Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_1096 |
Symbol | |
ID | 5081704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 1230667 |
End bp | 1231572 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 640498226 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001182623 |
Protein GI | 146292199 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0511337 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTAC TCTCAAGATT AAAATGGCCA AGGGGACGCT TCTGGACCAT AGGATTGCCC TATGCGTGGC TGCTGTTATT TTTTGCCTTA CCTTTTGCGA TTGTGCTCAA GATCAGTTTT TCAACGGCTG CTATCGCTAT CCCACCCTAT GAGCCGATGT TCCAATACGC AGATGATGTG CTAAATATTT TTTTGCATCT AGGTAACTAT CTGATGTTAC TTGATGATTC GCTTTATTAT TCGGCCTATC TGAGTTCGTT GAAAACCGCA TTTATTTCTA CTTTAGGCTG CTTAATCATT GGTTATCCCA TGGCTTATGC CATCGCCCGT GCCCCCGCGC GTTTGCAGAC AGTATTGCTA TTACTGGTGA TGTTGCCCTC ATGGACCTCG TTCTTAATTC GCGTTTATGC TTGGATGGGA TTGCTCAGCA ATACTGGCAT TATTAATAAT GCACTCATAT GGTTAGGTGT TATCTCTGAG CCATTACAAA TTTTAAATAC CAATATTGCA GTGTATATCG GCATCATTTA TGCCTATTTA CCCTTTATGA TCCTGCCGCT ATACGCCAAT TTAGTGAAAC TCGATATGAG TTTAATTGAG GCCGCATCGG ACTTAGGTTC AAGTCGTTTA AATACCTTCT GGAAAATCAC TTTCCCACTC TCTAAAAGCG GTGTGATTGC AGGTTCCATG TTGGTGTTTA TTCCTGCAGT GGGTGAGTTT GTGATCCCCG AATTACTTGG CGGTCCTGAT TCATTAATGA TAGGTAAAGT GCTGTGGCAA GAATTTTTCA ATAATCGTGA CTGGCCTGTG GCGTCATCAC TGGCGATTGT CATGTTGGCA CTCTTGATTA TTCCTATTAC TTTATTCCAT CGCTATCAAG CGCGTAGCTT GGAGAAAGAC CTATGA
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Protein sequence | MKLLSRLKWP RGRFWTIGLP YAWLLLFFAL PFAIVLKISF STAAIAIPPY EPMFQYADDV LNIFLHLGNY LMLLDDSLYY SAYLSSLKTA FISTLGCLII GYPMAYAIAR APARLQTVLL LLVMLPSWTS FLIRVYAWMG LLSNTGIINN ALIWLGVISE PLQILNTNIA VYIGIIYAYL PFMILPLYAN LVKLDMSLIE AASDLGSSRL NTFWKITFPL SKSGVIAGSM LVFIPAVGEF VIPELLGGPD SLMIGKVLWQ EFFNNRDWPV ASSLAIVMLA LLIIPITLFH RYQARSLEKD L
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