Gene Sama_2640 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_2640 
Symbol 
ID4604887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp3162993 
End bp3163904 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content54% 
IMG OID639782051 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_928512 
Protein GI119775772 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1176] ABC-type spermidine/putrescine transport system, permease component I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0381119 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAAC GAAAGAAAGG TTTTCGCTTT GCCATCCGTG GCAGGCACTT TACCCTGGGC 
TTTCCCTTCC TGTGGCTGAC CCTGTTCTTT GCACTGCCCT TTGCGATTGT GCTCAAGATC
AGTTTCTCCA CCGCGGCGAT TGCCATTCCG CCCTATGAGC CCACCTTCAC CTATGCGGAT
CAGCTGCTGA ATGTGGCGCT GAATCTCGGC AACTACCTGT TGCTGCTGGA CGATGCGCTC
TATTACACCG CATATCTGGG CTCGCTCAAG ATAGCTGTGG TGTCCACTCT CGGCTGTTTG
TTGCTCGGTT ATCCTATGGC TTACGCCATT GCCCGGGCTC CGGTGAAGAT GCAGACGGTT
CTGCTGCTTC TCATTATGCT GCCGTCCTGG ACCTCGTTCC TTATCCGTGT GTACGCCTGG
ATGGGGCTGC TCGCCGACAC CGGCCTTATC AACAATGTGC TGTTGTGGCT GGGTGCTATC
GATGAGCCGC TGAAGATATT GAACACCAAT ATCGCCGTTT ATATCGGTAT TGTGTACGCC
TATCTGCCCT TTATGGTGCT GCCGCTCTAC GCCAACCTGG TGAAGATGGA CATGAGCCTG
CTGGAGGCCG CGGCCGACCT GGGTTCACGC AGTATCAATA CCTTCTGGAA TATCACTTTG
CCGCTGTCAA AGGGTGGCGT GATTGCTGGC TCCATGCTGG TATTTATTCC GTCTGTGGGT
GAGTTCGTTA TTCCCGAACT GCTGGGCGGC CCGGACTCGC TGATGATAGG TAAGGTCTTG
TGGCAGGAGT TCTTCAACAA CCGTGACTGG CCGGTCGCCT CGGCGCTGGC GATAGTGATG
CTGGGACTTT TGATTATCCC CATTACCCTG TTCCATCATT ATCAGGCCCG TGATTTGGAG
AAAGAGGCAT GA
 
Protein sequence
MSKRKKGFRF AIRGRHFTLG FPFLWLTLFF ALPFAIVLKI SFSTAAIAIP PYEPTFTYAD 
QLLNVALNLG NYLLLLDDAL YYTAYLGSLK IAVVSTLGCL LLGYPMAYAI ARAPVKMQTV
LLLLIMLPSW TSFLIRVYAW MGLLADTGLI NNVLLWLGAI DEPLKILNTN IAVYIGIVYA
YLPFMVLPLY ANLVKMDMSL LEAAADLGSR SINTFWNITL PLSKGGVIAG SMLVFIPSVG
EFVIPELLGG PDSLMIGKVL WQEFFNNRDW PVASALAIVM LGLLIIPITL FHHYQARDLE
KEA