Gene Patl_2214 details

Gene Information

• Locus tag: Patl_2214
• Symbol: carB
• ID: 4172366
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 2672354
• End bp: 2675572
• Gene Length: 3219 bp
• Protein Length: 1072 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638055222
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_661786
• Protein GI: 109898531
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism
• COG ID: [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit; [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.173726
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAAC GTACCGACAT AAAAAGTATC TTAATTATTG GTGCTGGACC GATCGTCATC 
GGCCAGGCCT GTGAATTCGA CTATTCAGGT GCGCAGGCGT GTAAAGCACT GCGTGAAGAA 
GGTTATCGAG TTATTTTAGT TAACTCTAAC CCTGCCACTA TAATGACCGA CCCTGAAATG 
GCCGATGCCA CTTACATCGA GCCGATCCAT TGGGAAGTGG TTAGAAAAAT TATTGAAAAA 
GAACGCCCTG ATGCCATTTT GCCAACCATG GGCGGACAAA CCGCACTTAA CTGTGCGTTA 
GATTTAGATA AGCACGGCGT GCTAACTGAA TTCGGCGTTG AAATGATTGG CGCCACTGCG 
GATGCCATTG ATAAAGCCGA AGATCGCGAA CGTTTTGATA AGGCGATGAA ATCAATTGGC 
CTTGAATGCC CCCGTGCTGA AATTGCGCAT AGCCTAGATG AAGCATTCGA TGTTTCAACT 
CGTATCGGTT TCCCCTGTAT TATTCGCCCA TCTTTCACTA TGGGTGGCAG CGGTGGCGGT 
ATTGCCTATA ACGTCGAAGA GTTTGAAGAA ATCTGCCGTC GTGGTCTTGA TTTGTCACCA 
ACGTCTGAAC TGTTGATTGA TGAATCATTG ATTGGTTGGA AAGAGTATGA AATGGAAGTA 
GTACGGGATA AAGCAGACAA CTGCATTATC GTGTGTACTA TCGAAAACTT TGACGCTATG 
GGTGTTCATA CCGGTGATTC GATTACCGTT GCGCCAGCCC AAACGCTTAC CGATAAAGAA 
TTTCAAATTA TGCGTAATGC CGCTATGGCC GTATTGCGTG AGATTGGTGT TGAAACGGGA 
GGCTCAAATG TTCAGTTTGG TGTTGACCCC CAAACTGGTC GTTTAGTTAT TATCGAAATG 
AACCCGCGCG TTTCTCGCTC ATCGGCTTTG GCATCTAAAG CGACGGGCTT CCCGATTGCA 
AAAGTAGCGG CAAAGCTAGC CATTGGTTAT ACCTTGGATG AACTTGCCAA CGATATTACA 
GGTGGTTTAA CACCTGCGTC GTTTGAGCCG GCCATCGATT ACGTTGTAAC TAAAATCCCG 
CGTTTTAACT TCGAAAAATT TGCTGGTGCC AATGACCGCC TAACGACTCA AATGAAGTCA 
GTAGGTGAGG TCATGTCAAT TGGCCGTAAT CAACAAGAAT CCTTGCAAAA AGCATTACGC 
GGACTAGAAG TTGGTGTTAA TGGCTTTGAT TCTATTATCG ATTATACCGA TCCAGAAAAC 
AAAGCGACCA TCATTCGTGA ACTTCGCGAG CCAGGAGCTG AACGCATTTG GTACATAGCA 
GATGCGATGC GAATGGGCAT GGACATCGAA GAGATTTTTG CCCTAACGAA TGTTGACCGT 
TGGTACTTAG TGCAAATTGA AGATCTGGTT AAAGAAGAAC AAAACGTCGC GAACATTGGT 
TTATCTGGTA TTGATGCCAC ATTGATGAAC CGATTGAAGC GTAAAGGGTT CTCTGATGCG 
CGTATCGCTG ATTTGACCGG TGTCGACCAA GGTGATGTGC GCCAAATACG TCGTGGCTTT 
GATATTCACC CTGTCTACAA ACGCGTTGAT ACCTGTGCGG CTGAGTTTGC CTCTAGCACT 
GCATATATGT ACTCAACGTA CGATGAAGAA TGCGAAGCAA ATCCCACTGA CAAAGATAAA 
ATTATGGTTA TCGGTGGCGG GCCTAACCGC ATTGGTCAAG GAATTGAGTT TGATTATTGT 
TGTGTTCACG CTGCTTTGGC AATGCGTGAA GATGGCTACG AAACTATCAT GGTTAACTGT 
AACCCTGAAA CGGTTTCCAC TGATTACGAT ACATCAGACC GTTTGTACTT CGAATCAGTG 
ACCTTAGAAG ACGTGCTGGA AATTGTCCGT ATCGAGAAGC CCGTTGGCGT TATTGTTCAA 
TACGGTGGTC AAACCCCCCT TAAGTTAGCG CGTGATTTAG AAGCTGCAGG GGTACCCATC 
ATTGGTACTT CACCTGACGC TATCGATAAA GCGGAAGATC GTGAGCGTTT CCAGAAAATG 
GTCAACAAGT TGAACCTCAA GCAACCGGCG AATGCGACGG TAAGCAATCT TGAAGAAGCT 
TTGCTCGCGG CTGAGAAAAT TGGTTTCCCA TTGGTTGTTC GCCCTTCATA TGTACTTGGC 
GGACGCGCGA TGGAAATCGT GTATGACCTA AAAGATTTGA AACGTTACTT AAACAATGCG 
GTTAAAGTCT CTAATGACTC ACCTGTATTA CTCGACCGTT TCTTAGATGA CGCAATTGAA 
GTGGATGTAG ACGCTATCTG TGACGGTAAA GAAGTCATGA TTGGCGGTAT TATGGAGCAC 
ATTGAACAAG CAGGCGTTCA CTCAGGTGAC TCAGCATGTT CGCTTCCACC TTATTCGCTG 
AGCGAGGACA TTCAAAACGT CATGCGCGAG CAAGTTAAAG CCATGGCATT AGAATTAGGT 
GTGGTCGGTT TGATGAACAC GCAATTCGCG GTCAAAGACG GGGAGGTATA CTTAATTGAA 
GTTAACCCTC GTGCTGCTCG TACTGTGCCG TTTGTGTCTA AAGCGACAGG TTTGGCCATT 
GCCAAAATTG GTGCTCGCGC TATGGCTGGT CAGTCTCTTG CTTCGCAAGG TCTGAGCAAA 
GAAGTCATTC CTCCGTTTTA TAGCGTTAAA GAAGTGGTGT TGCCTTTTGC TAAGTTTCAA 
GGCGTAGACC CCTTACTTGG CCCTGAAATG CGCTCTACCG GCGAAGTGAT GGGAGTAGGT 
GATACCTTCG TGGAAGCTTA CGCTAAAGCA AATTTAGGTG CTGGCGAGCC CATCCCAGCA 
GGAGGGAAAG CATTGCTTTC TGTTCGTCTT AACGATAAAA ATCGTATTAT CGAATTAGGT 
CGAGCCATGG TAGCAAAAGG ATTTAATCTT GAAGCAACGC GCGGAACGGC TGAAGTGCTG 
AATAAAGCCG ATGTGCCTTG CTCTATTGTG AACAAGCTAT CCGAAGGTCG CCCTAATATT 
GTAGATGCGA TTAAAAACGG TGAATATTGT TATATCATCA ATACCACCGA AGGACGTCAA 
GCAATCGATG ATTCTGTGTA TATTCGTCGT GAAGCGCTGC TAAATAAAAT TCCTTATACC 
ACCACTATGA ATGCGGCGTT TGCCACGGTT AATGCAAATA AAGCTGACGA CCGTGCCAGA 
GTGCATTCAG TACAAGAATT ACATAAACGT TTAGTTTAA 

 

Protein sequence

MPKRTDIKSI LIIGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM 
ADATYIEPIH WEVVRKIIEK ERPDAILPTM GGQTALNCAL DLDKHGVLTE FGVEMIGATA 
DAIDKAEDRE RFDKAMKSIG LECPRAEIAH SLDEAFDVST RIGFPCIIRP SFTMGGSGGG 
IAYNVEEFEE ICRRGLDLSP TSELLIDESL IGWKEYEMEV VRDKADNCII VCTIENFDAM 
GVHTGDSITV APAQTLTDKE FQIMRNAAMA VLREIGVETG GSNVQFGVDP QTGRLVIIEM 
NPRVSRSSAL ASKATGFPIA KVAAKLAIGY TLDELANDIT GGLTPASFEP AIDYVVTKIP 
RFNFEKFAGA NDRLTTQMKS VGEVMSIGRN QQESLQKALR GLEVGVNGFD SIIDYTDPEN 
KATIIRELRE PGAERIWYIA DAMRMGMDIE EIFALTNVDR WYLVQIEDLV KEEQNVANIG 
LSGIDATLMN RLKRKGFSDA RIADLTGVDQ GDVRQIRRGF DIHPVYKRVD TCAAEFASST 
AYMYSTYDEE CEANPTDKDK IMVIGGGPNR IGQGIEFDYC CVHAALAMRE DGYETIMVNC 
NPETVSTDYD TSDRLYFESV TLEDVLEIVR IEKPVGVIVQ YGGQTPLKLA RDLEAAGVPI 
IGTSPDAIDK AEDRERFQKM VNKLNLKQPA NATVSNLEEA LLAAEKIGFP LVVRPSYVLG 
GRAMEIVYDL KDLKRYLNNA VKVSNDSPVL LDRFLDDAIE VDVDAICDGK EVMIGGIMEH 
IEQAGVHSGD SACSLPPYSL SEDIQNVMRE QVKAMALELG VVGLMNTQFA VKDGEVYLIE 
VNPRAARTVP FVSKATGLAI AKIGARAMAG QSLASQGLSK EVIPPFYSVK EVVLPFAKFQ 
GVDPLLGPEM RSTGEVMGVG DTFVEAYAKA NLGAGEPIPA GGKALLSVRL NDKNRIIELG 
RAMVAKGFNL EATRGTAEVL NKADVPCSIV NKLSEGRPNI VDAIKNGEYC YIINTTEGRQ 
AIDDSVYIRR EALLNKIPYT TTMNAAFATV NANKADDRAR VHSVQELHKR LV