| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Lcho_0207 |
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| Symbol | |
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| ID | 6162729 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Leptothrix cholodnii SP-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010524 |
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| Strand | - |
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| Start bp | 217178 |
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| End bp | 218074 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641662951 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001789247 |
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| Protein GI | 171056898 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.0627412 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACA GCACCCGCGC CTCCCGCACA GCCCTCTACG CCTGGCTTCA GGCGGCGCCG
CTGACGGCGG TGTTCGTGCT GTTTTTTGTC GTGCCGCTGC TGCTCATCCT GATGGTGAGC
TTCTGGCAGG CGACCGAATA CGAGCTGATC CCTGCCTTCA CCGTGCAGAG CTATGCCGAT
GTCTTCACCG GCTGCCCGGT GACGGCCGAC GGCGACCTGT GCGTCACGTT CAAGACCTAC
CTCTCGACGC TGCGTTTCGG CGTGCTGACC TGGATCGTGA CGGCGTTGCT GGGCTTTTCG
ATCGCGTATT TCCTGGCCTT CCACGTCAAG ACACAGCTGA TGCAGATGGT GCTGTTCATC
GTCTGCACGG TGCCGTTCTG GACCAGCAAC GTGATCCGCA TGATCTCGTG GGTGCCGCTG
CTCGGACGCA ACGGGCTGGT CAACCAGGGG CTGCAGGGCG CGGGGCTGAT CGACACGCCG
ATCGAGTGGC TGCTGTTCTC CGAGTTCTCG GTCGTGCTGG CCTTCGTGCA CCTGTACACG
ATGTTCATGA TCGTGCCGAT CTTCAACACC CTGATGCGCA TCGACCGCAG CCTGATCGAG
GCCGCCCGCG ATGCCGGCGC CACGCCCTGG CAGACCGTGC GCCACGTGGT GCTGCCGCTC
TCGCGCACCG GGCTGATCAT CGGCTCGATC TTCGTCGTGG CCCTCGTCAT GGGCGACTTC
GTGACGGTGG GCGTGATGGG CGGCCAGCAG ATCGCCTCGG TCGGCAAGAT CATCCAGGTG
CAGGCGAGCT ACCTGCAGTT TCCGCTCGCC GCCGCCAACG CGGTGATCCT GCTGGCGGTG
GTGCTGATGA TGATCGCCAC GCTGATGCGG CTGGTGAACC TGCGCAAGGA ACTCTGA
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| Protein sequence | MKNSTRASRT ALYAWLQAAP LTAVFVLFFV VPLLLILMVS FWQATEYELI PAFTVQSYAD
VFTGCPVTAD GDLCVTFKTY LSTLRFGVLT WIVTALLGFS IAYFLAFHVK TQLMQMVLFI
VCTVPFWTSN VIRMISWVPL LGRNGLVNQG LQGAGLIDTP IEWLLFSEFS VVLAFVHLYT
MFMIVPIFNT LMRIDRSLIE AARDAGATPW QTVRHVVLPL SRTGLIIGSI FVVALVMGDF
VTVGVMGGQQ IASVGKIIQV QASYLQFPLA AANAVILLAV VLMMIATLMR LVNLRKEL
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