| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_3029 |
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| Symbol | |
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| ID | 4019554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 3638079 |
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| End bp | 3638936 |
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| Gene Length | 858 bp |
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| Protein Length | 285 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637957080 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_564030 |
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| Protein GI | 91794379 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00751229 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTATTC CATACCTGTG GTTATTGCTG TTCTTTGCTT TGCCCTTTGC CATAGTATTA
AAGATAAGCT TCTCTTCGGC GGCGATTGCC ATCCCGCCCT ATGAACCGAC CTTTAATTAT
GTGGATGAGG CGCTGAACAT CTTCCTTAAC CTAGGTAACT ACCTGTTATT GCTTGATGAT
CAACTCTACT ACATGGCGTA CCTAAGCTCG ATTAAGACGG CGTTTGTGGC GACCTTAGGC
TGTTTGCTCT TGGGCTACCC CATGGCCTAT GCCATCGCTA AAGCGCCAGC TAGACTGCAA
ACTGTGCTGT TGCTGCTTAT TTTGCTGCCC TCTTGGACGT CGTTTCTTAT TCGAGTCTAT
GCCTGGATGG GGCTATTGAG TAACAACGGC CTGATTAATA ACTTCCTGCT GTGGACTGGG
GTTATTAGTG ATCCCATCCA AATGTTGAAT ACCAATTTCG CCGTCTATAT CGGCATAGTG
TACGCCTACC TGCCGTTTAT GATTTTGCCC TTGTATGCCA CCTTAGTAAA ACTGGATATG
AGCTTAATCG AGGCTGCATC GGATCTGGGT TCACGCAGCA TCAATACCTT CTGGCGGGTG
ACCTTGCCCC TATCAAAGAG TGGCGTTATT GCTGGCTCCA TGTTGGTGTT TATTCCTGCC
GTAGGCGAGT TTGTTATCCC TGAGCTGCTG GGCGGCCCAG ATTCTTTGAT GATAGGTAAA
ATTCTCTGGC AAGAGTTTTT CAATAACCGC GATTGGCCTG TGGCATCGGC ACTGGCAATT
GTGATGTTGG CTTTGCTTAT TATCCCCATT ACCTTGTTCC ACCGCTATCA GGCAAGAGAG
TTGGAGAAAG ACCTATGA
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| Protein sequence | MGIPYLWLLL FFALPFAIVL KISFSSAAIA IPPYEPTFNY VDEALNIFLN LGNYLLLLDD
QLYYMAYLSS IKTAFVATLG CLLLGYPMAY AIAKAPARLQ TVLLLLILLP SWTSFLIRVY
AWMGLLSNNG LINNFLLWTG VISDPIQMLN TNFAVYIGIV YAYLPFMILP LYATLVKLDM
SLIEAASDLG SRSINTFWRV TLPLSKSGVI AGSMLVFIPA VGEFVIPELL GGPDSLMIGK
ILWQEFFNNR DWPVASALAI VMLALLIIPI TLFHRYQARE LEKDL
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