| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0632 |
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| Symbol | carB |
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| ID | 4076119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 672273 |
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| End bp | 675635 |
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| Gene Length | 3363 bp |
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| Protein Length | 1120 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005929 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_612627 |
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| Protein GI | 99080473 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.298922 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.175677 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAAGA GAACCGATAT CAAGTCGATC ATGATCATTG GCGCCGGGCC CATCGTCATC
GGTCAGGCCT GCGAATTCGA CTATTCTGGC GCTCAGGCCT GCAAGGCGCT GCGCGAAGAA
GGCTACCGGG TGATCCTGGT GAACTCCAAC CCAGCGACGA TCATGACCGA CCCGGGTCTT
GCTGATGCGA CCTACATCGA GCCGATCACC CCGGAAGTGG TCGCCAAGAT CATCGAGAAA
GAACGCCCCG ACGCGCTCCT GCCGACGATG GGCGGGCAGA CCGGCCTCAA CACCTCGCTC
GCGCTTGAGG AAATGGGCGT CCTCGAAAAA TTCAACGTCG AGATGATCGG CGCCAAGCGC
GAAGCCATCG AGATGGCCGA AGACCGCAAG CTCTTCCGCG AGGCCATGGA TCGCCTCGGT
CTTGAAAACC CGCGCGCCAC CATTGTTACA GCGCCGAAAA AAGACAACGG CAACGCCGAC
CTTGAGGCGG GTGTCGCGCT TGCACTCGAA GCCCTCGAGG ACATCGGCCT GCCCGCAATC
ATCCGCCCCG CCTTTACCCT CGGTGGCACC GGTGGCGGCG TGGCCTACAA TCGCGAGGAT
TACATCCACT ATTGCCGCTC CGGCATGGAT GCCTCTCCGG TGAACCAGAT CCTCGTCGAT
GAGAGCCTGC TGGGCTGGAA AGAATACGAG ATGGAAGTGG TCCGCGACAA AGCGGATAAT
GCCATCATCG TCTGCTCGAT CGAAAACGTG GACCCGATGG GCGTTCATAC CGGGGACTCG
ATCACCGTGG CCCCTGCCCT TACGCTTACG GACAAGGAAT ATCAGATGAT GCGGACCGCC
TCGATTGCGG TCCTGCGCGA GATTGGCGTG GAAACCGGCG GCTCCAACGT ACAATGGGCA
GTGAACCCCG CAGACGGGCG GATGGTTGTC ATCGAGATGA ACCCGCGCGT GAGCCGCTCT
TCGGCGCTGG CCTCCAAAGC GACAGGTTTC CCGATTGCAA AGATCGCGGC AAAGCTTGCT
GTGGGCTACA CGCTCGACGA GTTGGACAAC GACATCACCA AGGTGACGCC TGCATCGTTT
GAGCCGACCA TCGACTATGT CGTCACCAAA ATTCCGAAAT TCGCGTTTGA GAAATTCCCT
GGTTCCGAGC CTTACCTCAC GACAGCGATG AAATCGGTGG GCGAAGCCAT GGCGATTGGC
CGCACCATCC ACGAATCGAT GCAAAAGGCG CTCGCTTCGA TGGAATCCGG TCTCACCGGC
TTTGACGAGG TGGAGATCCC CGGTGTGCAA GCTGGCCTTT GGGAAAGCGT TGGTGCCGAC
GACAAGGCCG CAGTGATCAA GGCGATCAGC CAGCAGACCC CGGACCGCCT GCGCACCATC
GCACAGGCGA TGCGTCATGG CTTGTCGGAC GACGAAATTC AGGGCGTCAC GAAATTCGAT
CCGTGGTTCC TCGCCCGGAT CCGCGAGATC ATCGACGCCG AGCGCGAGAT CCGCAAAAAT
GGCCTACCGA TGCGCGAAGA CAAGCTGCGC GCGCTCAAGA TGCTCGGCTT TTCGGACGCC
CGTCTGGGTC TGCTGACGGG CCGTGACGAG GACAACGTGC GCCGCGCGCG CCACAACCTC
GGCGTCAAGG CGGTGTTCAA ACGCATCGAC ACCTGCGCCG CAGAGTTCGA AGCGCAGACG
CCCTATATGT ACTCCACCTA TGAAAGCCCG ATGATGGGTG AAGTGGAATG CGAAGCGCGC
CCCTCGGATC GCAAAAAGGT CGTTATTCTT GGTGGCGGGC CAAACCGGAT CGGTCAGGGT
ATCGAGTTCG ACTACTGCTG CTGTCACGCC TGTTTTGCGC TGACGGATGC GGGGTATGAG
ACCATCATGG TCAACTGCAA CCCGGAAACA GTTTCGACCG ACTATGACAC CTCGGATCGC
CTCTATTTCG AGCCCCTCAC CATGGAGCAC GTCATGGAGA TCCTGCGCGT CGAACAGGAA
AACGGCACCC TGCACGGTGT GATTGTTCAG TTCGGTGGCC AAACCCCGCT GAAACTTGCC
AATGCGCTAG AGGCCGAAGG CATTCCGATC CTCGGCACCA CGCCGGACGC GATTGACCTT
GCCGAAGACC GTGAGCGCTT CCAGGCGCTT GTGAATGAGC TTGGCCTGAA ACAGCCCAAG
AACGGCATCG CTTCCACCGG CGAACAAGCG CTTAAGATCG CAGAGGAAAT CGGCTTCCCG
CTGGTGATCC GCCCGTCCTA CGTTCTGGGT GGTCGCGCGA TGGAAATCGT GCGCGACATG
GACCAGCTCA AACGCTACAT CAACGAGGCA GTGGTGGTAT CGGGCGACAG CCCGGTGCTC
TTGGACAGCT ACCTCTCTGG CGCGGTGGAG CTCGACGTGG ACGCGATCTG CGACGGCAAA
GACGTGCATG TTGCAGGCAT CATGCAGCAT ATCGAGGAAG CTGGCGTTCA CTCTGGTGAC
TCGGCGTGCT CGCTGCCGCC GTACTCGCTC GACAAAGAGG TGATCGAGCG TATCAAGGAG
CAGAGCTTTG CGCTTGCGAA GGCGCTGAAT GTTGTTGGTC TGATGAACGT GCAATTTGCG
ATCAAGGACA ATGAGATCTA CCTGATTGAG GTAAACCCGC GCGCCTCGCG CACGGTGCCG
TTTGTCGCCA AGGCCACCGA CAGCGCCATC GCCTCCATCG CCGCGCGCGT CATGGCCGGA
GAGCCGCTGT CGAACTTCCC GCAGCGCGCA CCCTACGAGC CCGACGCAGG CTATGACGTG
AACACACCCA TGGCTGATCC GATGACGCTT GCTGACCCGG ACATGCCGTG GTTCTCCGTC
AAAGAAGCGG TGCTGCCCTT TGCCCGTTTC CCCGGCGTCG ACACCATTCT GGGGCCGGAA
ATGCGCTCTA CCGGTGAAGT CATGGGCTGG GATCGCAGCT TTGCGCGTGC CTTCCTCAAG
GCGCAGATGG GCGCTGGCAT GGTGCTGCCC AGCAAAGGAC GCGCGTTCAT TTCGATCAAG
GATGAGGACA AGACCGAAGT CATGCTCGAT ACGGCGCGCA TCCTGATCGC CCAGGGCTTT
GATCTGGTGG CCACCCGCGG CACGCAGGGG TGGCTTGCGG GGCACGGTGT AGAGTGCGCT
GTGGTGAACA AGGTCTATGA AGGACGTCCG CATGTGGTGG ACATGCTCAA GGATGGCGAG
ATCCAGCTGG TGCTCAACAC CACCGAAGGC AACCAGGCGG TCGAGGATTC CAAGCCGATG
CGCTCTGTCG CGCTCTATGA CAAGATCCCC TATTTCACCA CCGCCGCCGG GGCCCATGCC
GCCGCGCGCG CCATTCAGGC GCAGGCCGAA GGGGAAGTCG AAGTGAAAAG CCTGCAAGGC
TAA
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| Protein sequence | MPKRTDIKSI MIIGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPGL
ADATYIEPIT PEVVAKIIEK ERPDALLPTM GGQTGLNTSL ALEEMGVLEK FNVEMIGAKR
EAIEMAEDRK LFREAMDRLG LENPRATIVT APKKDNGNAD LEAGVALALE ALEDIGLPAI
IRPAFTLGGT GGGVAYNRED YIHYCRSGMD ASPVNQILVD ESLLGWKEYE MEVVRDKADN
AIIVCSIENV DPMGVHTGDS ITVAPALTLT DKEYQMMRTA SIAVLREIGV ETGGSNVQWA
VNPADGRMVV IEMNPRVSRS SALASKATGF PIAKIAAKLA VGYTLDELDN DITKVTPASF
EPTIDYVVTK IPKFAFEKFP GSEPYLTTAM KSVGEAMAIG RTIHESMQKA LASMESGLTG
FDEVEIPGVQ AGLWESVGAD DKAAVIKAIS QQTPDRLRTI AQAMRHGLSD DEIQGVTKFD
PWFLARIREI IDAEREIRKN GLPMREDKLR ALKMLGFSDA RLGLLTGRDE DNVRRARHNL
GVKAVFKRID TCAAEFEAQT PYMYSTYESP MMGEVECEAR PSDRKKVVIL GGGPNRIGQG
IEFDYCCCHA CFALTDAGYE TIMVNCNPET VSTDYDTSDR LYFEPLTMEH VMEILRVEQE
NGTLHGVIVQ FGGQTPLKLA NALEAEGIPI LGTTPDAIDL AEDRERFQAL VNELGLKQPK
NGIASTGEQA LKIAEEIGFP LVIRPSYVLG GRAMEIVRDM DQLKRYINEA VVVSGDSPVL
LDSYLSGAVE LDVDAICDGK DVHVAGIMQH IEEAGVHSGD SACSLPPYSL DKEVIERIKE
QSFALAKALN VVGLMNVQFA IKDNEIYLIE VNPRASRTVP FVAKATDSAI ASIAARVMAG
EPLSNFPQRA PYEPDAGYDV NTPMADPMTL ADPDMPWFSV KEAVLPFARF PGVDTILGPE
MRSTGEVMGW DRSFARAFLK AQMGAGMVLP SKGRAFISIK DEDKTEVMLD TARILIAQGF
DLVATRGTQG WLAGHGVECA VVNKVYEGRP HVVDMLKDGE IQLVLNTTEG NQAVEDSKPM
RSVALYDKIP YFTTAAGAHA AARAIQAQAE GEVEVKSLQG
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