| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2728 |
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| Symbol | carB |
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| ID | 3968417 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3454391 |
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| End bp | 3457624 |
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| Gene Length | 3234 bp |
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| Protein Length | 1077 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637921828 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_528200 |
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| Protein GI | 90022373 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.523784 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACAGACAT TAAAAGTATT TTGATTATTG GTGCTGGCCC AATCGTAATT
GGACAGGCCT GTGAGTTTGA CTATTCCGGT GCGCAAGCTT GTAAAGCACT ACGCGAAGAG
GGCTACCGAG TTATTTTGGT TAACTCTAAC CCCGCCACCA TTATGACCGA CCCCTCCATG
GCCGATGCAA CTTATATCGA GCCAATTACT TGGGAAACGG TAGCAAAAAT TATTGAGAAA
GAGCGCCCCG ACGCGGTACT ACCTACTATG GGTGGCCAAA CTGCGCTGAA TTGTGCTTTG
GCATTGCACA AACACGGTGT GCTTGAAGAG TTTGGTGTTG AGCTAATTGG CGCAACCGAA
GACGCAATTG ATAAAGCAGA AGACCGTAAC CGTTTTGACC AAGCCATGAA GAAAATTGGT
TTGGAGTGTG CGCGAGCTAA AATTGTACAC ACCATGGAAG AAGCAAACCA AGTACCTAAA
GAATTTGGTT TCCCATGTAT TATTCGCCCG TCGTTTACTA TGGGTGGTTC CGGTGGTGGT
ATTGCCTACA ACTGGGAAGA ATTCGAAGAA ATTTGTACGC GCGGTTTAGA TTTATCGCCA
ACCAACGAAT TGCTTATTGA TGAATCGTTG TTGGGTTGGA AAGAATACGA AATGGAAGTT
GTTCGCGATA AAAACGACAA CTGCATTATT ATTTGCTCCA TCGAAAACTT TGACCCAATG
GGCGTGCATA CCGGTGACTC TATTACGGTT GCGCCAGCGC AAACCCTTAC CGATAAAGAA
TATCAAATTA TGCGTAACGC ATCGATTGCG GTGCTGCGTG AAATTGGTGT TGAAACGGGT
GGCTCCAACG TGCAGTTCGC GGTTAACCCC GAAGATGGCC GTTTAGTTGT AATTGAAATG
AACCCGCGTG TATCGCGCTC TTCCGCGCTT GCTTCTAAAG CTACTGGCTT CCCAATTGCA
AAAATTGCAG CCAAGCTCGC TGTAGGTTAC ACCCTAGATG AATTGCAAAA CGATATTACC
GGCGGCGCAA CTCCTGCTTC GTTCGAACCT AGTATCGATT ACGTTGTAAC AAAAATCCCT
CGTTTTACTT TCGAAAAATT CGGCGATGCC GATGCGCGCT TAACCACGCA GATGAAATCT
GTAGGTGAGG TAATGGCAAT TGGTCGCAAC TTCCAAGAGT CTTTGCAAAA AGCATTGCGC
GGCTTAGAAG TTGGTTCTGC TGGTTTCGAA CCGCGTGTAG ATTTGACTGG CGACAATGCG
TTAGAGCTTA TTCGTCGCGA CCTTTCTACC CCGGGTGCTG AGCGTATTTG GTATGTGGCC
GACGCATTCC GCGCAGGTAT GACCGTAGAA GAAGTGCACG AGCAATCTGC TATTGACCCT
TGGTTCTTGG TGCAAATTAA AGACATTATC GACACCGAAA CGGCGCTTTC TTCTATGCCG
TTGGTAGATG TTGATAAGCG CATTATGTTC AACCTTAAGC GCAAAGGTTT TTCCGATAAG
CGCTTAGGTA AGCTGTTAGG TGTTTCCGAA AAAACCTTGC GTGGGCATCG TCATAAGTTA
GACGTGCACC CTGTGTATAA GCGCGTAGAT ACCTGTGCAG CAGAGTTCTC AACCTCTACT
GCGTATATGT ATTCCACGTA CGATGAAGAG TGTGAATCTA ACCCTACGAG CCGTGAAAAA
ATCATGGTTA TTGGTGGCGG GCCTAACCGT ATTGGACAGG GTATTGAGTT CGATTACTGC
TGTGTACACG CTGCTTTGGC GTCGCGTGAA GCGGGCTACG AAGCCATTAT GGTTAACTGT
AACCCAGAGA CAGTATCAAC CGATTACGAC ACTTCCGACC GCTTGTATTT CGAGCCGGTT
ACCTTAGAAG ACGTGTTAGA AATTGTTCAT AGAGAAAAGC CAAAAGGTGT AATTGTGCAG
TTTGGTGGCC AAACGCCACT TAAGCTAGCT AACGCCTTAG AAGCTGAAGG TGTACCTATT
ATTGGTACCA GCCCAGAAGC TATCGACCGC GCGGAAGATC GCGAGCGCTT CCAGCAAATG
ATTCAGCGAT TAGAGTTGTT GCAACCACCT AATGCTATTG TGCGCTCAAC AGAAGAGGCT
ATTCATATAG CACCTACCGT TGGTTACCCA TTAGTTGTAC GCCCATCTTA TGTATTGGGT
GGCCGCGCTA TGGAAATTGT ATACACCGAA AACGAATTAA GAACTTACAT GCGCGAAGCG
GTGCAGGCTT CTGAAGATTC GCCTGTATTG CTAGATCACT TCTTAAATAA CGCAATTGAA
GTTGATATTG ATGCAGTGTC TGACGGCGAG CGCGTTGTTA TTGGCGGAAT TATGCAGCAC
ATTGAGCAAT GTGGTGTTCA CTCTGGTGAC TCTGCATGTT CATTGCCGCC GTACTCTCTA
CCTGAAGATG TGCAAGATGA AATGCGCGAG CAAGTGCGCA AAATGGCGCG CGAGCTAGGC
GTTATTGGTT TGATGAACGT GCAGCTTGCA TATCAAGACG GTCGTATTTA CGTGATTGAA
GTTAACCCTC GTGGTTCGCG TACTGTACCG TTTGTATCTA AGTGTATTGG TGTATCGCTT
GCTAAAATTG CTGCGCTTTG TCAAACAGGC AAAACGTTAG AAGAGCTAGG CTTTACCGAA
GAAATCGTGC CCGATTACTA CAGCGTGAAA GAAGCGGTAT TCCCGTTCAA TAAATTCCCT
GCTGTTGACC CAATACTTGG GCCAGAAATG AAATCTACCG GTGAAGTTAT GGGTGTAGGT
GATACCTTCG CCGAAGCTTA CTCTAAGGCG CAGGTTGGCA GTGGTGGTGA TTTACCAACA
TCTGGTACGG CATTTATTAG TGTGCGAGAC TTTGATAAAG ACGGCATAGT GGTAGTTGCT
AAAGAGCTTA CCGATATGGG CTTTAGTGTT GTTGCTACTC GCGGCACCGC AAAAACGTTA
GAGGCGGCCG GCTTAAGCGT TAAAGTGGTT AACAAGGTAG GCGAAGGTCG CCCACACATT
GTTGATATGA TTAAAAACCG CGAAGTTGCT ATGGTAATTA ATACCACCGA AGGCAAAAAA
GCGATTAAAG ATTCTGCGTC TATTCGTCGC AGCGCCGAAA ATAATCATGT TTACTACACC
ACAACGTTGG CAGCGGCTAA TGCGCTTTGT ATGGCATTGC GATTTGGTAA AAATCACGAA
GTGCGCACTC TGCAAGAACT GCATGTACGT ACTGCAAAAC TTGCAAAAGC GTAA
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| Protein sequence | MPKRTDIKSI LIIGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPSM
ADATYIEPIT WETVAKIIEK ERPDAVLPTM GGQTALNCAL ALHKHGVLEE FGVELIGATE
DAIDKAEDRN RFDQAMKKIG LECARAKIVH TMEEANQVPK EFGFPCIIRP SFTMGGSGGG
IAYNWEEFEE ICTRGLDLSP TNELLIDESL LGWKEYEMEV VRDKNDNCII ICSIENFDPM
GVHTGDSITV APAQTLTDKE YQIMRNASIA VLREIGVETG GSNVQFAVNP EDGRLVVIEM
NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDELQNDIT GGATPASFEP SIDYVVTKIP
RFTFEKFGDA DARLTTQMKS VGEVMAIGRN FQESLQKALR GLEVGSAGFE PRVDLTGDNA
LELIRRDLST PGAERIWYVA DAFRAGMTVE EVHEQSAIDP WFLVQIKDII DTETALSSMP
LVDVDKRIMF NLKRKGFSDK RLGKLLGVSE KTLRGHRHKL DVHPVYKRVD TCAAEFSTST
AYMYSTYDEE CESNPTSREK IMVIGGGPNR IGQGIEFDYC CVHAALASRE AGYEAIMVNC
NPETVSTDYD TSDRLYFEPV TLEDVLEIVH REKPKGVIVQ FGGQTPLKLA NALEAEGVPI
IGTSPEAIDR AEDRERFQQM IQRLELLQPP NAIVRSTEEA IHIAPTVGYP LVVRPSYVLG
GRAMEIVYTE NELRTYMREA VQASEDSPVL LDHFLNNAIE VDIDAVSDGE RVVIGGIMQH
IEQCGVHSGD SACSLPPYSL PEDVQDEMRE QVRKMARELG VIGLMNVQLA YQDGRIYVIE
VNPRGSRTVP FVSKCIGVSL AKIAALCQTG KTLEELGFTE EIVPDYYSVK EAVFPFNKFP
AVDPILGPEM KSTGEVMGVG DTFAEAYSKA QVGSGGDLPT SGTAFISVRD FDKDGIVVVA
KELTDMGFSV VATRGTAKTL EAAGLSVKVV NKVGEGRPHI VDMIKNREVA MVINTTEGKK
AIKDSASIRR SAENNHVYYT TTLAAANALC MALRFGKNHE VRTLQELHVR TAKLAKA
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