| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gmet_1774 |
|---|
| Symbol | |
|---|
| ID | 3741450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter metallireducens GS-15 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007517 |
|---|
| Strand | + |
|---|
| Start bp | 1988706 |
|---|
| End bp | 1991951 |
|---|
| Gene Length | 3246 bp |
|---|
| Protein Length | 1081 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637779059 |
|---|
| Product | carbamoyl-phosphate synthase large subunit |
|---|
| Protein accession | YP_384730 |
|---|
| Protein GI | 78222983 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000157385 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.0854041 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAAC GTACCGACAT CAAAAAGATT CTCATCATCG GCGCCGGCCC CATCGTCATC
GGCCAGGCGT GCGAATTCGA CTACTCCGGC ACCCAGGCGT GCAAGGCGTT GAAGGAAGAA
GGGTTTGAGG TGGTGCTGCT GAACAGCAAC CCGGCCACCA TCATGACCGA CCCCGATTTT
GCCGACCGAA CCTATGTGGA ACCGGTTACT CCTGACGTAC TGGCCAAGAT CATCGAAAAG
GAGCGCCCCG ACGCGGTTCT CCCCACGCTC GGCGGCCAGA CTGCCCTGAA CACCGCTGTG
GCCGTGGCCG AGAACGGCAC CCTGGAGAAG TTCGGGGTTG AGTTGATCGG GGCCAAGCTT
CCGGCCATCA AGAAGGCCGA GGACCGGACC CTCTTCAAGG AGGCCATGGA GAAGATCGGC
CTTTCGGTTC CCCGCTCTGG CCTTGCCCAC AACTACACCG AGGCCATGGA GGTGATCAAG
ACGGTCGGCT TTCCGGCCAT TATCCGCCCC TCCTTCACCC TGGGGGGAAC CGGCGGCGGC
ATTGCCTACA ACATGGAAGA GTATGAAAAG ATGGCCATGG GGGGCATCGA CGCCTCCCCC
ACCGACGAGA TTCTCGTGGA AGAATCGGTC ATCGGCTGGA AGGAGTACGA GCTGGAGGTG
ATGCGCGACA CCGCCGACAA CGTGGTGATC ATCTGTTCCA TCGAGAACTT CGACCCCATG
GGGGTCCATA CCGGCGACTC CATCACCGTG GCCCCGGCCC AGACCCTCAC CGACAAGGAG
TATCAGATCC TTCGCGACGC GGCCCTCAAG ATCATCCGCG AGATCGGGGT CGACACCGGC
GGCTCCAATA TCCAGTTCGG CATCAACCCC CGGAACGGCC GCCTGGTAGT CATCGAGATG
AATCCGCGGG TTTCCCGTTC CTCGGCCCTG GCCTCCAAGG CCACCGGCTT TCCCATCGCC
AAGATTGCGG CAAAGCTGGC CGTGGGCTAC ACCCTGGACG AGATCAGAAA CGACATCACC
CGCGAGACCC CGGCATGCTT CGAGCCGACC ATCGACTACG TGGTGACCAA GATCCCGCGC
TTCACCTTCG AGAAATTCCC CGCCGCCGAC AGCACCCTCA CCACCCAGAT GAAGTCTGTG
GGTGAAGTCA TGGCCATCGG CCGTACCTTC AAGGAGTCGT TCCAGAAGGC CCTCCGTTCT
CTGGAGATCG GCTCCGCCGG GTTCGAATCG CGGCTTTTCA CCAACGGCGA CACCCGTCGG
GCCCTCAGCG CCAAGGAGCA GCAGCTTGTT CAGGACAAGC TCCGGGTACC CAACTGGGAG
CGGCTCTGGT ACCTGGGGGA TGCTTTCCGC TGTGGCATGA GCATCGACGA GATCTTCCAG
TTCACCGCCA TAGATCCTTG GTTCCTTCAC AATATCAAGC AGATCATCGA GAAAGAAGAG
GATCTGCGGA CGGTCGATTT GGCGGCGGAA ACCAGGGAAA ATCTGGCTGC CATCGTCCGC
GAGGCCAAGC AGTACGGCTT TTCCGACAAG ATGCTCGGTC GTTTCTGGGG GAAGAACGAC
GAGGAGATCC GTCAACTGCG CCTTTCTCTC GGCGTGAAGC CGGTGTTCAA GCGGGTTGAT
ACCTGCGCCG CCGAGTTCGT GGCCTATACC CCGTACCTCT ACTCCACCTA CGAGGAGGAG
TGCGAGGCCG AGGTGACCGA CCGGAAGAAG ATCATGATTC TCGGCGGCGG TCCCAACCGG
ATCGGACAGG GGATTGAGTT CGACTACTGC TGCGTCCACG GGGTTTTCGC CCTGGGAGAA
GACGGCTACG AGACCATCAT GGTCAACTGC AACCCGGAAA CGGTCTCCAC CGACTACGAC
ACCTCCGACC GCCTCTACTT CGAGCCCCTC ACCTACGAGG ACGTCCTTTC CATAGTCGAT
CTGGAAAAGC CCCAGGGGGT CATCGTCCAG TTCGGCGGCC AGACTCCGCT CAAGCTGTCT
GTTGCCCTGG AGAAGGCCGG GGTTCCCATT ATCGGCACCT CTCCCGACGC CATCGACCGG
GCCGAGGACC GGGAGCGGTT CCAAGAGATG CTCCACAAGC TGAACCTGCT GCAGCCCGAG
AACGGTACCG CCCGCTCCTT TGAGGAGGCG GAAGAGGTGG CCAACCGGAT CGGCTACCCC
GTGGTGGTGC GTCCCTCCTA TGTTCTTGGC GGCAGGGCCA TGGAGATCGT CTACGACGTG
GAGAATCTGC GCCGTTACAT GACCACCGCC GTCCAGGCGT CGCCGGAGCA TCCGATCCTC
ATCGACAAGT TCCTGGACAA GGCCATCGAG ATCGACGTAG ACGCCCTCTG TGACGGGACC
GAGGTGGTTA TCGGCGGAAT CATGGAGCAC ATCGAGGAGG CCGGCATCCA CTCGGGCGAC
TCAGCCTGCT GTCTGCCGCC CCATTCAATT TCGCCGGAAC TGGTGGAGGA GATCAGGCGC
CAGACCACCG TCATGGCACT GGAGCTGAAC GTCAAGGGGC TCATGAACGT TCAGTATGCC
ATTAAGGACG GGACCATCTA CATCCTTGAG GTGAACCCCC GGGCCTCCCG GACAGCACCT
TTCGTCTCCA AGGCCACGGG GCGCCCCTTG GCCAAGATCG CGGCCCGGAT CATGGCCGGC
AAGTCCCTGA AGGAGCTGGG CGTTGCCGGC GACATCGTGC CGAAGCACAT GTCGGTCAAG
GAAGCGGTTT TCCCCTTCGT GAAGTTCCCC GGTGTTGACA CGATCCTCGG ACCGGAGATG
AAGTCTACCG GTGAGGTCAT GGGGATCGGT TCCGATTTCG CCACCGCCTT CGCCAAGGCG
CAACTCGGCG CCAACGTGAA ACTGCCCCGA TCGGGGAAGG TTTTCATCAG CCTCCATGAC
GCCGACAAGA AACATATTGT CGACTCAGCG AAAAAGCTCT ATAATGCCGG TTTTAGATTG
GTTGCCACGC GGGGTACCGC CGCCTACCTT AAGGAGAAGG GTGTGGAGGT GGAGGTGATC
AACAAGGTGC TCGAAGGACG GCCTCACATC GTCGACGCCA TCAAGAGTGG GCAGGTCTGC
ATGGTGCTCA ACACCACCCA GGGTGCTCAG GCCGTGGCCG ATTCCTTCTC TATCCGGCGT
GAGTCTCTCA TGCACAACGT GGCTTATTTC ACCACCGTTG CCGGAGCAAA TGCGGCTGCA
GAAGGGATCA TCGCCATGAT CAACGGCGAA CTTGATGTGA AACCGTTGCA GGAATACCTG
GCCTGA
|
|---|
| Protein sequence | MPKRTDIKKI LIIGAGPIVI GQACEFDYSG TQACKALKEE GFEVVLLNSN PATIMTDPDF
ADRTYVEPVT PDVLAKIIEK ERPDAVLPTL GGQTALNTAV AVAENGTLEK FGVELIGAKL
PAIKKAEDRT LFKEAMEKIG LSVPRSGLAH NYTEAMEVIK TVGFPAIIRP SFTLGGTGGG
IAYNMEEYEK MAMGGIDASP TDEILVEESV IGWKEYELEV MRDTADNVVI ICSIENFDPM
GVHTGDSITV APAQTLTDKE YQILRDAALK IIREIGVDTG GSNIQFGINP RNGRLVVIEM
NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDEIRNDIT RETPACFEPT IDYVVTKIPR
FTFEKFPAAD STLTTQMKSV GEVMAIGRTF KESFQKALRS LEIGSAGFES RLFTNGDTRR
ALSAKEQQLV QDKLRVPNWE RLWYLGDAFR CGMSIDEIFQ FTAIDPWFLH NIKQIIEKEE
DLRTVDLAAE TRENLAAIVR EAKQYGFSDK MLGRFWGKND EEIRQLRLSL GVKPVFKRVD
TCAAEFVAYT PYLYSTYEEE CEAEVTDRKK IMILGGGPNR IGQGIEFDYC CVHGVFALGE
DGYETIMVNC NPETVSTDYD TSDRLYFEPL TYEDVLSIVD LEKPQGVIVQ FGGQTPLKLS
VALEKAGVPI IGTSPDAIDR AEDRERFQEM LHKLNLLQPE NGTARSFEEA EEVANRIGYP
VVVRPSYVLG GRAMEIVYDV ENLRRYMTTA VQASPEHPIL IDKFLDKAIE IDVDALCDGT
EVVIGGIMEH IEEAGIHSGD SACCLPPHSI SPELVEEIRR QTTVMALELN VKGLMNVQYA
IKDGTIYILE VNPRASRTAP FVSKATGRPL AKIAARIMAG KSLKELGVAG DIVPKHMSVK
EAVFPFVKFP GVDTILGPEM KSTGEVMGIG SDFATAFAKA QLGANVKLPR SGKVFISLHD
ADKKHIVDSA KKLYNAGFRL VATRGTAAYL KEKGVEVEVI NKVLEGRPHI VDAIKSGQVC
MVLNTTQGAQ AVADSFSIRR ESLMHNVAYF TTVAGANAAA EGIIAMINGE LDVKPLQEYL
A
|
|---|
| |