| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_1542 |
|---|
| Symbol | |
|---|
| ID | 4072933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 1885011 |
|---|
| End bp | 1885856 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637983551 |
|---|
| Product | ABC spermidine/putrescine transporter, inner membrane subunit |
|---|
| Protein accession | YP_590618 |
|---|
| Protein GI | 94968570 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.412621 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTCTCCC GCGCCTACAA AGCTGCGGTG GCATTGCCCC CGATCTTTTG GGTCGCGGCG
TTCCTGCTCA CGCCCTATTT GCTCTTGTTC TGCAATAGCT TTTGGAGCGT GCAGGACGGT
CAAGTGATCG TCCATAACTG GGGCCTGCAG AATTACAAAC AACTCGCCAG TGTTCCCGTT
TACGTGCAGG TATTGCTGCG CTCTATGAAG ATCGCGGGCG GCGTTACGCT GCTCGCGCTG
CTGCTCGGTT ATCCGCTTGC GTATTACGTT GCGTTCTACG CCAAGCACAA GCAGTTGCTC
TACCAGCTCG TCATCATTCC GCTGTGGGTG AGCTACCTCG TCCGCGCCTA TGCGTGGAAG
ACGATCCTTG GCAGCGATGG AGTCCTCAAC ACGCTGCTGC AATACCTGCA TATCACCCAC
GAGCCCGTCG GCGCGCTGCT CTACAGTCCG TTCGCCGTCG TACTTACATT GACGCATATC
TATACGCCGT TCACGTTCCT GCCGATTTAT GCGGCGCTCG AACATATCCC AAAGAATCTC
GTGGAAGCCT CGCAAGACCT CGGCGCCTCG CGCGTAAAGA CCTTCTGGCG TGTGATCGTC
CCGCTTTCCA TCCCCGGTGT CCTGGCCGGC GCGACGTTCG CCTTCGTGCT GAGCCTCGGC
GACTTCCTCG CACCGCTGCT GCTCGGTGGG CCGAGCGGCA TAATGATCTC CAACGTAGTG
GTTACGCTCT TCGGCGCTGC CTATGATTGG CCGCTCGGCG CCGCGATATC CGTCTGCATG
ATGCTCATCG TTCTTGCCCT TCTTTTCCTC ACCGAGCGCC TCGAAAAGAA ATGGAGCTTC
TCCTGA
|
|---|
| Protein sequence | MFSRAYKAAV ALPPIFWVAA FLLTPYLLLF CNSFWSVQDG QVIVHNWGLQ NYKQLASVPV
YVQVLLRSMK IAGGVTLLAL LLGYPLAYYV AFYAKHKQLL YQLVIIPLWV SYLVRAYAWK
TILGSDGVLN TLLQYLHITH EPVGALLYSP FAVVLTLTHI YTPFTFLPIY AALEHIPKNL
VEASQDLGAS RVKTFWRVIV PLSIPGVLAG ATFAFVLSLG DFLAPLLLGG PSGIMISNVV
VTLFGAAYDW PLGAAISVCM MLIVLALLFL TERLEKKWSF S
|
|---|
| |