Gene Sputcn32_1096 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_1096 
Symbol 
ID5081704 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp1230667 
End bp1231572 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content42% 
IMG OID640498226 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001182623 
Protein GI146292199 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1176] ABC-type spermidine/putrescine transport system, permease component I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0511337 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTAC TCTCAAGATT AAAATGGCCA AGGGGACGCT TCTGGACCAT AGGATTGCCC 
TATGCGTGGC TGCTGTTATT TTTTGCCTTA CCTTTTGCGA TTGTGCTCAA GATCAGTTTT
TCAACGGCTG CTATCGCTAT CCCACCCTAT GAGCCGATGT TCCAATACGC AGATGATGTG
CTAAATATTT TTTTGCATCT AGGTAACTAT CTGATGTTAC TTGATGATTC GCTTTATTAT
TCGGCCTATC TGAGTTCGTT GAAAACCGCA TTTATTTCTA CTTTAGGCTG CTTAATCATT
GGTTATCCCA TGGCTTATGC CATCGCCCGT GCCCCCGCGC GTTTGCAGAC AGTATTGCTA
TTACTGGTGA TGTTGCCCTC ATGGACCTCG TTCTTAATTC GCGTTTATGC TTGGATGGGA
TTGCTCAGCA ATACTGGCAT TATTAATAAT GCACTCATAT GGTTAGGTGT TATCTCTGAG
CCATTACAAA TTTTAAATAC CAATATTGCA GTGTATATCG GCATCATTTA TGCCTATTTA
CCCTTTATGA TCCTGCCGCT ATACGCCAAT TTAGTGAAAC TCGATATGAG TTTAATTGAG
GCCGCATCGG ACTTAGGTTC AAGTCGTTTA AATACCTTCT GGAAAATCAC TTTCCCACTC
TCTAAAAGCG GTGTGATTGC AGGTTCCATG TTGGTGTTTA TTCCTGCAGT GGGTGAGTTT
GTGATCCCCG AATTACTTGG CGGTCCTGAT TCATTAATGA TAGGTAAAGT GCTGTGGCAA
GAATTTTTCA ATAATCGTGA CTGGCCTGTG GCGTCATCAC TGGCGATTGT CATGTTGGCA
CTCTTGATTA TTCCTATTAC TTTATTCCAT CGCTATCAAG CGCGTAGCTT GGAGAAAGAC
CTATGA
 
Protein sequence
MKLLSRLKWP RGRFWTIGLP YAWLLLFFAL PFAIVLKISF STAAIAIPPY EPMFQYADDV 
LNIFLHLGNY LMLLDDSLYY SAYLSSLKTA FISTLGCLII GYPMAYAIAR APARLQTVLL
LLVMLPSWTS FLIRVYAWMG LLSNTGIINN ALIWLGVISE PLQILNTNIA VYIGIIYAYL
PFMILPLYAN LVKLDMSLIE AASDLGSSRL NTFWKITFPL SKSGVIAGSM LVFIPAVGEF
VIPELLGGPD SLMIGKVLWQ EFFNNRDWPV ASSLAIVMLA LLIIPITLFH RYQARSLEKD
L