| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0976 |
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| Symbol | carB |
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| ID | 4278193 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1138882 |
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| End bp | 1142103 |
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| Gene Length | 3222 bp |
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| Protein Length | 1073 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133742 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_749667 |
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| Protein GI | 114562154 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACAGATAT AAAAAGTATT CTTATCCTAG GTGCCGGTCC AATTGTTATT
GGTCAGGCGT GTGAGTTTGA TTATTCAGGT GCGCAAGCTT GTAAAGCACT TCGTGAAGAA
GGCTATCGCG TTATTCTGGT TAACTCTAAT CCAGCAACAA TTATGACCGA CCCTGAAATG
GCCGATGCAA CTTATATCGA GCCTATTCAT TGGGAAGTGG TACGCAACAT CATTGCCAAA
GAGCGTCCAG ATGCAATTCT ACCGACGATG GGTGGGCAAA CTGCACTGAA CTGCGCGCTT
CAGCTTGAAG CACAAGGCGT ACTAAAAGAG TTTAATGTTG AAATGATTGG TGCGACAGCG
GATGCGATTG ATAAAGCTGA AGACCGTAGT CGTTTCGACA AAGCGATGAA ATCCATTGGT
TTAGACTGCC CGCGTGCGGG TATTGCTCAT AACATGGATG AAGCTTATGG CGTATTAGAT
ATGGTGGGCT TCCCCTGTAT CATTCGTCCG TCTTTCACTA TGGGTGGCAG CGGCGGTGGT
ATTGCCTACA ACAAAGAAGA GTTTGAAGAG ATTTGTTCTC AAGGCTTAGA CTTGTCGCCA
ACTAACGAAT TATTGATTGA TGAATCATTA ATTGGTTGGA AAGAATATGA AATGGAAGTG
GTTCGTGACC GCAACGATAA CTGTATTATC GTATGTGCTA TCGAAAACTT TGACCCAATG
GGTGTTCACA CCGGTGACTC AATTACCGTT GCGCCAGCGC AAACGCTAAC TGACAAAGAA
TACCAATTAA TGCGTAACGC TTCTTTAGCT GTATTACGTG AAATAGGTGT TGAAACAGGT
GGTTCAAACG TACAGTTTGG TATTTGTCCT GATACTGGCC GTATGGTTAT TATTGAGATG
AATCCACGAG TATCGCGTTC ATCTGCTTTA GCGTCTAAAG CGACCGGTTT CCCGATTGCT
AAAATTGCGG CTAAATTGGC TGTAGGTTAT ACCTTAGATG AGCTAAGTAA CGACATTACT
GGCGGTAAAA CACCAGCATC GTTCGAGCCT GCAATCGATT ACGTTGTGAC TAAAATCCCA
CGTTTTAACT TTGAAAAGTT TGCTGGTGCA AATGACCGCC TAACGACTCA AATGAAGTCT
GTCGGTGAAG TTATGGCCAT TGGGCGTACT TTCCAAGAGT CATTGCAAAA AGCGTTACGC
GGCCTTGAAG TGGGACGTAA CGGTTTTGAC TCAGTTGTCG ATTTACAATC TCCTGAAGCC
ATTCAACGTA TTCGCCATGA ACTAAAAGAG CCTGGTTGTG ACCGTATTTG GTACATTGCA
GATGCATTCC GCGCTGGTTT AAGCCGTGAT GATATCTTCA CATTAACCAA TATTGACCAT
TGGTTCTTGG TTCAAATCGA AGATTTGATT ACACAAGAAG CAAAAGTTGC TGAACTTGGT
ATGTCAGGCC TAGAGAAAAA CTACTTACGC CAATTAAAGC GTAAAGGTTT CTCTGATGCA
CGTTTAGCTG ATGTGTTAGG GGTTAATGAA AGCGAAATAC GTAAATTACG TCAACGCCAT
GAAATTCACC CGGTTTATAA GCGTGTCGAT ACTTGTGCTG CTGAATTCTC AACTGATACA
GCTTACATGT ACTCAACGTA TGAAGAAGAG TGTGAAGCTA ACCCATCGAA CCGTGACAAA
ATCATGATTC TGGGTGGAGG CCCTAACCGC ATTGGTCAAG GTATTGAGTT CGATTATTGC
TGTGTTCATG CTGCATTAGC ATTACGTGAA GACGGTTATG AAACCATCAT GGTTAACTGT
AACCCTGAAA CGGTATCAAC CGACTACGAT ACATCTGACC GCTTATACTT CGAACCTGTG
ACGCTAGAAG ACGTACTCGA AATCGTGCGT ATCGAAAAAC CAAAAGGCGT AATCGTTCAA
TACGGTGGTC AAACTCCGCT TAAACTCGCG CGAGAATTAG AAGCCGCAGG CGTACCGATT
ATTGGTACCA GCCCGGATGC GATTGACCGT GCAGAAGACC GCGAACGTTT CCAGCAAGCG
ATTCAACGTT TGAACATGAA GCAGCCAGAA AATGCGACAG TGACAACTGT TGAAAGTGCT
GTGATTGAAG CTGAAAAAAT AGGTTATCCG TTGGTTGTAC GCCCATCTTA TGTATTAGGC
GGTCGTGCGA TGGAAATCGT ATACGACAAA CAAGATTTAC TACGCTACTT CAATGAAGCG
GTTAAAGTCT CTAATGCTTC ACCAGTATTA CTTGATCACT TCTTAGATGA TGCGATTGAA
GTGGATATCG ATGCTGTGTG TGACGGTGAA ACTGTGGTGG TTGGCGCCAT TATGGAACAC
ATCGAACAAG CAGGTGTTCA CTCTGGTGAC TCAGGCTGTT CATTGCCACC TTACACCTTG
AGTGCTGATA TTCAGGCTAG AATGCGTGAC CAAGTGTCTA AACTGGCTTT TGAATTAGGC
GTAATTGGCT TAATGAACGT GCAGTTTGCG GTAAAAGATA ACGAAATCTA TATGATTGAA
GTTAACCCGC GTGCCGCACG TACAGTACCA TTTGTGTCTA AAGCGACTGG CGTTCCGCTA
GCTAAAATTG CAGCACGAGT GATGGCTGGC CAAAGCTTAA TTTCGCAAAA CTTTACTAAA
GAAGTGATTC CACCTTATTT TTCAGTAAAA GAAGTAGTCT TACCGTTTAA TAAGTTCCCA
GGTGTTGACC CGTTATTAGG CCCAGAAATG CGCTCAACCG GTGAAGTCAT GGGCGTGGGT
GATACTTTTG CTGAAGCTTA TGCAAAAGCA CAGCTTGGTG CAACATCTGA AGTGCCTAAG
TCGGGTCGTG CGTTATTATC TGTACGTAAC AGTGATAAAA AACGCGTTGC TGATTTAGCC
TCTAAGCTGA TTGAGCTAGG TTATGAAATT GATGCCACTC ATGGTACCGC GATTATTTTA
GGTGAAGCAG GGATTAACCC TCGCTTAGTT AACAAAGTGC ATGAAGGTCG TCCACACATT
CTTGATCGTA TTAAAAATGG TGAATATACC TACATTGTTA ACACAACTGA AGGTCGTCAA
GCAATTGAAG ACTCACGTCA GATCCGTCGT GGAGCTTTGC GATATAAAGT GAATTACACT
ACGACATTAA ATGCTGCTTT TGCGACGTGT TTAGCGCATT CTGCAGATGA TCGTATTAAG
GTGACGTCTT TACAAGAGTT ACACAAACGC ATCAAAAGCT AA
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| Protein sequence | MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM
ADATYIEPIH WEVVRNIIAK ERPDAILPTM GGQTALNCAL QLEAQGVLKE FNVEMIGATA
DAIDKAEDRS RFDKAMKSIG LDCPRAGIAH NMDEAYGVLD MVGFPCIIRP SFTMGGSGGG
IAYNKEEFEE ICSQGLDLSP TNELLIDESL IGWKEYEMEV VRDRNDNCII VCAIENFDPM
GVHTGDSITV APAQTLTDKE YQLMRNASLA VLREIGVETG GSNVQFGICP DTGRMVIIEM
NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDELSNDIT GGKTPASFEP AIDYVVTKIP
RFNFEKFAGA NDRLTTQMKS VGEVMAIGRT FQESLQKALR GLEVGRNGFD SVVDLQSPEA
IQRIRHELKE PGCDRIWYIA DAFRAGLSRD DIFTLTNIDH WFLVQIEDLI TQEAKVAELG
MSGLEKNYLR QLKRKGFSDA RLADVLGVNE SEIRKLRQRH EIHPVYKRVD TCAAEFSTDT
AYMYSTYEEE CEANPSNRDK IMILGGGPNR IGQGIEFDYC CVHAALALRE DGYETIMVNC
NPETVSTDYD TSDRLYFEPV TLEDVLEIVR IEKPKGVIVQ YGGQTPLKLA RELEAAGVPI
IGTSPDAIDR AEDRERFQQA IQRLNMKQPE NATVTTVESA VIEAEKIGYP LVVRPSYVLG
GRAMEIVYDK QDLLRYFNEA VKVSNASPVL LDHFLDDAIE VDIDAVCDGE TVVVGAIMEH
IEQAGVHSGD SGCSLPPYTL SADIQARMRD QVSKLAFELG VIGLMNVQFA VKDNEIYMIE
VNPRAARTVP FVSKATGVPL AKIAARVMAG QSLISQNFTK EVIPPYFSVK EVVLPFNKFP
GVDPLLGPEM RSTGEVMGVG DTFAEAYAKA QLGATSEVPK SGRALLSVRN SDKKRVADLA
SKLIELGYEI DATHGTAIIL GEAGINPRLV NKVHEGRPHI LDRIKNGEYT YIVNTTEGRQ
AIEDSRQIRR GALRYKVNYT TTLNAAFATC LAHSADDRIK VTSLQELHKR IKS
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