| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_2006 |
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| Symbol | |
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| ID | 3962230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 2161639 |
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| End bp | 2164935 |
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| Gene Length | 3297 bp |
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| Protein Length | 1098 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637916826 |
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| Product | carbamoyl-phosphate synthase, large subunit |
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| Protein accession | YP_523262 |
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| Protein GI | 89900791 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.488825 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAAAC GTACCGACAT CAAAAGCATC CTCATCATTG GCGCCGGCCC GATCATCATC
GGCCAGGCTT GCGAGTTTGA CTACTCTGGT GTGCAGGCCT GCAAGGCGTT GCGCGAAGAA
GGCTTCAAAG TCATTCTGAT CAACAGCAAC CCGGCCACCA TCATGACCGA CCCGGCCACG
GCGGACGTCA CCTACATCGA GCCGATCACC TGGCAGACGG TTGAAAAAAT CATCGCCAAG
GAGCGTCCCG ATGCGATCCT GCCGACCATG GGCGGTCAGA CCGCGCTGAA CTGTGCGCTC
GACCTGTGGC ACCACGGCGT GCTGGAAAAG TACAACGTCG AATTGATTGG CGCCAAGCCC
GAGGCCATCG ACAAGGCCGA AGATCGCCTG AAGTTCAAGG ACGCCATGAC CAAAATTGGT
CTGGGTTCGG CCCGCTCCGG CATTGCCCAC AGCATGGAAG AAGCCTGGGG CGTGCAAAAG
ACGGTGGGTT TCCCGACCGT GATCCGGCCC AGTTTCACGC TGGGCGGCAC TGGTGGCGGC
ATTGCCTACA ACTCGGAAGA ATTCGAAGTC ATCTGCAAGC GCGGTCTGGA GGCGTCGCCG
ACCAATGAGC TGCTGATTGA AGAATCGCTG CTCGGCTGGA AAGAGTACGA GATGGAGGTG
GTGCGCGACC AGGCTGACAA CTGCATCATC ATTTGTTCCA TTGAAAACCT GGATCCGATG
GGTGTGCACA CGGGCGACTC GATCACGGTC GCGCCGGCGC AGACGCTGAG CGACAAGGAG
TACCAGATTC TGCGCAACGC CAGTCTGGCC GTGCTGCGCG AAATCGGCGT CGATACCGGT
GGCTCCAACG TGCAGTTTTC CATCAACCCC GAAGATGGGC GCATGGTGGT GATCGAGATG
AATCCGCGCG TCAGCCGCTC CTCGGCGCTG GCTTCCAAGG CTACTGGTTT TCCGATTGCC
AAGATCGCCG CCAAACTCGC AGTCGGTTAC ACGCTGGACG AATTGCGCAA TGACATCACG
GGCGGGGCCA CACCCGCCAG CTTTGAGCCG AGCATTGACT ACGTGGTGAC GAAGATTCCG
CGTTTCGCGT TCGAAAAATT CCCGGCGGCC GACAGCCGCC TGACGACGCA GATGAAATCG
GTCGGTGAAG TGATGGCGAT GGGGCGCACC TTTCAGGAGT CGTTCCAGAA AGCCCTGCGT
GGCCTCGAAG TTGGCGTCGA TGGCATGAAT GAGAAAACGC AGGACCGTGA AGTACTGGAA
AAAGAGTTGG GCGAGCCCGG CCCCGAGCGT ATCTGGTACG TGGGCGACGC GTTTGCCGCC
GGCTGGAGCG TGGACGAGGT GTTTGAGCTG ACCAAAATTG ACCGTTGGTT TCTGGTGCAG
ATTGAGCAGA TCGTCAAGAT TGAGCTGGAG ATTGAGCGCT TGCCCGCGCC GGAACAGGGC
TCCGCGCTGG ATGCGATGGA CGGCGCGACC TTGCGCGCTT TGAAGCAAAA AGGATTTTCC
GATCGGCGCC TGGCCAAGCA GTTCAAGACC ACCGACACGG CTGTGCGTGA GAAGCGCCAC
GCCCTGGGTG TGCGCCCGGT CTATAAGCGT GTTGACACCT GCGCGGCCGA GTTCGCCACC
AACACGGCGT ATCTGTACTC GACCTATGAG TCGTCCAGCC CGTTCGACAC CGGTAGCGAG
TGCGAGGCCG ATCCCACGGA CCGGAAAAAA ATCATGGTGC TCGGCGGTGG CCCGAACCGC
ATTGGCCAGG GCATTGAGTT TGACTACTGC TGTGTGCATG CGGCGCTGGC GATGCGCGAG
GACGGCTATG AGACCATCAT GGTCAACTGC AACCCCGAGA CTGTGTCGAC CGACTACGAC
ACCTCGGATC GTCTCTATTT CGAGCCGGTC ACGCTGGAAG ACGTGCTTGA AATTGTGGAC
AAGGAAAAGC CCTATGGCGT GATCGTGCAG TACGGGGGCC AGACACCACT CAAACTGGCG
TTGGCGCTGG AAGCCAACGG CGTGCCCATC ATCGGCACCT CGCCTGACAT GATTGACGCC
GCCGAAGACC GTGAGCGCTT TCAGAAGTTG CTGCATCAAC TCGGGCTTCG TCAACCTGCC
AACGCGACTG CCCGCACCGA GCCCGAGGCG CTTGAAAAAG CGGCCGCGCT GGGCTACCCG
CTGGTGGTGC GACCGAGCTA TGTGCTGGGT GGCCGGGCCA TGGAAATTGT GCATGAGCAG
CGCGACCTGG AGCGCTACAT GCGCGAGGCG GTCAAGGTCA GCCACGATTC GCCGGTGCTG
CTGGACCGTT TCTTGAATGA CGCCATTGAG TGCGATGTGG ACTGTGTGCG CGACGCGCAG
GGGCAGACCT TCATCGGCGG CGTCATGGAA CACATTGAAC AGGCGGGCGT GCACAGTGGC
GACTCGGCCT GCTCGCTGCC GCCCTACAGC TTGTGTGCCG AAACAGTGAC AGAGATCAGG
CGGCAAACGG CGGCCATGGC CGAGGCCTTG AACGTGGTCG GCTTGATGAA CGTGCAGTTC
GCCATTCAGA CCCTGGAGGG CGCTGACGTT ATTTTTGTGC TGGAAGTCAA TCCAAGAGCG
TCCCGCACCG TGCCCTTTGT GTCCAAAGCC ACCGGTGTTC AGTTGGCCAA GGTGGCGGCC
CGCTGCATGG TCGGTCAGTC GCTCGCCTCT CAGGGCATCG GGACGGAAGT GACGCCACCC
TATTTCAGCG TGAAAGAAGC GGTGTTCCCC TTTGTCAAAT TTCCCGGCGT TGATACCATT
CTTGGCCCCG AGATGAAGTC CACTGGCGAG GTGATGGGCG TGGGCAAGAC TTTTGGCGAG
GCCTTTGTGA AGTCTCAAAT CGGGGCCGGC ACCAAATTGC CACGGCCGCG CACCCCCTCG
GGCGAGCCTG CGGGCAAGGT GTTCATCTCG GTCAAAAACA ACGACAAACC CCGTGTCATT
GAGGTCGCGC GTGATCTGGT GGAACTGGGG TTCACGCTGC TGGCAACCAA GGGAACGGCC
TTGGCCATCA ACGCGGCCGG TGTGAGCTGT GCCACGGTTA ACAAGGTGAC CGAAGGGCGC
CCCAACATTG TGGACATGAT CAAGAACCAG GAAATTGCGC TGGTCATCAA TACAGTGGAA
GAGCGGCGCA ATGCGATCGC GGACTCGCGT CATATTCGCA CCTCGGCTTT GTTCGGGCGG
GTAACCACCT TCACGACCAT TGCCGGCGCC GAGGCGGCCG TGCAGGGAAT GCGCTACATG
GACGACCTGA GTGTTATTTC GATCCAGGAA ATGCATGCCC AGTTGGCGGG TGCTTGA
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| Protein sequence | MPKRTDIKSI LIIGAGPIII GQACEFDYSG VQACKALREE GFKVILINSN PATIMTDPAT
ADVTYIEPIT WQTVEKIIAK ERPDAILPTM GGQTALNCAL DLWHHGVLEK YNVELIGAKP
EAIDKAEDRL KFKDAMTKIG LGSARSGIAH SMEEAWGVQK TVGFPTVIRP SFTLGGTGGG
IAYNSEEFEV ICKRGLEASP TNELLIEESL LGWKEYEMEV VRDQADNCII ICSIENLDPM
GVHTGDSITV APAQTLSDKE YQILRNASLA VLREIGVDTG GSNVQFSINP EDGRMVVIEM
NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDELRNDIT GGATPASFEP SIDYVVTKIP
RFAFEKFPAA DSRLTTQMKS VGEVMAMGRT FQESFQKALR GLEVGVDGMN EKTQDREVLE
KELGEPGPER IWYVGDAFAA GWSVDEVFEL TKIDRWFLVQ IEQIVKIELE IERLPAPEQG
SALDAMDGAT LRALKQKGFS DRRLAKQFKT TDTAVREKRH ALGVRPVYKR VDTCAAEFAT
NTAYLYSTYE SSSPFDTGSE CEADPTDRKK IMVLGGGPNR IGQGIEFDYC CVHAALAMRE
DGYETIMVNC NPETVSTDYD TSDRLYFEPV TLEDVLEIVD KEKPYGVIVQ YGGQTPLKLA
LALEANGVPI IGTSPDMIDA AEDRERFQKL LHQLGLRQPA NATARTEPEA LEKAAALGYP
LVVRPSYVLG GRAMEIVHEQ RDLERYMREA VKVSHDSPVL LDRFLNDAIE CDVDCVRDAQ
GQTFIGGVME HIEQAGVHSG DSACSLPPYS LCAETVTEIR RQTAAMAEAL NVVGLMNVQF
AIQTLEGADV IFVLEVNPRA SRTVPFVSKA TGVQLAKVAA RCMVGQSLAS QGIGTEVTPP
YFSVKEAVFP FVKFPGVDTI LGPEMKSTGE VMGVGKTFGE AFVKSQIGAG TKLPRPRTPS
GEPAGKVFIS VKNNDKPRVI EVARDLVELG FTLLATKGTA LAINAAGVSC ATVNKVTEGR
PNIVDMIKNQ EIALVINTVE ERRNAIADSR HIRTSALFGR VTTFTTIAGA EAAVQGMRYM
DDLSVISIQE MHAQLAGA
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