| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4501 |
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| Symbol | carB |
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| ID | 1186184 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 5068738 |
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| End bp | 5071959 |
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| Gene Length | 3222 bp |
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| Protein Length | 1073 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637395842 |
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| Product | carbamoyl-phosphate synthase, large subunit |
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| Protein accession | NP_794254 |
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| Protein GI | 28871635 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACAGATAT TAAAAGCATC CTGATTCTCG GCGCCGGCCC CATCGTGATC
GGCCAGGCCT GTGAATTCGA CTACTCCGGC GCCCAGGCTT GCAAAGCCCT GCGCGAAGAG
GGCTATCGAG TTATCCTGGT GAACTCCAAC CCGGCGACCA TCATGACCGA CCCGGCCATG
GCCGACGCCA CCTACATCGA GCCGATCAAA TGGCAGACCG TTGCCAAGAT CATCGAGAAA
GAGCGCCCGG ACGCGTTGCT GCCAACCATG GGCGGCCAGA CCGCACTGAA CTGCGCACTG
GATCTGGAGC GTGAAGGCGT TCTGGAGAAG TTCGGCGTAG AGATGATCGG TGCCAACGCC
GACACCATCG ACAAGGCTGA AGACCGTTCG CGTTTCGACA AGGCCATGAA GTCCATCGGC
CTGGCGTGCC CGCGTTCCGG CATCGCGCAC AGCATGGAAG AAGCCAACGC GGTTCTTGAA
AAGCTCGGTT TCCCTTGCAT CATCCGTCCG TCGTTCACCA TGGGTGGCAC GGGCGGCGGT
ATTGCTTACA ATCGTGAAGA GTTCGAAGAA ATCTGCGCTC GTGGTCTGGA CCTGTCTCCG
ACCAAGGAAC TGCTGATCGA CGAATCGCTG ATCGGCTGGA AAGAGTACGA AATGGAAGTT
GTCCGCGACA AAAAGGACAA CTGCATCATC GTCTGCTCCA TCGAAAACTT CGATCCGATG
GGTGTGCACA CCGGTGACTC CATCACCGTT GCCCCGGCAC AGACCCTGAC CGACAAGGAA
TATCAGATCC TGCGTAACGC CTCGCTGGCG GTACTGCGCG AGATTGGCGT TGAAACGGGT
GGTTCCAACG TTCAGTTCGG CATCTGCCCG GACACCGGCC GTATGGTCGT CATCGAGATG
AACCCGCGCG TGTCGCGTTC CTCGGCGCTG GCTTCCAAGG CGACCGGCTT CCCGATTGCC
CGGGTTGCGG CCAAGCTTGC AGTGGGTTAC ACCCTCGACG AGCTGTCCAA CGAAATCACC
GGCGGCAAGA CCCCGGCGTC CTTCGAGCCA TCCATCGACT ACGTCGTTAC CAAGCTGCCG
CGCTTCGCGT TTGAGAAGTT CGCCAAGGCC GATGCACGCC TGACCACGCA GATGAAGTCG
GTGGGTGAAG TCATGGCCAT CGGCCGTACT TTCCAGGAAT CCCTGCAGAA AGCGCTGCGC
GGCCTGGAAG TTGGTGTGTG TGGCCTTGAT CCGAAGCTGG ACCTCAGCCA TCCGGAAAGC
ATGAGCACGC TCAAGCGCGA GCTGACCGTG CCGGGCGCCG AGCGTATCTG GTACGTCGCC
GATGCGTTCC GCGCAGGCAT GACTGTCGAA GAAATCTTCG CCATGAACAT GATCGACCCC
TGGTTTCTGG TCCAGATCGA AGATCTGGTC AAGGACGAGG AGAAGATCAA GACGCTTGGC
CTGTCGGCAA TTGATCGCGA CCTGATGTAC CGTCTCAAGC GCAAGGGCTT CTCCGATGCA
CGCCTGGCCA AACTGGTCGG CGTTACCGAG AAAAACCTGC GCACGCACCG TCACAAGCTG
GATGTGTTCC CGGTCTACAA GCGCGTCGAT ACCTGCGCGG CCGAGTTTGC AACCGACACC
GCGTACCTTT ACTCGACGTA CGAAGAAGAG TGCGAAGCCA ACCCTTCGAC GCGCGACAAG
ATCATGATCC TCGGCGGTGG CCCTAACCGT ATCGGCCAGG GTATCGAGTT CGACTACTGC
TGCGTGCACG CAGCCCTGGC GCTGCGTGAA GACGGGTACG AGACCATCAT GGTCAACTGC
AACCCGGAAA CCGTCTCCAC CGACTACGAC ACCTCTGATC GTCTGTACTT CGAGCCGGTC
ACCCTGGAAG ACGTGCTGGA AATCGTACGC GTCGAGAAGC CCAAGGGCGT GATCGTGCAG
TACGGCGGCC AGACCCCGCT GAAACTCGCC CGTGCCCTGG AAGCCGCCGG CGTCCCGATC
ATCGGCACCA GCCCGGACGC CATCGACCGC GCAGAAGACC GCGAGCGCTT CCAGCAGATG
GTCGAGCGTC TCAACCTGCG TCAGCCGCCA AACGCCACCG TGCGCAGCGA AGACGAAGCG
ATTCGTGCCG CCGCGAAAAT CGGTTACCCG CTGGTCGTGC GTCCGTCCTA TGTACTGGGC
GGCCGGGCGA TGGAAATCGT TTACCAGGAA GACGAGCTCA AGCGTTACCT GCGTGAAGCG
GTTCAGGTGT CCAACGACAG CCCGGTGCTG CTCGACCACT TCCTGAACTG CGCCATCGAA
ATGGACGTCG ATGCAGTTTG CGACGGTACT GACGTGGTGA TCGGCGCGAT CATGCAGCAC
ATCGAACAGG CGGGCGTTCA CTCCGGCGAC TCCGCCTGCT CGCTGCCGCC GTACTCGCTG
CCTGCTCACA TCCAGGACGA GATGCGCGAA CAGGTCAAGA AGATGGCCCT GGAACTGGGC
GTGGTGGGCC TGATGAACGT ACAGCTGGCA CTTCAGGGCG AAGACATCTA CGTGATCGAA
GTGAACCCGC GTGCATCGCG TACCGTGCCG TTCGTTTCCA AGTGCATCGG TGTTTCCCTG
GCCATGATCG CTGCGCGCGT GATGGCGGGT AAAACCCTGA AAGAGCTGAA TTTCACCAAG
GAAATCATTC CTAATTTCTA TAGTGTGAAA GAGGCCGTGT TCCCGTTCGC CAAATTCCCT
GGCGTTGACC CGATCCTTGG CCCGGAAATG AAGTCGACCG GCGAAGTGAT GGGCGTGGGC
GACACCTTCG GTGAAGCGTT CGCCAAGGCT CAGATGGGCG CCAGCGAAGT GCTGCCGACC
GGCGGTACTG CGTTTATCAG CGTACGTGAT GACGACAAGC CGCTGGTTGA AGCGGTTGCT
CGTGACCTGA TCAACCTGGG TTTCGAAATT GTCGCAACAG CCGGAACGGC CAAGCTGATC
GAAGCGGCCG GCCTGAAAGT GCGTCGCGTC AACAAGGTGA CCGAAGGTCG CCCGCACGTG
GTCGACATGA TCAAGAATGA CGAAGTCACC CTGATCATCA ACACCACCGA AGGCCGTCAG
TCTATCGCTG ATTCCTACTC CATCCGTCGC AACGCCTTGC AGCACAAGAT TTACTGCACC
ACTACCATTG CAGCAGGCGA AGCGATCTGC GAAGCGCTCA AGTTCGGCCC AGAGAAGACC
GTGCGTCGCT TGCAGGACCT CCATGCAGGA TTGAAGGCAT GA
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| Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPAM
ADATYIEPIK WQTVAKIIEK ERPDALLPTM GGQTALNCAL DLEREGVLEK FGVEMIGANA
DTIDKAEDRS RFDKAMKSIG LACPRSGIAH SMEEANAVLE KLGFPCIIRP SFTMGGTGGG
IAYNREEFEE ICARGLDLSP TKELLIDESL IGWKEYEMEV VRDKKDNCII VCSIENFDPM
GVHTGDSITV APAQTLTDKE YQILRNASLA VLREIGVETG GSNVQFGICP DTGRMVVIEM
NPRVSRSSAL ASKATGFPIA RVAAKLAVGY TLDELSNEIT GGKTPASFEP SIDYVVTKLP
RFAFEKFAKA DARLTTQMKS VGEVMAIGRT FQESLQKALR GLEVGVCGLD PKLDLSHPES
MSTLKRELTV PGAERIWYVA DAFRAGMTVE EIFAMNMIDP WFLVQIEDLV KDEEKIKTLG
LSAIDRDLMY RLKRKGFSDA RLAKLVGVTE KNLRTHRHKL DVFPVYKRVD TCAAEFATDT
AYLYSTYEEE CEANPSTRDK IMILGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC
NPETVSTDYD TSDRLYFEPV TLEDVLEIVR VEKPKGVIVQ YGGQTPLKLA RALEAAGVPI
IGTSPDAIDR AEDRERFQQM VERLNLRQPP NATVRSEDEA IRAAAKIGYP LVVRPSYVLG
GRAMEIVYQE DELKRYLREA VQVSNDSPVL LDHFLNCAIE MDVDAVCDGT DVVIGAIMQH
IEQAGVHSGD SACSLPPYSL PAHIQDEMRE QVKKMALELG VVGLMNVQLA LQGEDIYVIE
VNPRASRTVP FVSKCIGVSL AMIAARVMAG KTLKELNFTK EIIPNFYSVK EAVFPFAKFP
GVDPILGPEM KSTGEVMGVG DTFGEAFAKA QMGASEVLPT GGTAFISVRD DDKPLVEAVA
RDLINLGFEI VATAGTAKLI EAAGLKVRRV NKVTEGRPHV VDMIKNDEVT LIINTTEGRQ
SIADSYSIRR NALQHKIYCT TTIAAGEAIC EALKFGPEKT VRRLQDLHAG LKA
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