbamoyl phosphate synthase large subunit  79.03 
 
 
1073 aa  1763  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A0075  carbamoyl phosphate synthase large subunit  97.86 
 
 
1075 aa  2164  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C0071  carbamoyl phosphate synthase large subunit  97.76 
 
 
1075 aa  2163  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0071  carbamoyl phosphate synthase large subunit  97.67 
 
 
1075 aa  2160  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.423134  normal 
 
 
-
 
NC_011071  Smal_1812  carbamoyl phosphate synthase large subunit  70 
 
 
1080 aa  1525  Stenotrophomonas maltophilia R551-3  Bacteria  decreased coverage  0.00557421  normal  0.0258544 
 
 
-
 
NC_011004  Rpal_4605  carbamoyl phosphate synthase large subunit  62.2 
 
 
1109 aa  1328  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.709642  n/a   
 
 
-
 
NC_010816  BLD_0085  carbamoylphosphate synthase large subunit  52.27 
 
 
1127 aa  1096  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2079  carbamoyl-phosphate synthase, large subunit  65.63 
 
 
1082 aa  1429  Geobacter lovleyi SZ  Bacteria  normal  0.0359545  n/a   
 
 
-
 
NC_010725  Mpop_1022  carbamoyl-phosphate synthase, large subunit  59.59 
 
 
1157 aa  1287  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010483  TRQ2_0380  carbamoyl-phosphate synthase, large subunit  55.46 
 
 
1099 aa  1171  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3622  carbamoyl phosphate synthase large subunit  99.44 
 
 
1073 aa  2194  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.443028 
 
 
-
 
NC_010465  YPK_3582  carbamoyl phosphate synthase large subunit  92.73 
 
 
1077 aa  2071  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0034  carbamoyl phosphate synthase large subunit  99.63 
 
 
1073 aa  2197  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0036  carbamoyl phosphate synthase large subunit  99.63 
 
 
1073 aa  2197  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_00913  carbamoyl phosphate synthase large subunit  84.62 
 
 
1077 aa  1897  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009767  Rcas_3357  carbamoyl-phosphate synthase, large subunit  55.25 
 
 
1112 aa  1200  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_009727  CBUD_1370  carbamoyl-phosphate synthase large chain  68.9 
 
 
1073 aa  1513  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.636117  n/a   
 
 
-
 
NC_009720  Xaut_2750  carbamoyl-phosphate synthase, large subunit  62.55 
 
 
1120 aa  1349  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_2313  carbamoyl-phosphate synthase, large subunit  63.9 
 
 
1079 aa  1310  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.417995  normal  0.014378 
 
 
-
 
NC_009715  CCV52592_0870  carbamoyl phosphate synthase large subunit  55.15 
 
 
1087 aa  1197  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_009714  CHAB381_1350  carbamoyl phosphate synthase large subunit  54.29 
 
 
1086 aa  1170  Campylobacter hominis ATCC BAA-381  Bacteria  normal  0.501423  n/a   
 
 
-
 
NC_009708  YpsIP31758_3453  carbamoyl phosphate synthase large subunit  92.73 
 
 
1077 aa  2071  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.755127  n/a   
 
 
-
 
NC_009707  JJD26997_1692  carbamoyl phosphate synthase large subunit  55.37 
 
 
1089 aa  1205  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2072  carbamoyl phosphate synthase large subunit  62.07 
 
 
1083 aa  1350  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.471557 
 
 
-
 
NC_009667  Oant_1679  carbamoyl phosphate synthase large subunit  60.48 
 
 
1161 aa  1327  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_3400  carbamoyl phosphate synthase large subunit  83.58 
 
 
1074 aa  1867  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3001  carbamoyl-phosphate synthase, large subunit  54.64 
 
 
1104 aa  1134  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.105986  normal  0.458872 
 
 
-
 
NC_009656  PSPA7_5476  carbamoyl phosphate synthase large subunit  76.51 
 
 
1073 aa  1690  Pseudomonas aeruginosa PA7  Bacteria  normal  0.783479  n/a   
 
 
-
 
NC_009802  CCC13826_2127  carbamoyl phosphate synthase large subunit  56.1 
 
 
1086 aa  1216  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_3403  carbamoyl phosphate synthase large subunit  81.92 
 
 
1072 aa  1845  Shewanella sediminis HAW-EB3  Bacteria  normal  decreased coverage  5.6188e-05 
 
 
-
 
NC_009832  Spro_0714  carbamoyl phosphate synthase large subunit  93.84 
 
 
1074 aa  2075  Serratia proteamaculans 568  Bacteria  normal  normal  0.278068 
 
 
-
 
NC_010338  Caul_4285  carbamoyl phosphate synthase large subunit  62.81 
 
 
1105 aa  1316  Caulobacter sp. K31  Bacteria  normal  normal  0.233689 
 
 
-
 
NC_010322  PputGB1_4724  carbamoyl phosphate synthase large subunit  74.56 
 
 
1073 aa  1657  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1088  carbamoyl-phosphate synthase, large subunit  59.67 
 
 
1157 aa  1291  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.464939 
 
 
-
 
NC_010159  YpAngola_A0783  carbamoyl phosphate synthase large subunit  92.64 
 
 
1077 aa  2066  Yersinia pestis Angola  Bacteria  normal  0.523621  normal  0.328934 
 
 
-
 
NC_010117  COXBURSA331_A1430  carbamoyl-phosphate synthase, large subunit  68.9 
 
 
1073 aa  1514  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2028  carbamoyl phosphate synthase large subunit  68.96 
 
 
1084 aa  1486  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_4931  carbamoyl-phosphate synthase, large subunit  69.57 
 
 
1052 aa  1467  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.324611 
 
 
-
 
NC_009997  Sbal195_3525  carbamoyl phosphate synthase large subunit  83.58 
 
 
1074 aa  1867  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009976  P9211_09421  carbamoyl phosphate synthase large subunit  55.33 
 
 
1102 aa  1212  Prochlorococcus marinus str. MIT 9211  Bacteria  normal  0.48338  hitchhiker  0.00020479 
 
 
-
 
NC_009975  MmarC6_1646  carbamoyl-phosphate synthase, large subunit  52.04 
 
 
1081 aa  1085  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_009972  Haur_0060  carbamoyl-phosphate synthase, large subunit  58.58 
 
 
1065 aa  1226  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_1849  carbamoyl-phosphate synthase, large subunit  53.75 
 
 
1115 aa  1092  Salinispora arenicola CNS-205  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2639  carbamoyl phosphate synthase large subunit  62.08 
 
 
1105 aa  1296  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.239677  normal 
 
 
-
 
NC_009943  Dole_0121  carbamoyl-phosphate synthase, large subunit  57.8 
 
 
1075 aa  1238  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1710  carbamoyl phosphate synthase large subunit  52.41 
 
 
1136 aa  1096  Frankia sp. EAN1pec  Bacteria  normal  hitchhiker  0.00485747 
 
 
-
 
NC_009901  Spea_3074  carbamoyl phosphate synthase large subunit  82.18 
 
 
1073 aa  1849  Shewanella pealeana ATCC 700345  Bacteria  normal  0.581012  n/a   
 
 
-
 
NC_009654  Mmwyl1_4034  carbamoyl-phosphate synthase, large subunit  74.37 
 
 
1071 aa  1655  Marinomonas sp. MWYL1  Bacteria  hitchhiker  0.00188727  normal 
 
 
-
 
NC_014248  Aazo_0571  carbamoyl-phosphate synthase large subunit  57.97 
 
 
1094 aa  1268  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2340  carbamoyl-phosphate synthase, large subunit  53.34 
 
 
1110 aa  1120  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4206  carbamoyl-phosphate synthase, large subunit  60.07 
 
 
1077 aa  1279  Haliangium ochraceum DSM 14365  Bacteria  normal  0.412079  normal 
 
 
-
 
NC_013422  Hneap_1562  carbamoyl-phosphate synthase, large subunit  68.62 
 
 
1077 aa  1499  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3840  carbamoyl phosphate synthase large subunit  94.22 
 
 
1074 aa  2087  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_1917  carbamoyl phosphate synthase large subunit  52.35 
 
 
1065 aa  1085  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013385  Adeg_0373  carbamoyl-phosphate synthase, large subunit  50.74 
 
 
1075 aa  1046  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_4275  carbamoyl-phosphate synthase, large subunit  52.66 
 
 
1124 aa  1091  Nakamurella multipartita DSM 44233  Bacteria  normal  0.40687  normal 
 
 
-
 
NC_013223  Dret_0320  carbamoyl-phosphate synthase, large subunit  59.92 
 
 
1078 aa  1279  Desulfohalobium retbaense DSM 5692  Bacteria  unclonable  3.36143e-07  normal 
 
 
-
 
NC_013216  Dtox_2352  carbamoyl-phosphate synthase, large subunit  50.42 
 
 
1074 aa  1045  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.374511  normal 
 
 
-
 
NC_013205  Aaci_1308  carbamoyl-phosphate synthase, large subunit  51.04 
 
 
1082 aa  1048  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1670  carbamoyl-phosphate synthase, large subunit  57.52 
 
 
1078 aa  1220  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.00809225 
 
 
-
 
NC_013203  Apar_0613  carbamoyl-phosphate synthase, large subunit  54.55 
 
 
1073 aa  1183  Atopobium parvulum DSM 20469  Bacteria  normal  0.438109  normal  0.344128 
 
 
-
 
NC_013174  Jden_1321  carbamoyl-phosphate synthase, large subunit  54.38 
 
 
1109 aa  1130  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.149141 
 
 
-
 
NC_013173  Dbac_3211  carbamoyl-phosphate synthase, large subunit  59.68 
 
 
1082 aa  1255  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_14770  carbamoyl-phosphate synthase large subunit  51.99 
 
 
1117 aa  1067  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013169  Ksed_12690  carbamoyl-phosphate synthase large subunit  55.12 
 
 
1118 aa  1140  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.0359466  normal  0.0639836 
 
 
-
 
NC_013456  VEA_004478  carbamoyl-phosphate synthase large chain  84.62 
 
 
1077 aa  1897  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2001  carbamoyl-phosphate synthase, large subunit  55.98 
 
 
946 aa  1039  Rhodothermus marinus DSM 4252  Bacteria  normal  0.890669  n/a   
 
 
-
 
NC_013510  Tcur_3012  carbamoyl-phosphate synthase, large subunit  55.85 
 
 
1107 aa  1164  Thermomonospora curvata DSM 43183  Bacteria  normal  0.541011  n/a   
 
 
-
 
NC_014212  Mesil_2272  carbamoyl-phosphate synthase, large subunit  56.74 
 
 
1030 aa  1078  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3102  carbamoyl-phosphate synthase, large subunit  55.52 
 
 
1100 aa  1160  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_1355  carbamoyl-phosphate synthase large subunit  54.97 
 
 
1092 aa  1149  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0316249 
 
 
-
 
NC_014158  Tpau_2581  carbamoyl-phosphate synthase, large subunit  54 
 
 
1109 aa  1132  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.195323  n/a   
 
 
-
 
NC_014151  Cfla_1846  carbamoyl-phosphate synthase, large subunit  54.62 
 
 
1111 aa  1115  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal  0.422098 
 
 
-
 
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