| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3535 |
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| Symbol | |
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| ID | 7972161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 3731174 |
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| End bp | 3732091 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644794120 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002945418 |
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| Protein GI | 239816508 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.273694 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCGCCC CCACCGCCAG CGCGCATGCG CCCAGCCCGT CCGTCCACGC CGTCAAGGCA
TGGTGGCAGG CGGCGCCGTT CGCGCTGGTG TTCCTGCTGT TCTTCCTGGT TCCGCTGGCG
CTGGTCGCGA TGGTCAGCCT GTGGAACTTC AACGAGTACG AGCTGATCCC CGCGGTCACG
CTGCGCAACT ACCTGAGCCT GTTCGAGGGC TGTTCGCATC TCACCGACAA CGGCGACCTG
TGCGTCACGC TCAACACCTA CCTGAGCACC TTCAAGTTCT GCCTGCTGGT GTGGGGCATC
ACGCTGGTGG TCGGCTTTTC GGTGGCCTAC TTCCTTGCAT TCCACGTCCG CTCGCCGGGC
ATGCAGACGG CGCTGTTCGT GCTGTGCACG GTGCCGTTCT GGACTTCCAA CGTGATCCGC
ATGATCTCGT GGGTGCCGCT GCTGGGCCGC AACGGGCTGG TGAACCAGGC ACTGATGGGC
CCGGGCGTGG TCAATCAGCC GGTCGAGTGG CTGCTGTTCT CCAATTTCTC GGTGGTGCTC
GCCTTCGTGC ACCTCTACAC GATGTTCATG ATCGTGCCGA TCTTCAACAG CATGATGCGC
ATCGACCGCT CGCTGCTCGA AGCCGCGAGC GATGCGGGCG CCTCGGGCTG GCAGACGCTC
TGGAACGTGG TGGTGCCGCT GTCGCGCACC GGCATCCTGA TCGGCTCGAT CTTCGTCATC
ACGATAGTGA TGGGCGACTT CGTCACCATC GGCGTGATGG GCGGGCAGCA GATCGCATCG
ATCGGCAAGA TCATCCAGGT ACAGACCTCG TACCTGCAGT TTCCGCTGGC CGCGGCCAAC
GCGGTGATCC TGCTGGCGGT GGTGCTGATG ATCATCTGGG GGCTCACGCG GCTGGTTGAT
ATTCGCAAGG AGCTTTAG
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| Protein sequence | MSAPTASAHA PSPSVHAVKA WWQAAPFALV FLLFFLVPLA LVAMVSLWNF NEYELIPAVT
LRNYLSLFEG CSHLTDNGDL CVTLNTYLST FKFCLLVWGI TLVVGFSVAY FLAFHVRSPG
MQTALFVLCT VPFWTSNVIR MISWVPLLGR NGLVNQALMG PGVVNQPVEW LLFSNFSVVL
AFVHLYTMFM IVPIFNSMMR IDRSLLEAAS DAGASGWQTL WNVVVPLSRT GILIGSIFVI
TIVMGDFVTI GVMGGQQIAS IGKIIQVQTS YLQFPLAAAN AVILLAVVLM IIWGLTRLVD
IRKEL
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