Gene Pden_1879 details

Gene Information

• Locus tag: Pden_1879
• Symbol: carB
• ID: 4580538
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Paracoccus denitrificans PD1222
• Kingdom: Bacteria
• Replicon accession: NC_008686
• Strand: -
• Start bp: 1880355
• End bp: 1883687
• Gene Length: 3333 bp
• Protein Length: 1110 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 639769199
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_915670
• Protein GI: 119384614
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism
• COG ID: [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 10
• Fosmid unclonability p-value: 0.99136
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCGAAGA GAACCGATAT CAAATCCATC CTGATCATCG GCGCCGGTCC CATCGTCATT 
GGCCAGGCCT GCGAATTCGA CTATTCCGGC GCCCAGGCCT GCAAGGCGCT GCGCGAGGAA 
GGCTATCGGG TCATCCTGGT CAACTCGAAC CCCGCCACGA TCATGACCGA TCCCGAGATG 
GCGGATGCGA CCTATATCGA ACCGATCACC CCCGAGGTGG TCGAGAAGAT CATCGCCAAG 
GAGCGGCCCG ATGCGCTGTT GCCGACCATG GGCGGGCAGA CGGGCCTGAA CACCGCGCTG 
GCGCTGGCGG ATATGGGCGT GCTGAACCGC TATGGCGTCG AGCTGATCGG CGCGCAGCGT 
GCCGCCATCG AGATGGCCGA GGACCGCAAG CTGTTCCGCG AGGCCATGGA CCGCATCGGC 
CTGGAGAACC CGCGCGCCAC CATCGTCGCG GCGCCCAAGC ATCCGAACGG CCGCTATGAC 
GTCGCGGCCG GCGTCGCCAT GGCGATGGAG GCGCTGGAGG AGATCGGCCT GCCCGCCATC 
ATCCGGCCTG CGTTCACGCT GGGCGGCACC GGCGGCGGCG TCGCCTATAA CCGCGACGAT 
TACGAGCGCA TCGTGCGGTC GGGGCTGGAA GCCTCGCCCG TGGCGCAGGT GCTGGTGGAC 
GAGAGCCTGC TGGGCTGGAA AGAGTATGAG ATGGAGGTCG TGCGCGACCG CGCCGACAAT 
GCCATCATCG TCTGCTCGAT CGAGAACGTC GACCCGATGG GCGTGCATAC CGGCGACTCG 
ATCACCGTGG CCCCGGCGCT GACCCTGACC GATCGCGAAT ACCAGCGCAT GCGCAACGGC 
TCCATCGCCG TGCTGCGCGA GATCGGCGTT GAGACGGGCG GCTCGAACGT GCAATGGGCG 
ATCAACCCCA AGGACGGCCG CATGGTGGTG ATCGAGATGA ATCCGCGCGT GTCGCGGTCC 
TCGGCGCTGG CCTCGAAGGC GACGGGTTTC CCCATCGCCA AGATCGCCGC CAAGCTGGCG 
GTGGGCTATA CGCTGGACGA GTTGGACAAC GACATCACCC GCGTGACGCC GGCGAGCTTC 
GAGCCCTCGA TCGACTATGT CGTGACCAAG ATCCCGCGCT TCGCCTTCGA GAAGTTCCCG 
GGCTCCAGGC CCGAGCTGAC CACGGCGATG AAATCCGTGG GCGAGGTCAT GGCCATCGGC 
CGGACCTTCC ACGAATCGCT GCAAAAGGCG CTGACCTCGA TGGAGAACGG GCTGACCGGG 
CTTGACGAGA TCGAGATCCC CGGCGCCCCC GACAAGGCCG CCATCGTCAA GGCGATCAGC 
CAGCAGACCC CCGACCGGCT GCGCCTGATC GCCCAGGCCA TGCGCCACGG GCTGAGCGAC 
GACGAGATCC AGCATGCGAC CGCCTTCGAT CCCTGGTTCC TGGCCCGGCT GCGCGAGATC 
GTCGATGCCG AGGCCGATGT GCGCGCCCAG GGACTGCCCG AGGATGCCGA GGGCTTGCGG 
CGGCTGAAGA TGATGGGCTT CACCGACGCC CGGCTGGCGA AGCTTGCCGG CAAGCCCGAG 
GCCGAGATCC GCAAGGCCCG CCGCGCCCAT GACCTGCACC CGGTCTTCAA GCGCATCGAC 
ACCTGCGCCG CCGAGTTCGA GGCCCAGACC CCCTATATGT ATTCGACCTA CGAGGCGCCG 
GCGATGGGCG AGGTCGAGAA CGAGGCCCGG CCCAGCGACC GCAAGAAGGT GGTGATCCTG 
GGCGGCGGGC CGAACCGCAT CGGCCAGGGC ATCGAGTTCG ACTATTGCTG CTGTCACGCC 
TGTTTCGCGC TGACCAAGGC CGGCTACGAG ACGATCATGG TCAACTGCAA CCCCGAGACC 
GTGTCCACCG ATTACGACAC CTCGGATCGG CTGTATTTCG AGCCGCTGAC CCTGGAGCAT 
GTGCTGGAGA TCCTGCGCAT CGAGCAAGAG AACGGTACGC TGCACGGCGT CATCGTCCAG 
TTCGGCGGCC AGACGCCGCT GAAGCTTGCC AATGCGCTGG AGGAAGAAGG CATCCCGATC 
CTGGGCACCA CGCCGGACGC CATCGACCTG GCCGAGGATC GCGAGCGGTT CCAGAAGCTG 
CTGAACGACC TGGACCTGAA ACAGCCGATC AACGGCATTG CCCATAGCGA TGCCGAGGCC 
ATCGAGATCG CCGGCCGCAT CGGCTTTCCG CTGGTCATCC GCCCTTCCTA TGTCCTTGGC 
GGTCGCGCGA TGGAGATCGT GCGCGACATG GACCAGTTGA ACCGTTATAT CCGCGAGGCT 
GTGCAGGTTT CGGGCGACAG TCCGGTGCTG CTCGACAGCT ATCTCTCGGG CGCCATCGAG 
GTCGATGTCG ACGCGCTGTC CGACGGCGAG ACCGTGCATG TCGCGGGCAT CATGGAGCAT 
ATCGAGGAAG CCGGCGTGCA TTCCGGCGAC TCGGCCTGTT CGCTGCCGCC GCATACGCTG 
GACGCTGCCA CCATCGCCGA GCTGAAGACC CAGACCGAAG CCATGGCCAA GGCGCTGAAC 
GTCGTCGGGC TGATGAACGT GCAGTTCGCG CTGAAGGACG GCGCGATCTA TGTGCTGGAG 
GTCAACCCGC GCGCCTCGCG CACCGTGCCC TTCGTCGCCA AGGCCACCGA CAGCGCCATC 
GCCTCGATCG CGGCGCGGCT GATGGCGGGC GAGCCGATGT CGAACTTCCC CGCCCGCCCG 
GCCTATCCCG AGGGCGTCGG CCCCGACGAT CCGCTGCCCT TCGCCGACCC GCTGACGCTG 
GCCGACCCGA ACACGCCCTG GTTCTCGGTC AAGGAGGCGG TGCTGCCCTT CGCCCGCTTC 
CCCGGCGTCG ATACGCTGCT TGGCCCCGAG ATGCGCTCGA CCGGCGAAGT CATGGGCTGG 
GATCGCAGCT TCCCGCGCGC CTTCCTCAAG GCGCAGATGG GGGCGGGCAC GCAATTGCCC 
GAAAGCGGCC TAGTCTTCGT CTCGGTGCGC GACGCCGACA AGACCGAGGC GCTGGCCGAG 
GCGGCGCGCG AGCTGACCGC CATGGGCTTC AAGCTGGTTG CCACCCGCGG CACGGCCGAA 
TTCCTGCGCG GCGCGGGGGT CGAGACCGAA CTGGTCAACA AGGTCTATGA GGGCCGCCCG 
AACATCGTGG ACCGCCTGAA GAACGGCGAG ATCGTCATGG TGCTGAACAC CACCGAGGGC 
GCGCAGGCCA TCGCCGACTC GCGCGAGATT CGCGCGGTCG CGCTGAACGA CAAGATCCCC 
TATTACACCA CGGCCGCCGG CAGCATTGCC GCGGTCGCGG CGATCAAGTC GCGCGGAGAG 
GGTGAAGTCG GGGTCAGGTC GCTTCAAGCC TAG 

 

Protein sequence

MPKRTDIKSI LIIGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM 
ADATYIEPIT PEVVEKIIAK ERPDALLPTM GGQTGLNTAL ALADMGVLNR YGVELIGAQR 
AAIEMAEDRK LFREAMDRIG LENPRATIVA APKHPNGRYD VAAGVAMAME ALEEIGLPAI 
IRPAFTLGGT GGGVAYNRDD YERIVRSGLE ASPVAQVLVD ESLLGWKEYE MEVVRDRADN 
AIIVCSIENV DPMGVHTGDS ITVAPALTLT DREYQRMRNG SIAVLREIGV ETGGSNVQWA 
INPKDGRMVV IEMNPRVSRS SALASKATGF PIAKIAAKLA VGYTLDELDN DITRVTPASF 
EPSIDYVVTK IPRFAFEKFP GSRPELTTAM KSVGEVMAIG RTFHESLQKA LTSMENGLTG 
LDEIEIPGAP DKAAIVKAIS QQTPDRLRLI AQAMRHGLSD DEIQHATAFD PWFLARLREI 
VDAEADVRAQ GLPEDAEGLR RLKMMGFTDA RLAKLAGKPE AEIRKARRAH DLHPVFKRID 
TCAAEFEAQT PYMYSTYEAP AMGEVENEAR PSDRKKVVIL GGGPNRIGQG IEFDYCCCHA 
CFALTKAGYE TIMVNCNPET VSTDYDTSDR LYFEPLTLEH VLEILRIEQE NGTLHGVIVQ 
FGGQTPLKLA NALEEEGIPI LGTTPDAIDL AEDRERFQKL LNDLDLKQPI NGIAHSDAEA 
IEIAGRIGFP LVIRPSYVLG GRAMEIVRDM DQLNRYIREA VQVSGDSPVL LDSYLSGAIE 
VDVDALSDGE TVHVAGIMEH IEEAGVHSGD SACSLPPHTL DAATIAELKT QTEAMAKALN 
VVGLMNVQFA LKDGAIYVLE VNPRASRTVP FVAKATDSAI ASIAARLMAG EPMSNFPARP 
AYPEGVGPDD PLPFADPLTL ADPNTPWFSV KEAVLPFARF PGVDTLLGPE MRSTGEVMGW 
DRSFPRAFLK AQMGAGTQLP ESGLVFVSVR DADKTEALAE AARELTAMGF KLVATRGTAE 
FLRGAGVETE LVNKVYEGRP NIVDRLKNGE IVMVLNTTEG AQAIADSREI RAVALNDKIP 
YYTTAAGSIA AVAAIKSRGE GEVGVRSLQA