| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0985 |
|---|
| Symbol | carB |
|---|
| ID | 4081673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 1009907 |
|---|
| End bp | 1013227 |
|---|
| Gene Length | 3321 bp |
|---|
| Protein Length | 1106 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638009345 |
|---|
| Product | carbamoyl phosphate synthase large subunit |
|---|
| Protein accession | YP_616035 |
|---|
| Protein GI | 103486474 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.557617 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAAA GAACCGACAT CCAATCCATC CTCGTCATCG GCGCCGGCCC GATCGTTATC
GGTCAGGCGT GCGAGTTCGA CTATTCGGGG ACGCAGGCGA TCAAGGCGCT GAAGGAGGAG
GGCTATCGCA TCGTCCTCGT CAACTCCAAC CCCGCGACGA TCATGACCGA TCCCGACCTT
GCCGACGCCA CCTATGTCGA GCCGATCACG CCCGAGATCG TCGCGAAGAT CATCGCCAAG
GAGCGCCCCG ATGCGGTGCT GCCGACGATG GGCGGGCAGA CCGCGCTCAA CACCGCGCTG
GCGCTGTTCA ACGACGGGAC GCTGGCGAAA TATGGCGTCG AGATGATCGG CGCCAAGGCG
GAAGCGATCG ACAAGGCCGA GGACCGGCAG AAGTTCCGCG AGGCGATGGA CAGGATCGGG
CTGGAAAGCG CGCGCAGCGG CATTGCGCAC ACGCTGGAGG AGGCCTTTGC GGTGCTCGAA
CGCACCGGGC TGCCGTCGAT CATCCGCCCG TCGTTCACGC TCGGCGGCAC CGGCGGCGGC
ATCGCCTATA ACCGCGAGGA GTTCGAGCAG ATCGTCCGCG GCGGCCTGAT CGCCTCGCCG
ACCACCGAAG TCCTGATCGA GGAATCGCTC CTCGGCTGGA AAGAATATGA GATGGAGGTG
GTGCGCGACG CCAAGGACAA TTGCATCATC ATCTGTTCGA TCGAAAATGT CGATCCGATG
GGCGTGCATA CGGGCGACAG CATCACCGTC GCCCCCGCGC TGACGCTGAC CGACAAGGAA
TATCAGATCA TGCGGAGCGC GAGCATCGCG GTGCTGCGCG AGATCGGGGT CGAGACCGGC
GGGTCGAACG TCCAGTTCGC GGTGAACCCG AAGGACGGCC GCCTGATCGT GATCGAGATG
AACCCGCGCG TGTCGCGCTC GTCGGCGCTC GCGTCGAAGG CGACGGGTTT CCCGATTGCG
AAGGTCGCGG CGAAGCTGGC GGTCGGCTAC ACCCTCGACG AGATCATGAA CGACATCACC
GGCGTGACCC CGGCATCGTT CGAGCCGACG ATCGACTATG TCGTCACCAA GATCCCGCGC
TTTGCTTTTG AAAAGTTCAA GGGCGCCGAA GCGACGCTGT CGACCGCGAT GAAGTCGGTC
GGCGAAGTGA TGGCGATCGG GCGGACGATC CACGAGTCGC TGCAAAAGGC GCTGCGCGGC
CTGGAAACGG GGCTTTCGGG CTTCAATTTC GTCGACCGGC TGAAGGGCGC GAGCCACGAG
CAATTGCGCA ACGAACTGGC GCAGCGCACC CCCGACCGGT TGCTCAACGC GGCGCAGGCG
ATCCGCGAAG GGCTGCCGCT TGAAGAGATC AACCGCGTCG CCGGTTACGA CATGTGGTTC
CTTGAGCGCA TCGCCGAAAT CGTCGAGGCC GAAAAGCAGG TGTGCGTCAA CGGCCTGCCG
CGCGATGCCG AAGGGCTGCG GAAGCTCAAG GCGATGGGTT TTTCCGACAA GCGCCTTGCC
TATCTGGCGC TCCAGTCGGC GAACCTCCAC CCCGGCACGC GCCGCGCGAC CGCGCGCGGC
AGCGGGCTGA TCCACGAGGC GGTGAAGGCG ATGACCGGCG GCGTGACCGA GGGCGAAGTG
CGCGCGCTGC GCCACAAGCT CGGCGTGCGG CCGGTGTTCA AGACGATCGA CACCTGCGCC
GCGGAGTTTC AGGCAAAAAC GCCCTATCTC TATTCGACCT ATGAAGCGCC GACCTTTGGC
GAGCCCGAGT GCGAGGCGAA CCCGTCGGAT CGCCGGAAGA TCGTCATCCT GGGCGGCGGT
CCGAACCGCA TCGGGCAGGG GATCGAGTTC GATTATTGCT GCTGCCACGC CTGCTTCGCG
TTGGAAGAGG CGGGGTATGA GACGATCATG ATCAACTGCA ACCCGGAGAC GGTGAGCACC
GATTATGACA CGTCGGACCG CCTCTATTTC GAGCCGCTGA CCGCCGAAGA TGTGCTCGAA
ATCCTGCACG TCGAAATGTC GAAGGGCGAG CTGGTCGGCG TGATCGTCCA GTTCGGCGGG
CAGACGCCAT TGAAGCTCGC GCAGGCGCTG AGCGATGCGG GCATCCCGAT CCTCGGCACC
TCGCCCGATG CGATCGACCT CGCCGAAGAT CGCGAGCGTT TCGCCGCGCT TGTCAACAAG
CTCGGCCTGA AACAGCCCGA AAATGGCATC GCGCGCAGCC GCGAGGAAGC GATCGCGGTC
GCGGCGCGCA TCGGCTATCC GGTGCTCACG CGCCCCAGCT ATGTCCTCGG CGGCCGCGCG
ATGGAGATCG TCGACGATCA GGCGCAGCTC GAAAATTACA TCGAGACCGC GGTGCAGGTG
TCGGGCACAT CGCCGGTGCT GATCGACCGT TATCTGCGCG ACGCGATCGA GGTCGATGTC
GATGCGCTCT GCGACGGCAC CGACGTGGTG GTTGCGGGCG TGCTCCAGCA TATCGAGGAA
GCCGGGGTCC ATTCGGGCGA CAGCGCCTGT TCGATCCCGC CCTACAGCCT GCCCGCCGAC
ATCATCGCGG AGATCGAGCG GCAGACCGAT GCACTGGCGC GCGCGCTGGG CGTGCGCGGG
CTGATGAACG TCCAATATGC GGTGAAGGAC GGCGAGGTCT ATCTGATCGA GGTCAACCCG
CGCGCCAGCC GCACGGTGCC CTTCGTCGCG AAAGCAGTGG GGTCGCCGAT CGCCAAGATC
GCGGCGCGCG TGATGGCGGG CGAAAAGCTG GCCGACCTGC CGAAGATCAA CCGCGACATC
AAACATGTCG CGGTGAAGGA AGCGGTGTTC CCCTTCGCGC GCTTCCCCGG CACCGACCCG
GTGCTGTCGC CCGAGATGAA GTCCACCGGC GAAGTCATGG GAATCGATCG CGATTTCAAC
CTGGCCTTTG CCAAGGCACA GCTTGGCGCG GGCGACCGGC TGCCGACCGA TGGCCGCCTG
TTCGTATCGG TGAAGGACAG CGACAAGCCG CGAATCGTCG GCGCGGTAAA ACAGCTTTGC
GCGTGGGGGT GGAAGGTGAT CGCGACCGGC GGCACCGCCG ACTATCTGGC GGGGCAGGGG
ATCGAGGTCG AGCGTGTGAA CAAGGTTGCC GAAGGCCGCC CGCACATCGT CGACCGGATC
AAGGACGGCG ACGTGCAGCT GATCTTCAAC ACCACCGAAG GCTGGCAATC GCTGCAGGAT
TCGCAGTCGA TCCGCGCTTC GGCGCTTGCG GCCGACATCG CCTATTATAC CACCGCGGCG
GCCAGCGACG CGGCGACACA GGCGATCGGG GCGCTGCGCG CGCACTCCCT TGAAGTGAAG
CCGCTTCAGG ACTATTATTG A
|
|---|
| Protein sequence | MPKRTDIQSI LVIGAGPIVI GQACEFDYSG TQAIKALKEE GYRIVLVNSN PATIMTDPDL
ADATYVEPIT PEIVAKIIAK ERPDAVLPTM GGQTALNTAL ALFNDGTLAK YGVEMIGAKA
EAIDKAEDRQ KFREAMDRIG LESARSGIAH TLEEAFAVLE RTGLPSIIRP SFTLGGTGGG
IAYNREEFEQ IVRGGLIASP TTEVLIEESL LGWKEYEMEV VRDAKDNCII ICSIENVDPM
GVHTGDSITV APALTLTDKE YQIMRSASIA VLREIGVETG GSNVQFAVNP KDGRLIVIEM
NPRVSRSSAL ASKATGFPIA KVAAKLAVGY TLDEIMNDIT GVTPASFEPT IDYVVTKIPR
FAFEKFKGAE ATLSTAMKSV GEVMAIGRTI HESLQKALRG LETGLSGFNF VDRLKGASHE
QLRNELAQRT PDRLLNAAQA IREGLPLEEI NRVAGYDMWF LERIAEIVEA EKQVCVNGLP
RDAEGLRKLK AMGFSDKRLA YLALQSANLH PGTRRATARG SGLIHEAVKA MTGGVTEGEV
RALRHKLGVR PVFKTIDTCA AEFQAKTPYL YSTYEAPTFG EPECEANPSD RRKIVILGGG
PNRIGQGIEF DYCCCHACFA LEEAGYETIM INCNPETVST DYDTSDRLYF EPLTAEDVLE
ILHVEMSKGE LVGVIVQFGG QTPLKLAQAL SDAGIPILGT SPDAIDLAED RERFAALVNK
LGLKQPENGI ARSREEAIAV AARIGYPVLT RPSYVLGGRA MEIVDDQAQL ENYIETAVQV
SGTSPVLIDR YLRDAIEVDV DALCDGTDVV VAGVLQHIEE AGVHSGDSAC SIPPYSLPAD
IIAEIERQTD ALARALGVRG LMNVQYAVKD GEVYLIEVNP RASRTVPFVA KAVGSPIAKI
AARVMAGEKL ADLPKINRDI KHVAVKEAVF PFARFPGTDP VLSPEMKSTG EVMGIDRDFN
LAFAKAQLGA GDRLPTDGRL FVSVKDSDKP RIVGAVKQLC AWGWKVIATG GTADYLAGQG
IEVERVNKVA EGRPHIVDRI KDGDVQLIFN TTEGWQSLQD SQSIRASALA ADIAYYTTAA
ASDAATQAIG ALRAHSLEVK PLQDYY
|
|---|
| |