More than 300 homologs were found in PanDaTox collection
for query gene Vapar_3535 on replicon NC_012791
Organism: Variovorax paradoxus S110



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012791  Vapar_3535  binding-protein-dependent transport systems inner membrane component  100 
 
 
305 aa  610  9.999999999999999e-175  Variovorax paradoxus S110  Bacteria  normal  0.273694  n/a   
 
 
-
 
NC_008781  Pnap_3270  binding-protein-dependent transport systems inner membrane component  82.41 
 
 
304 aa  485  1e-136  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1009  binding-protein-dependent transport systems inner membrane component  82.86 
 
 
278 aa  473  1e-132  Polaromonas sp. JS666  Bacteria  normal  0.507901  hitchhiker  0.00360584 
 
 
-
 
NC_008786  Veis_2471  binding-protein-dependent transport systems inner membrane component  82.76 
 
 
303 aa  453  1.0000000000000001e-126  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5258  binding-protein-dependent transport systems inner membrane component  71.85 
 
 
304 aa  451  1.0000000000000001e-126  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.837407 
 
 
-
 
NC_010625  Bphy_5901  binding-protein-dependent transport systems inner membrane component  71.38 
 
 
304 aa  442  1e-123  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1360  ABC spermidine/putrescine transporter, inner membrane subunit  71.52 
 
 
304 aa  431  1e-120  Burkholderia xenovorans LB400  Bacteria  normal  0.80723  normal  0.0410595 
 
 
-
 
NC_008825  Mpe_A3373  ABC transporter permease protein  73.44 
 
 
325 aa  425  1e-118  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.713677 
 
 
-
 
NC_010524  Lcho_0207  binding-protein-dependent transport systems inner membrane component  70.03 
 
 
298 aa  425  1e-118  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0627412 
 
 
-
 
NC_011894  Mnod_0102  binding-protein-dependent transport systems inner membrane component  70.63 
 
 
317 aa  414  1e-114  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0368205  n/a   
 
 
-
 
NC_010511  M446_4740  binding-protein-dependent transport systems inner membrane component  69.61 
 
 
318 aa  408  1e-113  Methylobacterium sp. 4-46  Bacteria  normal  0.284735  normal 
 
 
-
 
NC_010505  Mrad2831_3944  binding-protein-dependent transport systems inner membrane component  67.02 
 
 
311 aa  374  1e-102  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2892  ABC transporter permease  70 
 
 
276 aa  348  9e-95  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0679863 
 
 
-
 
NC_009050  Rsph17029_4062  binding-protein-dependent transport systems inner membrane component  58.68 
 
 
287 aa  345  7e-94  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.369839  normal  0.616625 
 
 
-
 
NC_007494  RSP_3336  ABC spermidine/putrescine transporter, inner membrane subunit  58.68 
 
 
287 aa  345  7e-94  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009429  Rsph17025_3635  hypothetical protein  56.25 
 
 
287 aa  323  2e-87  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.493501  normal 
 
 
-
 
NC_011369  Rleg2_2657  binding-protein-dependent transport systems inner membrane component  56.54 
 
 
301 aa  298  8e-80  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.364659  normal 
 
 
-
 
NC_012850  Rleg_2918  binding-protein-dependent transport systems inner membrane component  57.24 
 
 
304 aa  298  8e-80  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.241078  normal 
 
 
-
 
NC_011988  Avi_6277  ABC transporter membrane spanning protein (spermidine/putrescine)  54.9 
 
 
301 aa  293  2e-78  Agrobacterium vitis S4  Bacteria  normal  0.187889  n/a   
 
 
-
 
NC_009485  BBta_1906  ABC transporter permease  48.43 
 
 
293 aa  262  6e-69  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.343914  normal 
 
 
-
 
NC_011981  Avi_7130  ABC transporter membrane spanning protein (spermidine/putrescine)  48.41 
 
 
289 aa  260  2e-68  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5874  ABC transporter membrane spanning protein (spermidine/putrescine)  33.66 
 
 
299 aa  191  1e-47  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0994  binding-protein-dependent transport systems inner membrane component  37.17 
 
 
307 aa  181  2e-44  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_3521  binding-protein-dependent transport systems inner membrane component  34.74 
 
 
296 aa  150  3e-35  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.248217 
 
 
-
 
NC_013422  Hneap_2375  binding-protein-dependent transport systems inner membrane component  32.42 
 
 
304 aa  145  9e-34  Halothiobacillus neapolitanus c2  Bacteria  normal  0.113051  n/a   
 
 
-
 
NC_009952  Dshi_1599  spermidine/putrescine transport system permease protein  34.41 
 
 
293 aa  144  2e-33  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.120621  normal 
 
 
-
 
NC_007948  Bpro_2097  binding-protein-dependent transport systems inner membrane component  34.35 
 
 
313 aa  144  2e-33  Polaromonas sp. JS666  Bacteria  normal  0.036296  normal  0.0908673 
 
 
-
 
NC_007493  RSP_0017  ABC spermidine/putrescine transporter, inner membrane subunit  34.26 
 
 
295 aa  144  3e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1646  binding-protein-dependent transport systems inner membrane component  34.26 
 
 
295 aa  144  3e-33  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.257053  normal  0.557332 
 
 
-
 
NC_003910  CPS_4673  putrescine ABC transporter, permease protein  31.71 
 
 
317 aa  141  9.999999999999999e-33  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2172  binding-protein-dependent transport systems inner membrane component  36.59 
 
 
295 aa  141  9.999999999999999e-33  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0510016  normal 
 
 
-
 
NC_009092  Shew_0975  binding-protein-dependent transport systems inner membrane component  33.46 
 
 
301 aa  140  1.9999999999999998e-32  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_1133  binding-protein-dependent transport systems inner membrane component  32.97 
 
 
301 aa  139  7e-32  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0822  binding-protein-dependent transport systems inner membrane component  38.46 
 
 
307 aa  139  7e-32  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3007  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
299 aa  138  1e-31  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.360446  n/a   
 
 
-
 
NC_008687  Pden_4068  binding-protein-dependent transport systems inner membrane component  38.81 
 
 
289 aa  138  1e-31  Paracoccus denitrificans PD1222  Bacteria  normal  0.270331  normal  0.616396 
 
 
-
 
NC_007802  Jann_3074  binding-protein-dependent transport systems inner membrane component  31.54 
 
 
287 aa  137  2e-31  Jannaschia sp. CCS1  Bacteria  normal  0.716489  normal  0.098121 
 
 
-
 
NC_009439  Pmen_0348  binding-protein-dependent transport systems inner membrane component  37.22 
 
 
302 aa  137  2e-31  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2916  binding-protein-dependent transport systems inner membrane component  31.49 
 
 
301 aa  135  6.0000000000000005e-31  Shewanella sp. MR-4  Bacteria  hitchhiker  0.0057841  normal  0.437411 
 
 
-
 
NC_008322  Shewmr7_2998  binding-protein-dependent transport systems inner membrane component  31.49 
 
 
301 aa  135  6.0000000000000005e-31  Shewanella sp. MR-7  Bacteria  normal  0.0768287  normal 
 
 
-
 
NC_009901  Spea_0948  binding-protein-dependent transport systems inner membrane component  33.09 
 
 
301 aa  135  7.000000000000001e-31  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0285  binding-protein-dependent transport systems inner membrane component  35.81 
 
 
306 aa  134  9.999999999999999e-31  Pseudomonas putida W619  Bacteria  normal  normal  0.678954 
 
 
-
 
NC_008577  Shewana3_3095  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
301 aa  134  9.999999999999999e-31  Shewanella sp. ANA-3  Bacteria  normal  0.0587247  normal 
 
 
-
 
NC_002947  PP_5178  binding-protein-dependent transport systems inner membrane component  36.28 
 
 
306 aa  134  1.9999999999999998e-30  Pseudomonas putida KT2440  Bacteria  normal  0.542321  normal 
 
 
-
 
NC_010322  PputGB1_5238  binding-protein-dependent transport systems inner membrane component  36.28 
 
 
306 aa  134  1.9999999999999998e-30  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_5402  binding-protein dependent transport system inner membrane protein  33.06 
 
 
306 aa  134  1.9999999999999998e-30  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.434189  decreased coverage  0.000259931 
 
 
-
 
NC_009512  Pput_5085  binding-protein-dependent transport systems inner membrane component  36.28 
 
 
306 aa  134  1.9999999999999998e-30  Pseudomonas putida F1  Bacteria  normal  0.358799  normal  0.347676 
 
 
-
 
NC_009438  Sputcn32_1096  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
301 aa  133  3e-30  Shewanella putrefaciens CN-32  Bacteria  normal  0.0511337  n/a   
 
 
-
 
NC_004347  SO_1272  polyamine ABC transporter, permease protein  32.18 
 
 
301 aa  132  5e-30  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007802  Jann_2402  binding-protein-dependent transport systems inner membrane component  34.38 
 
 
362 aa  132  6.999999999999999e-30  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_2982  binding-protein-dependent transport systems inner membrane component  34.52 
 
 
293 aa  132  6.999999999999999e-30  Ruegeria sp. TM1040  Bacteria  normal  0.12997  normal  0.783486 
 
 
-
 
NC_010676  Bphyt_6152  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
301 aa  132  7.999999999999999e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0394  polyamine transport protein PotH  34.17 
 
 
303 aa  132  7.999999999999999e-30  Pseudomonas aeruginosa PA7  Bacteria  normal  0.72562  n/a   
 
 
-
 
NC_008781  Pnap_2860  binding-protein-dependent transport systems inner membrane component  34.05 
 
 
305 aa  132  7.999999999999999e-30  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.055919  normal  0.0738554 
 
 
-
 
NC_008463  PA14_03950  polyamine transport protein PotH  34.17 
 
 
293 aa  132  9e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_011663  Sbal223_3190  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
301 aa  131  1.0000000000000001e-29  Shewanella baltica OS223  Bacteria  normal  0.90235  normal  0.0128197 
 
 
-
 
NC_009052  Sbal_1110  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
301 aa  131  1.0000000000000001e-29  Shewanella baltica OS155  Bacteria  hitchhiker  0.000446726  n/a   
 
 
-
 
NC_009997  Sbal195_1201  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
301 aa  131  1.0000000000000001e-29  Shewanella baltica OS195  Bacteria  normal  0.0492814  normal 
 
 
-
 
NC_009665  Shew185_1168  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
301 aa  131  1.0000000000000001e-29  Shewanella baltica OS185  Bacteria  normal  0.0126623  n/a   
 
 
-
 
NC_010625  Bphy_6579  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
302 aa  130  2.0000000000000002e-29  Burkholderia phymatum STM815  Bacteria  normal  0.21378  normal  0.43558 
 
 
-
 
NC_007954  Sden_3029  binding-protein-dependent transport systems inner membrane component  34.08 
 
 
285 aa  130  2.0000000000000002e-29  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00751229  n/a   
 
 
-
 
NC_011901  Tgr7_1262  ABC-type spermidine/putrescine transport system  38.5 
 
 
322 aa  130  2.0000000000000002e-29  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5302  putrescine ABC transporter, permease protein  32.66 
 
 
317 aa  130  3e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7681  ABC spermidine/putrescine transporter, inner membrane subunit  31.09 
 
 
297 aa  129  9.000000000000001e-29  Burkholderia sp. 383  Bacteria  normal  0.962209  normal  0.12531 
 
 
-
 
NC_007005  Psyr_4862  binding-protein dependent transport system inner membrane protein  35 
 
 
306 aa  128  1.0000000000000001e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2137  binding-protein-dependent transport systems inner membrane component  37.02 
 
 
267 aa  128  1.0000000000000001e-28  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3605  binding-protein-dependent transport systems inner membrane component  32.97 
 
 
295 aa  128  2.0000000000000002e-28  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0391464 
 
 
-
 
NC_007908  Rfer_0354  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
305 aa  127  3e-28  Rhodoferax ferrireducens T118  Bacteria  normal  0.0181159  n/a   
 
 
-
 
NC_007952  Bxe_B1508  ABC spermidine/putrescine transporter, inner membrane subunit  31.58 
 
 
301 aa  127  3e-28  Burkholderia xenovorans LB400  Bacteria  normal  0.0734046  normal  0.0460711 
 
 
-
 
NC_008700  Sama_2640  binding-protein-dependent transport systems inner membrane component  33.48 
 
 
303 aa  126  6e-28  Shewanella amazonensis SB2B  Bacteria  normal  0.0381119  normal 
 
 
-
 
NC_011772  BCG9842_B4006  spermidine/putrescine ABC transporter, permease protein  31.02 
 
 
282 aa  125  7e-28  Bacillus cereus G9842  Bacteria  normal  0.369906  hitchhiker  0.00000000961653 
 
 
-
 
NC_011725  BCB4264_A1338  spermidine/putrescine ABC transporter, permease protein  31.02 
 
 
282 aa  125  7e-28  Bacillus cereus B4264  Bacteria  normal  0.727492  n/a   
 
 
-
 
NC_007492  Pfl01_2119  binding-protein dependent transport system inner membrane protein  35.1 
 
 
304 aa  125  9e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.0489568  normal  0.20027 
 
 
-
 
NC_004310  BR1610  spermidine/putrescine ABC transporter, permease protein  33.86 
 
 
303 aa  125  1e-27  Brucella suis 1330  Bacteria  normal  0.0588164  n/a   
 
 
-
 
NC_010551  BamMC406_1670  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
309 aa  124  1e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0925484  normal 
 
 
-
 
NC_008390  Bamb_1673  binding-protein-dependent transport systems inner membrane component  33.61 
 
 
309 aa  124  1e-27  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2307  binding-protein-dependent transport systems inner membrane component  31.48 
 
 
309 aa  124  2e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.622  normal  0.150857 
 
 
-
 
NC_008009  Acid345_1542  ABC spermidine/putrescine transporter, inner membrane subunit  30.08 
 
 
281 aa  124  2e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.412621 
 
 
-
 
NC_007643  Rru_A1016  binding-protein dependent transport system inner membrane protein  32.31 
 
 
330 aa  123  3e-27  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.725697  n/a   
 
 
-
 
NC_008392  Bamb_6067  binding-protein-dependent transport systems inner membrane component  29.43 
 
 
323 aa  123  3e-27  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS1200  spermidine/putrescine ABC transporter permease  30.66 
 
 
282 aa  123  4e-27  Bacillus anthracis str. Sterne  Bacteria  normal  0.163674  n/a   
 
 
-
 
NC_010551  BamMC406_2907  binding-protein-dependent transport systems inner membrane component  30 
 
 
331 aa  123  4e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_1298  spermidine/putrescine ABC transporter permease  30.66 
 
 
282 aa  123  4e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1734  binding-protein-dependent transport systems inner membrane component  33.59 
 
 
315 aa  123  4e-27  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.0000338727 
 
 
-
 
NC_010084  Bmul_2992  binding-protein-dependent transport systems inner membrane component  32.03 
 
 
328 aa  122  5e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_1511  binding-protein-dependent transport systems inner membrane component  32.4 
 
 
309 aa  122  6e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.35956 
 
 
-
 
NC_007510  Bcep18194_A5048  ABC spermidine/putrescine transporter, inner membrane subunit  33.2 
 
 
308 aa  122  6e-27  Burkholderia sp. 383  Bacteria  normal  0.145296  normal 
 
 
-
 
NC_008148  Rxyl_2914  binding-protein-dependent transport systems inner membrane component  38.46 
 
 
278 aa  122  6e-27  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2475  putrescine transporter subunit: membrane component of ABC superfamily  34.08 
 
 
317 aa  122  7e-27  Shigella boydii CDC 3083-94  Bacteria  normal  0.41505  n/a   
 
 
-
 
NC_008062  Bcen_6330  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
308 aa  122  7e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.508263  n/a   
 
 
-
 
NC_008254  Meso_0165  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
303 aa  122  7e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1765  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
308 aa  122  7e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.806732 
 
 
-
 
NC_008542  Bcen2424_1749  binding-protein-dependent transport systems inner membrane component  33.2 
 
 
308 aa  122  7e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_1380  binding-protein-dependent transport systems inner membrane component  34.62 
 
 
296 aa  122  9.999999999999999e-27  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0764825  normal  0.0907135 
 
 
-
 
NC_009436  Ent638_1370  putrescine transporter subunit: membrane component of ABC superfamily  33.19 
 
 
317 aa  121  9.999999999999999e-27  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_1277  binding-protein-dependent transport systems inner membrane component  29.67 
 
 
309 aa  121  9.999999999999999e-27  Burkholderia phymatum STM815  Bacteria  normal  0.197627  normal  0.200022 
 
 
-
 
NC_012917  PC1_1694  putrescine transporter subunit: membrane component of ABC superfamily  32.35 
 
 
321 aa  121  9.999999999999999e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_1365  putative putrescine transport system permease protein  32.78 
 
 
302 aa  121  9.999999999999999e-27  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1952  ABC polyamine transporter, inner membrane subunit  29.07 
 
 
309 aa  122  9.999999999999999e-27  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.00258406  normal  0.610972 
 
 
-
 
NC_009720  Xaut_2942  binding-protein-dependent transport systems inner membrane component  36.07 
 
 
305 aa  121  1.9999999999999998e-26  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
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