Gene Psyc_0814 details

Gene Information

• Locus tag: Psyc_0814
• Symbol: carB
• ID: 3514662
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Psychrobacter arcticus 273-4
• Kingdom: Bacteria
• Replicon accession: NC_007204
• Strand: -
• Start bp: 976262
• End bp: 979516
• Gene Length: 3255 bp
• Protein Length: 1084 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637669501
• Product: carbamoyl-phosphate synthase large subunit
• Protein accession: YP_264101
• Protein GI: 71065374
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism
• COG ID: [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.253705
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 6
• Fosmid unclonability p-value: 0.0427985
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCAAAAC GTACCGACAT AAAAAGCATT CTTATCATTG GCGCAGGTCC TATCGTCATC 
GGGCAAGCGT GCGAGTTTGA TTATTCAGGC GCACAGGCGT GTAAAGCGTT AAAAGAAGAA 
GGCTACCGCG TCATCTTGGT CAATTCAAAT CCTGCCACTA TCATGACTGA CCCTGCTATG 
GCTGATGCGA CTTATATCGA GCCTATTACA TGGCAGACGG TTGAGCAAAT CATTGCTAAA 
GAGCGTCCTG ATGCTATCTT GCCAACGATG GGCGGACAAA CCGCTCTAAA CTGTGCGTTA 
GAATTAGATA AGCATGGCGT ATTGACCAAA TATAATTGCG AATTGATTGG GGCGACTAAA 
GATTCAATCG AGATGGCAGA AGACCGCAAC TTGTTCGATA AAGCGATGAA GCGTATCGGC 
CTTGAATGTC CACGCGCTGA AACTGCTGAG ACGATGGAAG AAGCCTTTGC AACCCAAGAA 
AAAATGGGCT ATCCCTGTAT CATTCGCCCC TCGTTTACTA TGGGCGGTTC AGGCGGCGGT 
ATCGCATACA ACCGCGACGA ATTTATCGAG ATTTGTGAGC GTGGTTTTGA CTTATCACCA 
AACCATCAGC TACTTATCGA TGAGTCATTG ATTGGTTGGA AAGAATATGA GATGGAAGTG 
GTTCGCGACA AAAACGACAA CTGCATCATC ATCTGCGCCA TCGAAAACTT TGATCCGATG 
GGTGTACATA CGGGCGACTC AATCACGGTT GCGCCAGCAC AAACGCTGAC CGACAAAGAA 
TATCAAATCA TGCGCAATGC TTCATTAGCA GTACTGCGTG AGATTGGCGT GGAAACAGGC 
GGCTCAAACG TGCAGTTCGG TATCAACCCA GATACCGGTC GTATGGTCGT CATCGAGATG 
AATCCACGCG TATCACGCTC ATCAGCATTA GCATCAAAAG CCACGGGCTT CCCGATTGCA 
AAAATCGCGG CAAAATTAGC GATTGGTTAT ACGCTAGATG AATTGCAAAA TGACATCACT 
GGTGGCAAAA CGCCAGCAAG CTTCGAACCT GCACTTGATT ATGTGGTTAC AAAGATACCT 
CGTTTTAACT TTGAAAAATT CCCACAAGCG GATAACGTGT TATCAACCCA GATGAAATCA 
GTTGGTGAAG TGATGGCTAT CGGCCGTAAC TTCCAAGAAT CCATGCAAAA AGCACTGCGT 
GGTATGGAAA CCGGCAATGA TGGTTTTGAT GAGCAAATCG ATTTATCAAA AGTCAGCATT 
GAAAAGGCAC GCAGCGAGAT TACCAATCGT CTGACCATTC CAACACCTGA ACGCATTTAT 
TATATTGCTG ATGCTTTCCG TATTGGCATG AGCGTCGATG ACGTTTTCAA ACTAACCAAA 
ATCGACCCAT GGTTCTTGGT ACAAATCGAA GATATCGTCA AAACCGAAGC ACAAGTTAAA 
GCGTTAGGTT TTGGTGGTTT AACCGAAAAG AACTTACGCA GCTTTAAGCG TAAAGGCTTA 
TCAGACTTAC GTTTGGCGAA GTTGCTTGGC GTCTCACAAA AGCAGCTACG TACCAAGCGT 
TGGGACCTAA ATATCTATCC AGTTTATAAG CGCGTCGATA CCTGCGCGGC AGAATTTGCT 
ACCAGTACTG CTTATATGTA CTCAACGTAT GATAGCGAAT GTGAAGCAAA TCCAACGAAT 
AACAAAAAAA TTATGGTTAT CGGTGGCGGT CCTAACCGTA TCGGTCAAGG TATCGAGTTT 
GACTATTGCT GTGTACACGC AGCCCTTGCG ATGCGCGAAG ACGGTTATGA GACCATCATG 
GTCAACTGTA ACCCTGAAAC CGTTTCAACC GATTATGACA CCTCTGATCG TCTCTACTTT 
GAGCCAATCA CCTTAGAAGA CGTGCTAGAG ATCGTTCGTA TCGAAAATCC TGATGGCGTG 
ATTGTACAGT TCGGTGGTCA AACGCCATTG AAGCTAGCCC GTGCGCTTGA AGCCGCTGGC 
GTCAAAATCA TTGGCACTAG CCCTGATGCG ATTGACCGTG CTGAAGATCG CGAACGCTTT 
CAACATATGA TTCAGCAATT GAACCTTGTT CAACCAACCA ATGCCTTAGC CACTAGCTTA 
GAAGATGGTT TGGTCAAAGC AAAAGACGTT GGCTATCCAT TAGTAGTACG TCCATCATAT 
GTACTCGGTG GTCGTGCGAT GGAGATTGTC TATAACGAAG ATGAACTAAG ACATTATCTG 
CGTACTGCGG TACAAGCGTC AAACGAAGCG CCGGTACTAT TAGACCGTTT CTTAGACGAC 
GCTATCGAAG TCGATGTCGA TTGTGTTAGC GACGGTACTG ACGTGGTGAT TGGCGGTATC 
ATGCAGCATA TCGAACAAGC TGGCGTACAC TCTGGTGACT CAGCCTGTTC ATTACCACCT 
TACTCGCTCT CAAAAGAGTT ATGTGATGTG ATGCGCGCAC AAACCGTCGC CATGGCTAAA 
GAGCTTGGTG TTGTGGGTTT GATGAACGTA CAGTTTGCGG TAAAAGGTGA AACGGTTTAC 
ATCCTTGAGG TCAATCCTCG TGCAGCGCGT ACGGTGCCGT TTGTCTCTAA ATGTATCGGT 
ACTTCTCTAG CGCAAATCGC AGCGCGTTGT ATGGCTGGCA CCTCGCTAAA AGACCAAGGC 
TTTACGAAAG AAATCGTTCC TGCATTTTTT GCAGTCAAAG AAGCGGTCTT CCCGTTTGCT 
AAGTTCCCTG GTGTTGATCC AATCTTGAGC CCTGAGATGA AATCAACTGG TGAAGTGATG 
GGCGTTGGCA AAACCTTTGG CGAAGCTTTC TATAAAGCCG TCATCGGTAG TAATGAGCGT 
CTGCCCGGTC TACCAACTGA AGGTGAAACC AAAACGGTCT TTATCTCTGT ACGTGATAGT 
GATAAAGAAC AAGTTGCCCC TATCGCTCGT CAGCTGATTG ACTTTGGCTT TAATATTGTG 
GCGACTACTG GTACGCAAAA GGTACTTAGC GACAATGGTA TTGAATGTAA ACAAATCAAC 
AAAGTCACCG AAGGTCGCCC GCATATCGTT GATGCCTTGA AAAATGGCAA CATTGATATG 
ATTATCAACA CGACCGAAGG CAAGCAGGCA CAAGAGGATT CATTCTCTAT CCGTCGTAGT 
GCACTACAAG GCAAAGTGTT CTACGTCACC ACTTTAGGTG CGGCAGATGC GGTCTGTAAA 
TCTTATGCCA TTGACCTACC TTTTGAGGTG TATAAATTGC AAGATTTGCA TGAGCAAGCA 
AAGTCTATTG TTTAG 

 

Protein sequence

MPKRTDIKSI LIIGAGPIVI GQACEFDYSG AQACKALKEE GYRVILVNSN PATIMTDPAM 
ADATYIEPIT WQTVEQIIAK ERPDAILPTM GGQTALNCAL ELDKHGVLTK YNCELIGATK 
DSIEMAEDRN LFDKAMKRIG LECPRAETAE TMEEAFATQE KMGYPCIIRP SFTMGGSGGG 
IAYNRDEFIE ICERGFDLSP NHQLLIDESL IGWKEYEMEV VRDKNDNCII ICAIENFDPM 
GVHTGDSITV APAQTLTDKE YQIMRNASLA VLREIGVETG GSNVQFGINP DTGRMVVIEM 
NPRVSRSSAL ASKATGFPIA KIAAKLAIGY TLDELQNDIT GGKTPASFEP ALDYVVTKIP 
RFNFEKFPQA DNVLSTQMKS VGEVMAIGRN FQESMQKALR GMETGNDGFD EQIDLSKVSI 
EKARSEITNR LTIPTPERIY YIADAFRIGM SVDDVFKLTK IDPWFLVQIE DIVKTEAQVK 
ALGFGGLTEK NLRSFKRKGL SDLRLAKLLG VSQKQLRTKR WDLNIYPVYK RVDTCAAEFA 
TSTAYMYSTY DSECEANPTN NKKIMVIGGG PNRIGQGIEF DYCCVHAALA MREDGYETIM 
VNCNPETVST DYDTSDRLYF EPITLEDVLE IVRIENPDGV IVQFGGQTPL KLARALEAAG 
VKIIGTSPDA IDRAEDRERF QHMIQQLNLV QPTNALATSL EDGLVKAKDV GYPLVVRPSY 
VLGGRAMEIV YNEDELRHYL RTAVQASNEA PVLLDRFLDD AIEVDVDCVS DGTDVVIGGI 
MQHIEQAGVH SGDSACSLPP YSLSKELCDV MRAQTVAMAK ELGVVGLMNV QFAVKGETVY 
ILEVNPRAAR TVPFVSKCIG TSLAQIAARC MAGTSLKDQG FTKEIVPAFF AVKEAVFPFA 
KFPGVDPILS PEMKSTGEVM GVGKTFGEAF YKAVIGSNER LPGLPTEGET KTVFISVRDS 
DKEQVAPIAR QLIDFGFNIV ATTGTQKVLS DNGIECKQIN KVTEGRPHIV DALKNGNIDM 
IINTTEGKQA QEDSFSIRRS ALQGKVFYVT TLGAADAVCK SYAIDLPFEV YKLQDLHEQA 
KSIV