Gene Saro_2230 details

Gene Information

• Locus tag: Saro_2230
• Symbol: carB
• ID: 3916546
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Novosphingobium aromaticivorans DSM 12444
• Kingdom: Bacteria
• Replicon accession: NC_007794
• Strand: -
• Start bp: 2369993
• End bp: 2373316
• Gene Length: 3324 bp
• Protein Length: 1107 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640444985
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_497502
• Protein GI: 87200245
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism
• COG ID: [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.497608
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCAAAC GCACTGACAT CTCCTCGATC CTGATCATCG GCGCCGGGCC GATCATCATC 
GGCCAGGCTT GCGAGTTCGA TTATTCGGGC ACGCAGGCGG TGAAGGCGCT CAAGGAAGAG 
GGCTATCGCA TCATCCTGGT CAACTCGAAC CCCGCGACGA TCATGACCGA TCCGGATATG 
GCGCACGCGA CCTATGTCGA GCCGATCACG CCCGAAGTCG TCGCCAGGAT CATCGAGAAG 
GAGCGCCCCG ATGCGCTGCT CCCCACGATG GGCGGGCAGA CCGCGCTCAA CACCGCGCTC 
GCGCTGTTCA ACGATGGCAC GCTGGAAAAG TATGGCGTCC AGATGATCGG CGCCAATGCC 
GATGCGATCG ACAAGGCCGA AGACCGCCAG CGCTTCCGCG AGGCGATGGA CAAGATCGGC 
CTCGAATCCG CGCGTTCGGG CGTGGCACAC ACCATCGACG AAGCGCTTGA GGTTCTCGAG 
CGCACCGGCT TGCCCTCGAT CATCCGCCCC AGCTTCACCA TGGGCGGCAC CGGCGGCGGC 
ATTGCCTACA ACAAGGAAGA GTTCGTCAAG ATCGTGAAGG GCGGGCTCGA GGCCTCGCCC 
ACCACCGAAG TCCTGATCGA GGAATCGCTC CTCGGCTGGA AGGAATACGA GATGGAGGTT 
GTCCGCGACA GGAAGGACAA CGCCATCATC ATCTGCTCGA TCGAGAACGT CGATCCGATG 
GGCGTCCACA CCGGCGACTC GATCACCGTC GCGCCCGCGT TGACGCTGAC CGACAAGGAA 
TACCAGATCA TGCGCAACGC CAGCATCGCT GTGCTGCGCG AGATCGGTGT CGAGACCGGC 
GGTTCCAACG TGCAGTTCGC GGTCAACCCC GCCGACGGCC GCCTGATCGT GATCGAGATG 
AACCCGCGCG TCTCGCGCTC CTCGGCGCTG GCGTCGAAGG CCACCGGCTT CCCGATCGCC 
AAGGTCGCGG CCAAGCTCGC CGTGGGCTAT ACGCTCGACG AGATCATGAA CGACATCACC 
GGGGCCACCC CGGCGGCGTT CGAGCCGACC ATCGACTACG TCGTCACCAA GATCCCGCGC 
TTCGCGTTCG AGAAGTTCAA GGGCTCCGAA CCGCTGCTCG GCACCGCGAT GAAGTCGGTT 
GGCGAAGTCA TGGCGATCGG CCGCAACATC AAGGAATCGA TGCAGAAGGC CCTGCGCGGC 
CTCGAAACCG GCCTCGACGG CTTCAACCGC GTGGTCGAGC TGGAAGGCGC CAGCCGCGAC 
GAGATCACCG CCGCGCTCGC CCGCGCCACG CCCGAACGCC TGCTGGTCAT CGCCCAGGCC 
TTCCGCGAAG GCCTGTCTGT CGATGAAGTC CATGCGGTCA CCAAGTACGA GCCCTGGTTC 
CTGCGCCACA TCCACGAGAT CGTGAGCGAG GAAAAGGCCA TACAGCAGGA CGGCTTGCCC 
AACGACGCCG CCGGCCTGCG CCGGCTCAAG GCGATGGGCT TTTCCGACAA GCGGCTGGCG 
ACGCTCGCCG TGCGTTCGGT CGGTGTTGCG GGCGGGTTGG GCGAGACCCA GGCCAAGCGC 
TCGGGCCTGC TGCACGATAC TTTGCGCGCC ATGGCCGGTG CCACCAGCGA AGACGAGGTG 
CGCGCGCTAC GCCACAAGCT CGGCGTGCGC CCGGTGTTCA AGCGCATCGA TAGCTGCGCG 
GCCGAGTTCG AGGCGGTCAC GCCCTATATG TACTCGACCT ACGAAGGCGC GCTGTTCGGC 
GAGCCCGAGA ACGAGGCGAA CCCGTCCGAC CGCAAGAAGA TCGTGATCCT CGGCGGCGGC 
CCGAACCGCA TCGGGCAGGG CATCGAGTTC GACTACTGCT GCTGCCACGC ATGCTACGCG 
CTGGATGAGG CAGGGTTCGA GACCATCATG GTCAACTGCA ACCCGGAAAC CGTGTCGACC 
GACTACGACA CTTCCGATCG ACTCTACTTC GAGCCGCTGA CGGCCGAGGA CGTGCTGGAA 
ATCCTCGCGG TCGAGCAATC GAAGGGCGAA CTGGTCGGCG TGATCGTGCA GTTCGGCGGA 
CAGACCCCGC TCAAGCTGGC GCAGGCGCTG CAGGATGCGG GCATCCCGAT CCTCGGCACG 
TCGCCGGACT CGATCGACCT GGCCGAAGAC CGCGAGCGCT TTGCCGCGCT GGTCGCCAGG 
CTCGGGCTCA AGCAGCCGGC CAACGGCATC GCCCGCAGCC GCGACGAGGC CGTCGCGGTG 
GCCAGTCGCA TCGGCTATCC GGTTCTCATC CGTCCCAGCT ATGTGCTTGG TGGCCGCGCG 
ATGGAAATCG TCGACAGCCA GGCCCAGCTC GACGACTACA TCGCCACCGC CGTTCAGGTC 
TCGGGTGACA GCCCGGTGCT GATCGACCAG TACCTGCGCG ATGCGATCGA GTGCGACGTC 
GATGCGCTGG CCGATGGCGA CGAAGTCACC GTCGCTGGCG TCATGCAGCA CATCGAGGAA 
GCCGGCATCC ACTCGGGCGA CAGTGCCTGC ACCCTGCCGC CTTACAGCCT GCCGGCCGAG 
ATCGTGGCCG AGATGGAGCG CCAGGCGGTC CTTCTCGCGC GCGGCCTCGA CGTGCGCGGT 
CTGATGAACA TCCAGTTCGC GGTGAAGGAC GGCGAGGTCT ACCTGATCGA GGTCAACCCG 
CGCGCCAGCC GTACCGTGCC CTTCGTCGCC AAGGCCGTGG GCCAGCCCAT CGCCAAGTTT 
GCAGCTCGCA TCATGGCGGG TGAAAAGCTG ACCGACCTCC CGCCGATCAA GCGCGAGATC 
GACTACATGG CGGTCAAGGA AGCTGTGTTC CCGTTTGCCC GTTTCCCCGG CATCGACCCG 
GTGCTTTCGC CCGAGATGAA GTCGACGGGC GAAGTCATGG GCATCGATGG AACCTTCGCG 
GTCGCCTTCG CCAAGTCGCA GCTCGGCGCG GGTGTGCGCC TGCCGCAGGG CGGGACGCTG 
TTCGTCTCGG TCAAGGATTC GGACAAGCCG GTGGTTCTGC CCGCCGTGCG CAAGCTGGCC 
GAACTGGGCT TCCGCATTGT CGCCACCGGC GGCACCGCTC GCTACCTTTC GGACGAGGGC 
GTGAACGTCG AGCGTGTGAA CAAGGTGGCC GAAGGCCGTC CGCATATCGT CGATCGCATC 
ATCGACGGCG AGATCGCCTT GATCTTCAAC ACCACCGAAG GTTGGCAGAG CCACAAGGAC 
TCGCAGTCGA TCCGCGCTTC GGCACTGGGG GCGAAGGTGC CGTACTTCAC GACTGCCGCC 
GCATCGGTTG CAACAGTTGA GGCGATCGAG GCTCTGCGGA CTGCCGAACT TGAAGTGCGT 
TCGTTGCAAG ACTATTATGG CTGA 

 

Protein sequence

MPKRTDISSI LIIGAGPIII GQACEFDYSG TQAVKALKEE GYRIILVNSN PATIMTDPDM 
AHATYVEPIT PEVVARIIEK ERPDALLPTM GGQTALNTAL ALFNDGTLEK YGVQMIGANA 
DAIDKAEDRQ RFREAMDKIG LESARSGVAH TIDEALEVLE RTGLPSIIRP SFTMGGTGGG 
IAYNKEEFVK IVKGGLEASP TTEVLIEESL LGWKEYEMEV VRDRKDNAII ICSIENVDPM 
GVHTGDSITV APALTLTDKE YQIMRNASIA VLREIGVETG GSNVQFAVNP ADGRLIVIEM 
NPRVSRSSAL ASKATGFPIA KVAAKLAVGY TLDEIMNDIT GATPAAFEPT IDYVVTKIPR 
FAFEKFKGSE PLLGTAMKSV GEVMAIGRNI KESMQKALRG LETGLDGFNR VVELEGASRD 
EITAALARAT PERLLVIAQA FREGLSVDEV HAVTKYEPWF LRHIHEIVSE EKAIQQDGLP 
NDAAGLRRLK AMGFSDKRLA TLAVRSVGVA GGLGETQAKR SGLLHDTLRA MAGATSEDEV 
RALRHKLGVR PVFKRIDSCA AEFEAVTPYM YSTYEGALFG EPENEANPSD RKKIVILGGG 
PNRIGQGIEF DYCCCHACYA LDEAGFETIM VNCNPETVST DYDTSDRLYF EPLTAEDVLE 
ILAVEQSKGE LVGVIVQFGG QTPLKLAQAL QDAGIPILGT SPDSIDLAED RERFAALVAR 
LGLKQPANGI ARSRDEAVAV ASRIGYPVLI RPSYVLGGRA MEIVDSQAQL DDYIATAVQV 
SGDSPVLIDQ YLRDAIECDV DALADGDEVT VAGVMQHIEE AGIHSGDSAC TLPPYSLPAE 
IVAEMERQAV LLARGLDVRG LMNIQFAVKD GEVYLIEVNP RASRTVPFVA KAVGQPIAKF 
AARIMAGEKL TDLPPIKREI DYMAVKEAVF PFARFPGIDP VLSPEMKSTG EVMGIDGTFA 
VAFAKSQLGA GVRLPQGGTL FVSVKDSDKP VVLPAVRKLA ELGFRIVATG GTARYLSDEG 
VNVERVNKVA EGRPHIVDRI IDGEIALIFN TTEGWQSHKD SQSIRASALG AKVPYFTTAA 
ASVATVEAIE ALRTAELEVR SLQDYYG