Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2640 |
Symbol | |
ID | 4604887 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3162993 |
End bp | 3163904 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639782051 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_928512 |
Protein GI | 119775772 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0381119 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAAC GAAAGAAAGG TTTTCGCTTT GCCATCCGTG GCAGGCACTT TACCCTGGGC TTTCCCTTCC TGTGGCTGAC CCTGTTCTTT GCACTGCCCT TTGCGATTGT GCTCAAGATC AGTTTCTCCA CCGCGGCGAT TGCCATTCCG CCCTATGAGC CCACCTTCAC CTATGCGGAT CAGCTGCTGA ATGTGGCGCT GAATCTCGGC AACTACCTGT TGCTGCTGGA CGATGCGCTC TATTACACCG CATATCTGGG CTCGCTCAAG ATAGCTGTGG TGTCCACTCT CGGCTGTTTG TTGCTCGGTT ATCCTATGGC TTACGCCATT GCCCGGGCTC CGGTGAAGAT GCAGACGGTT CTGCTGCTTC TCATTATGCT GCCGTCCTGG ACCTCGTTCC TTATCCGTGT GTACGCCTGG ATGGGGCTGC TCGCCGACAC CGGCCTTATC AACAATGTGC TGTTGTGGCT GGGTGCTATC GATGAGCCGC TGAAGATATT GAACACCAAT ATCGCCGTTT ATATCGGTAT TGTGTACGCC TATCTGCCCT TTATGGTGCT GCCGCTCTAC GCCAACCTGG TGAAGATGGA CATGAGCCTG CTGGAGGCCG CGGCCGACCT GGGTTCACGC AGTATCAATA CCTTCTGGAA TATCACTTTG CCGCTGTCAA AGGGTGGCGT GATTGCTGGC TCCATGCTGG TATTTATTCC GTCTGTGGGT GAGTTCGTTA TTCCCGAACT GCTGGGCGGC CCGGACTCGC TGATGATAGG TAAGGTCTTG TGGCAGGAGT TCTTCAACAA CCGTGACTGG CCGGTCGCCT CGGCGCTGGC GATAGTGATG CTGGGACTTT TGATTATCCC CATTACCCTG TTCCATCATT ATCAGGCCCG TGATTTGGAG AAAGAGGCAT GA
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Protein sequence | MSKRKKGFRF AIRGRHFTLG FPFLWLTLFF ALPFAIVLKI SFSTAAIAIP PYEPTFTYAD QLLNVALNLG NYLLLLDDAL YYTAYLGSLK IAVVSTLGCL LLGYPMAYAI ARAPVKMQTV LLLLIMLPSW TSFLIRVYAW MGLLADTGLI NNVLLWLGAI DEPLKILNTN IAVYIGIVYA YLPFMVLPLY ANLVKMDMSL LEAAADLGSR SINTFWNITL PLSKGGVIAG SMLVFIPSVG EFVIPELLGG PDSLMIGKVL WQEFFNNRDW PVASALAIVM LGLLIIPITL FHHYQARDLE KEA
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