| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0348 |
|---|
| Symbol | |
|---|
| ID | 5110317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 356790 |
|---|
| End bp | 357698 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640501564 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001185853 |
|---|
| Protein GI | 146305388 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGA GCAAACTGGC GCGCTATCTG CCCAGCGGGC GGCATGCCGT TATCGGCATA
CCCTTCCTCT GGCTGTTCCT GTTCTTCCTG CTGCCCTTCG TCATCGTGCT GAAGATCAGC
TTCGCCGAAG CCGATGTGGC GATTCCGCCC TACACGGAAA TCTACCAGTG GGCGGACAAC
AAACTGACGC TGCTGCTGAA CTTCGGCAAC TACATCTTCC TCACCGAGGA TGCCCTGTAC
GTCTCGGCCT ATCTGGGCTC GCTGCAGGTC GCCTTCTTCA GCACCCTGTT GTGCCTGGTG
ATCGGCTACC CCATGGCCTA CGCCATCGCG CGGGCGCCGA AGGAGCGCCA GACCGTACTG
CTGCTGCTGA TCATGATGCC GACCTGGACC GCGATCCTGA TCCGCGTCTA CGCCTGGATG
GGCATTCTCG GCAACAACGG CCTGCTCAAC AGCCTGCTGA TGGGTATCGG CCTGATCGAC
ACGCCGCTGC AGATCCTCAA CACCAACACC GCGGTGTACA TCGGCGTGGT CTATTCGTAC
CTGCCGTTCA TGATCCTGCC GCTCTACGCC AACCTGGTGA AGCACGACCC GAGCCTGCTG
GAGGCCGCCT CCGACCTGGG CTCGAGCAAC TTCAACAACT TCTGGCGGAT CACCGTGCCG
CTGTCGAAGA ACGGCATCAT CGCCGGCTCC ATGCTGGTGT TCATCCCGGT GGTGGGTGAG
TTCGTCATCC CCGAACTGCT CGGCGGCCCG GAGACCCTGA TGATCGGCAA GGTGCTGTGG
CAGGAGTTCT TCAACAACCG CGACTGGCCG GTGGCGTCCG CTCTGGCGGT GGTGATGCTG
GCGATCCTGA TCGTGCCCAT CATCCTCTTC AACCGTAACC AAGCGAAAGA GCTGGAGGGC
CGCCCATGA
|
|---|
| Protein sequence | MKPSKLARYL PSGRHAVIGI PFLWLFLFFL LPFVIVLKIS FAEADVAIPP YTEIYQWADN
KLTLLLNFGN YIFLTEDALY VSAYLGSLQV AFFSTLLCLV IGYPMAYAIA RAPKERQTVL
LLLIMMPTWT AILIRVYAWM GILGNNGLLN SLLMGIGLID TPLQILNTNT AVYIGVVYSY
LPFMILPLYA NLVKHDPSLL EAASDLGSSN FNNFWRITVP LSKNGIIAGS MLVFIPVVGE
FVIPELLGGP ETLMIGKVLW QEFFNNRDWP VASALAVVML AILIVPIILF NRNQAKELEG
RP
|
|---|
| |