Gene Syncc9902_0836 details

Gene Information

• Locus tag: Syncc9902_0836
• Symbol: carB
• ID: 3741878
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Synechococcus sp. CC9902
• Kingdom: Bacteria
• Replicon accession: NC_007513
• Strand: -
• Start bp: 836909
• End bp: 840229
• Gene Length: 3321 bp
• Protein Length: 1106 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 637771009
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_376846
• Protein GI: 78184411
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism
• COG ID: [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCACGGC GGACCGATCT GCGTCGCATC CTCCTGGTGG GATCTGGTCC GATCGTGATC 
GGCCAGGCCT GTGAGTTTGA TTACTCCGGA ACCCAGGCCT GCAAAGCCCT TAGGGCAGAA 
GGCTTTGAGG TGGTGTTGGT GAATTCCAAC CCCGCATCGA TCATGACCGA CCCCGGCATG 
GCGGATCGGA CCTACATCGA ACCACTCACC CCTGAAGTGG TGACGCAGGT CATTGAGAAA 
GAACGTCCTG ATGCCCTCTT GCCCACGATG GGGGGGCAAA CAGCTCTCAA CCTCGCAGTC 
ACCCTGGCCG AAAACGGAAC GTTGGATCGT TTCGGGGTGG AGCTCATCGG TGCCGACTTA 
CAGGCAATTC AGAAGGCCGA GGATCGGCTG CTGTTTAAGC AAGCGATGGA ACGAATTGGG 
GTAAGTGTGT GCCCATCGGG CATCGCTTCC ACCCTGGAGG AAGCAGATGC CGTTGGCGCA 
GAGATCAGCA GCTTTCCTCG CATCATTCGA CCGGCATTCA CCCTTGGGGG AAGTGGTGGT 
GGCATTGCTT ACAACCCGGA GGAATTTGCC GCCATTTGCA AAAGCGGGCT GGAAGCGAGT 
CCTGTTTCCC AAATATTGAT TGAGCAATCA CTGCTCGGAT GGAAAGAATT TGAACTCGAG 
GTGATGCGTG ATCTGGCGGA CAACGTCGTG ATCGTCTGCA GCATCGAAAA CCTCGACCCG 
ATGGGGGTAC ATACCGGGGA TTCGATCACT GTTGCTCCAG CGCAAACCCT CACCGATCGG 
GAATACCAGC GACTTCGCGA TCAATCCATC GCCATCATTC GTGAAATCGG CGTTGCTACG 
GGAGGCAGCA ACATTCAGTT CGCCATCAAC CCCGACAACG GCGATGTGGT GGTGATCGAA 
ATGAACCCGA GGGTGAGTCG ATCGTCTGCA CTTGCCAGCA AAGCAACAGG GTTCCCCATC 
GCGAAAATTG CTGCTCGCCT TGCCGTTGGA TACACCCTCG ACGAAATTCT CAACGACATC 
ACAGGCCAAA CACCGGCTTG CTTTGAACCC ACGATCGATT ACGTCGTCAC AAAGATTCCT 
CGCTTTGCCT TTGAAAAGTT CAAAGGCAGT CCGGCGGTTC TCACCACATC GATGAAATCG 
GTCGGTGAAG CCATGGCCAT CGGTCGCTGC TTCGAAGAAT CGTTCCAAAA AGCAATGCGA 
TCGCTGGAAA CCGGCTTTTC AGGATGGGGA GGGGACAGGG ACGAGCCAAA TCTCAGCGAC 
AGCGAAATTG ATCGCCTTCT ACGAACACCA TCACCGGAGC GCATCCTCAC GGTTCGCACA 
GCGATGGTGA ACGGCCGAAG CGATGCCGAC ATCCATCGGA TCAGCAATAT CGACCCTTGG 
TTCTTGGCGA AGCTCCGTCG CATCGTTGAC GCGGAATCAA CATTGATGCG GGGGCGTCAG 
CTGGATGAGC TCGATGCCTC GACCCTTTTA GAAATCAAGC AACTTGGTTT TTCCGATCGT 
CAGATTGCCT GGTGCACGGG AACCGACGAA CTCAGCGTGC GCTCTCATCG ACACAAGCTT 
GATGTGCGAG CCGTGTTTAA AACCGTGGAT ACCTGTGCAG CGGAATTTGC ATCCACCACG 
CCCTATCACT ACTCCACGTA CGAACGGCCG CTCCAAAAAC TGCAAGCCGA TGGAACTCTG 
ATCACCCTGC CAAGTGCGAC GGAAGTTAGC CGCAATAGCG ACCAGCGAAA AATGATGATC 
CTGGGCGGGG GTCCGAATCG CATCGGTCAG GGCATTGAAT TTGATTACTG CTGCTGCCAT 
GCCTCCTTCT CAGCCCAAGA ACAAGGCATC ACCACCGTGA TGGTGAACAG CAACCCCGAG 
ACGGTTTCCA CCGATTACGA CACAAGCGAC AGTCTTTATT TCGAGCCACT CACGCTTGAA 
GACGTGCTGA ACGTAATTGA AGCGGAACGT CCGAACGGCG TTGTTGTGCA ATTTGGCGGG 
CAAACGCCGC TGAAACTCGC CATTCCATTG CTGCGCTGGC TCAACAGCCC GGACGGACAA 
GTCACCGGAA CAGAAATTTG GGGTACATCC CCTGAATCGA TCGATCGCGC TGAAGATCGT 
GAGCAATTTG AAGCAATCCT TCGAGAACTG GACATCCGTC AACCGCGCAA TGGTTTGGCC 
CGCAGTGAAG AGGAAGCACG ATCGATTGCC ACTGTTGTGG GTTACCCCGT TGTGGTGAGG 
CCCTCCTATG TGCTCGGCGG ACGAGCCATG GAAGTGGTGT TCGACGAACA AGAACTCAAT 
CGCTACATGC GCGAAGCGGT ACAGGTCGAA CCGGATCATC CGGTGTTGAT TGACCAGTAC 
CTCGAGAATG CTGTTGAAGT GGATGTGGAT GCGTTATCGG ATCAGGACGG CAACGTCGTG 
ATTGGAGGTT TGATGGAGCA TATCGAGCCT GCGGGAATTC ATTCCGGAGA CTCCGCCTGC 
TGCCTGCCAA CCGTCTCGCT CGGTGAATCC GCACTGCACA CGATTCGGGA ATGGAGCAAA 
GCGTTAGCTA TCTCCCTCAA GGTGAAGGGA TTAATCAACC TCCAATTCGC TGTGCAGCGC 
GACAGCGACG GTGAGGAAGT TGTCTTCATC ATCGAAGCAA ATCCCCGCGC CTCTCGCACG 
GTGCCTTTCG TCGCGAAAGC CACTGGGAAG CCCCTGGCTC GTTTAGCTAC ACGGTTAATG 
GCGGGCGAAT CCCTTGTGGA TGTGGGGCTA ACAGAGGAAC CCCAACCGCC TCTGCAAGCC 
ATAAAAGAAG CAGTACTTCC CTTCCGACGC TTCCCTGGAG CCGACACGGT GCTTGGACCG 
GAAATGCGAT CCACCGGTGA AGTGATGGGT TCAGCCACAA GTTTTGGAAT GGCGTATGCC 
AAAGCCGAGC TGGGGGCTGG CGAAGCCCTC CCCACCCAAG GAACAGTCTT CCTGTCGACC 
CATGACCGGG ACAAATCGTC TCTTGTACCC GTGGCCGCTC GTTTGATCGA GCTGGGTTTT 
GAACTGATGG CAACCGCTGG AACAGCCCAT ACCCTCGGAC AAGCCTCCCT AAGGGTGCAA 
ACGGTTCTCA AAGTGCATGA AGGCCGTCCA AACATCGAAG ATTTGATTCG TTCCAATCAG 
GTTCAGCTCG TCATCAACAC ACCGATCGGT CGCCAAGCTG CTCACGACGA CAAATACTTA 
CGTCGTGCAG CCCTTGATTA CGCCGTACCA ACCGTGACAA CCCTCGCTGG CGCCCGCGCC 
GCTGTGGAAG CGATCGCTGC CATGCAAAGC GAACCCACTC TCAGCATCTA TGCCCTGCAA 
GACGTTCACG CGACGTGCTG A 

 

Protein sequence

MPRRTDLRRI LLVGSGPIVI GQACEFDYSG TQACKALRAE GFEVVLVNSN PASIMTDPGM 
ADRTYIEPLT PEVVTQVIEK ERPDALLPTM GGQTALNLAV TLAENGTLDR FGVELIGADL 
QAIQKAEDRL LFKQAMERIG VSVCPSGIAS TLEEADAVGA EISSFPRIIR PAFTLGGSGG 
GIAYNPEEFA AICKSGLEAS PVSQILIEQS LLGWKEFELE VMRDLADNVV IVCSIENLDP 
MGVHTGDSIT VAPAQTLTDR EYQRLRDQSI AIIREIGVAT GGSNIQFAIN PDNGDVVVIE 
MNPRVSRSSA LASKATGFPI AKIAARLAVG YTLDEILNDI TGQTPACFEP TIDYVVTKIP 
RFAFEKFKGS PAVLTTSMKS VGEAMAIGRC FEESFQKAMR SLETGFSGWG GDRDEPNLSD 
SEIDRLLRTP SPERILTVRT AMVNGRSDAD IHRISNIDPW FLAKLRRIVD AESTLMRGRQ 
LDELDASTLL EIKQLGFSDR QIAWCTGTDE LSVRSHRHKL DVRAVFKTVD TCAAEFASTT 
PYHYSTYERP LQKLQADGTL ITLPSATEVS RNSDQRKMMI LGGGPNRIGQ GIEFDYCCCH 
ASFSAQEQGI TTVMVNSNPE TVSTDYDTSD SLYFEPLTLE DVLNVIEAER PNGVVVQFGG 
QTPLKLAIPL LRWLNSPDGQ VTGTEIWGTS PESIDRAEDR EQFEAILREL DIRQPRNGLA 
RSEEEARSIA TVVGYPVVVR PSYVLGGRAM EVVFDEQELN RYMREAVQVE PDHPVLIDQY 
LENAVEVDVD ALSDQDGNVV IGGLMEHIEP AGIHSGDSAC CLPTVSLGES ALHTIREWSK 
ALAISLKVKG LINLQFAVQR DSDGEEVVFI IEANPRASRT VPFVAKATGK PLARLATRLM 
AGESLVDVGL TEEPQPPLQA IKEAVLPFRR FPGADTVLGP EMRSTGEVMG SATSFGMAYA 
KAELGAGEAL PTQGTVFLST HDRDKSSLVP VAARLIELGF ELMATAGTAH TLGQASLRVQ 
TVLKVHEGRP NIEDLIRSNQ VQLVINTPIG RQAAHDDKYL RRAALDYAVP TVTTLAGARA 
AVEAIAAMQS EPTLSIYALQ DVHATC