More than 300 homologs were found in PanDaTox collection
for query gene M446_4740 on replicon NC_010511
Organism: Methylobacterium sp. 4-46



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_4740  binding-protein-dependent transport systems inner membrane component  100 
 
 
318 aa  633  1e-180  Methylobacterium sp. 4-46  Bacteria  normal  0.284735  normal 
 
 
-
 
NC_011894  Mnod_0102  binding-protein-dependent transport systems inner membrane component  87.74 
 
 
317 aa  543  1e-153  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0368205  n/a   
 
 
-
 
NC_010676  Bphyt_5258  binding-protein-dependent transport systems inner membrane component  69.52 
 
 
304 aa  435  1e-121  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.837407 
 
 
-
 
NC_010505  Mrad2831_3944  binding-protein-dependent transport systems inner membrane component  81.14 
 
 
311 aa  429  1e-119  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5901  binding-protein-dependent transport systems inner membrane component  69.97 
 
 
304 aa  431  1e-119  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1360  ABC spermidine/putrescine transporter, inner membrane subunit  69.18 
 
 
304 aa  414  9.999999999999999e-116  Burkholderia xenovorans LB400  Bacteria  normal  0.80723  normal  0.0410595 
 
 
-
 
NC_007948  Bpro_1009  binding-protein-dependent transport systems inner membrane component  68.23 
 
 
278 aa  413  1e-114  Polaromonas sp. JS666  Bacteria  normal  0.507901  hitchhiker  0.00360584 
 
 
-
 
NC_008781  Pnap_3270  binding-protein-dependent transport systems inner membrane component  67.5 
 
 
304 aa  411  1e-114  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_0207  binding-protein-dependent transport systems inner membrane component  66.1 
 
 
298 aa  404  1e-111  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0627412 
 
 
-
 
NC_012791  Vapar_3535  binding-protein-dependent transport systems inner membrane component  69.08 
 
 
305 aa  392  1e-108  Variovorax paradoxus S110  Bacteria  normal  0.273694  n/a   
 
 
-
 
NC_008786  Veis_2471  binding-protein-dependent transport systems inner membrane component  68.85 
 
 
303 aa  389  1e-107  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A3373  ABC transporter permease protein  68.9 
 
 
325 aa  381  1e-105  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.713677 
 
 
-
 
NC_007494  RSP_3336  ABC spermidine/putrescine transporter, inner membrane subunit  58.36 
 
 
287 aa  334  9e-91  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_4062  binding-protein-dependent transport systems inner membrane component  58.36 
 
 
287 aa  334  9e-91  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.369839  normal  0.616625 
 
 
-
 
NC_009485  BBta_2892  ABC transporter permease  66.28 
 
 
276 aa  333  3e-90  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0679863 
 
 
-
 
NC_009429  Rsph17025_3635  hypothetical protein  57.65 
 
 
287 aa  319  5e-86  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.493501  normal 
 
 
-
 
NC_011369  Rleg2_2657  binding-protein-dependent transport systems inner membrane component  56.33 
 
 
301 aa  314  9.999999999999999e-85  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.364659  normal 
 
 
-
 
NC_011988  Avi_6277  ABC transporter membrane spanning protein (spermidine/putrescine)  58.11 
 
 
301 aa  311  7.999999999999999e-84  Agrobacterium vitis S4  Bacteria  normal  0.187889  n/a   
 
 
-
 
NC_012850  Rleg_2918  binding-protein-dependent transport systems inner membrane component  54.4 
 
 
304 aa  308  5.9999999999999995e-83  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.241078  normal 
 
 
-
 
NC_011981  Avi_7130  ABC transporter membrane spanning protein (spermidine/putrescine)  47.2 
 
 
289 aa  267  2e-70  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_1906  ABC transporter permease  49.65 
 
 
293 aa  266  4e-70  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.343914  normal 
 
 
-
 
NC_011988  Avi_5874  ABC transporter membrane spanning protein (spermidine/putrescine)  38.23 
 
 
299 aa  208  9e-53  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_0994  binding-protein-dependent transport systems inner membrane component  36.96 
 
 
307 aa  181  1e-44  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_1599  spermidine/putrescine transport system permease protein  35.07 
 
 
293 aa  154  1e-36  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.120621  normal 
 
 
-
 
NC_008687  Pden_4068  binding-protein-dependent transport systems inner membrane component  36.2 
 
 
289 aa  146  4.0000000000000006e-34  Paracoccus denitrificans PD1222  Bacteria  normal  0.270331  normal  0.616396 
 
 
-
 
NC_007493  RSP_0017  ABC spermidine/putrescine transporter, inner membrane subunit  38.22 
 
 
295 aa  145  8.000000000000001e-34  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_1646  binding-protein-dependent transport systems inner membrane component  38.22 
 
 
295 aa  145  8.000000000000001e-34  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.257053  normal  0.557332 
 
 
-
 
NC_011729  PCC7424_3605  binding-protein-dependent transport systems inner membrane component  34.39 
 
 
295 aa  143  4e-33  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0391464 
 
 
-
 
NC_009428  Rsph17025_2172  binding-protein-dependent transport systems inner membrane component  37.31 
 
 
295 aa  142  7e-33  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0510016  normal 
 
 
-
 
NC_005945  BAS1200  spermidine/putrescine ABC transporter permease  34.67 
 
 
282 aa  140  3.9999999999999997e-32  Bacillus anthracis str. Sterne  Bacteria  normal  0.163674  n/a   
 
 
-
 
NC_007530  GBAA_1298  spermidine/putrescine ABC transporter permease  34.67 
 
 
282 aa  140  3.9999999999999997e-32  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4006  spermidine/putrescine ABC transporter, permease protein  33.58 
 
 
282 aa  139  3.9999999999999997e-32  Bacillus cereus G9842  Bacteria  normal  0.369906  hitchhiker  0.00000000961653 
 
 
-
 
NC_011725  BCB4264_A1338  spermidine/putrescine ABC transporter, permease protein  33.58 
 
 
282 aa  139  3.9999999999999997e-32  Bacillus cereus B4264  Bacteria  normal  0.727492  n/a   
 
 
-
 
NC_009654  Mmwyl1_3521  binding-protein-dependent transport systems inner membrane component  35.44 
 
 
296 aa  139  7.999999999999999e-32  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.248217 
 
 
-
 
NC_013422  Hneap_2375  binding-protein-dependent transport systems inner membrane component  30.68 
 
 
304 aa  139  8.999999999999999e-32  Halothiobacillus neapolitanus c2  Bacteria  normal  0.113051  n/a   
 
 
-
 
NC_003910  CPS_4673  putrescine ABC transporter, permease protein  31.76 
 
 
317 aa  136  4e-31  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_1062  binding-protein-dependent transport systems inner membrane component  35.91 
 
 
287 aa  136  5e-31  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_2402  binding-protein-dependent transport systems inner membrane component  37.05 
 
 
362 aa  136  5e-31  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2914  binding-protein-dependent transport systems inner membrane component  38.2 
 
 
278 aa  135  9e-31  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3190  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
301 aa  134  3e-30  Shewanella baltica OS223  Bacteria  normal  0.90235  normal  0.0128197 
 
 
-
 
NC_009052  Sbal_1110  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
301 aa  134  3e-30  Shewanella baltica OS155  Bacteria  hitchhiker  0.000446726  n/a   
 
 
-
 
NC_009901  Spea_0948  binding-protein-dependent transport systems inner membrane component  32.13 
 
 
301 aa  134  3e-30  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_1201  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
301 aa  134  3e-30  Shewanella baltica OS195  Bacteria  normal  0.0492814  normal 
 
 
-
 
NC_009665  Shew185_1168  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
301 aa  134  3e-30  Shewanella baltica OS185  Bacteria  normal  0.0126623  n/a   
 
 
-
 
NC_008463  PA14_04240  putative permease of ABC transporter  33.33 
 
 
309 aa  133  3.9999999999999996e-30  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_0371  binding-protein-dependent transport systems inner membrane component  32.02 
 
 
281 aa  132  6e-30  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_2916  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
301 aa  132  6e-30  Shewanella sp. MR-4  Bacteria  hitchhiker  0.0057841  normal  0.437411 
 
 
-
 
NC_008322  Shewmr7_2998  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
301 aa  132  6e-30  Shewanella sp. MR-7  Bacteria  normal  0.0768287  normal 
 
 
-
 
NC_008577  Shewana3_3095  binding-protein-dependent transport systems inner membrane component  34.07 
 
 
301 aa  132  6e-30  Shewanella sp. ANA-3  Bacteria  normal  0.0587247  normal 
 
 
-
 
NC_009438  Sputcn32_1096  binding-protein-dependent transport systems inner membrane component  34.19 
 
 
301 aa  131  1.0000000000000001e-29  Shewanella putrefaciens CN-32  Bacteria  normal  0.0511337  n/a   
 
 
-
 
NC_003909  BCE_1399  spermidine/putrescine ABC transporter, permease protein  36.64 
 
 
282 aa  131  2.0000000000000002e-29  Bacillus cereus ATCC 10987  Bacteria  normal  0.291151  n/a   
 
 
-
 
NC_005957  BT9727_1178  spermidine/putrescine ABC transporter, permease  36.64 
 
 
282 aa  130  2.0000000000000002e-29  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1376  spermidine/putrescine ABC transporter, permease protein  36.64 
 
 
282 aa  130  2.0000000000000002e-29  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000078006 
 
 
-
 
NC_008312  Tery_2818  binding-protein-dependent transport systems inner membrane component  33.69 
 
 
293 aa  130  2.0000000000000002e-29  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.913053 
 
 
-
 
NC_008786  Veis_0822  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
307 aa  130  3e-29  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0348  binding-protein-dependent transport systems inner membrane component  36.79 
 
 
302 aa  130  4.0000000000000003e-29  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_2097  binding-protein-dependent transport systems inner membrane component  33.78 
 
 
313 aa  130  4.0000000000000003e-29  Polaromonas sp. JS666  Bacteria  normal  0.036296  normal  0.0908673 
 
 
-
 
NC_004578  PSPTO_5302  putrescine ABC transporter, permease protein  33.47 
 
 
317 aa  129  5.0000000000000004e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5402  binding-protein dependent transport system inner membrane protein  33.87 
 
 
306 aa  129  5.0000000000000004e-29  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.434189  decreased coverage  0.000259931 
 
 
-
 
NC_011658  BCAH187_A1440  spermidine/putrescine ABC transporter, permease protein  36.21 
 
 
282 aa  129  5.0000000000000004e-29  Bacillus cereus AH187  Bacteria  hitchhiker  0.00199938  n/a   
 
 
-
 
NC_006274  BCZK1180  spermidine/putrescine ABC transporter, permease  36.21 
 
 
282 aa  129  6e-29  Bacillus cereus E33L  Bacteria  decreased coverage  0.00976508  n/a   
 
 
-
 
NC_008781  Pnap_2860  binding-protein-dependent transport systems inner membrane component  33.04 
 
 
305 aa  129  6e-29  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.055919  normal  0.0738554 
 
 
-
 
NC_010506  Swoo_1133  binding-protein-dependent transport systems inner membrane component  32.84 
 
 
301 aa  129  7.000000000000001e-29  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_1202  binding-protein-dependent transport systems inner membrane component  36.05 
 
 
282 aa  129  7.000000000000001e-29  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_0975  binding-protein-dependent transport systems inner membrane component  31.41 
 
 
301 aa  129  8.000000000000001e-29  Shewanella loihica PV-4  Bacteria  normal  normal 
 
 
-
 
NC_010571  Oter_3797  binding-protein-dependent transport systems inner membrane component  36.79 
 
 
293 aa  129  8.000000000000001e-29  Opitutus terrae PB90-1  Bacteria  normal  0.282728  normal  0.346608 
 
 
-
 
NC_010501  PputW619_0285  binding-protein-dependent transport systems inner membrane component  33.6 
 
 
306 aa  129  8.000000000000001e-29  Pseudomonas putida W619  Bacteria  normal  normal  0.678954 
 
 
-
 
NC_010322  PputGB1_5238  binding-protein-dependent transport systems inner membrane component  34.68 
 
 
306 aa  128  1.0000000000000001e-28  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_1262  ABC-type spermidine/putrescine transport system  37.69 
 
 
322 aa  129  1.0000000000000001e-28  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3007  binding-protein-dependent transport systems inner membrane component  32.84 
 
 
299 aa  127  2.0000000000000002e-28  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.360446  n/a   
 
 
-
 
NC_008043  TM1040_3637  binding-protein-dependent transport systems inner membrane component  37.93 
 
 
289 aa  127  3e-28  Ruegeria sp. TM1040  Bacteria  normal  normal  0.518454 
 
 
-
 
NC_002947  PP_5178  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
306 aa  127  4.0000000000000003e-28  Pseudomonas putida KT2440  Bacteria  normal  0.542321  normal 
 
 
-
 
NC_009512  Pput_5085  binding-protein-dependent transport systems inner membrane component  34.27 
 
 
306 aa  127  4.0000000000000003e-28  Pseudomonas putida F1  Bacteria  normal  0.358799  normal  0.347676 
 
 
-
 
NC_004347  SO_1272  polyamine ABC transporter, permease protein  33.46 
 
 
301 aa  126  5e-28  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007005  Psyr_4862  binding-protein dependent transport system inner membrane protein  34.82 
 
 
306 aa  126  5e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_03950  polyamine transport protein PotH  37.19 
 
 
293 aa  126  5e-28  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008242  Meso_4253  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
301 aa  126  6e-28  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0354  binding-protein-dependent transport systems inner membrane component  28.73 
 
 
305 aa  125  7e-28  Rhodoferax ferrireducens T118  Bacteria  normal  0.0181159  n/a   
 
 
-
 
NC_010625  Bphy_6579  binding-protein-dependent transport systems inner membrane component  34.01 
 
 
302 aa  125  8.000000000000001e-28  Burkholderia phymatum STM815  Bacteria  normal  0.21378  normal  0.43558 
 
 
-
 
NC_006369  lpl1147  hypothetical protein  35.47 
 
 
282 aa  125  8.000000000000001e-28  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_011368  Rleg2_5131  binding-protein-dependent transport systems inner membrane component  32.97 
 
 
275 aa  125  8.000000000000001e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp1142  hypothetical protein  35.45 
 
 
282 aa  125  1e-27  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007511  Bcep18194_B2812  ABC spermidine/putrescine transporter, inner membrane subunit  30.91 
 
 
328 aa  125  1e-27  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3074  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
287 aa  125  1e-27  Jannaschia sp. CCS1  Bacteria  normal  0.716489  normal  0.098121 
 
 
-
 
NC_011982  Avi_8305  ABC transporter membrane spanning protein (mannopine)  30.69 
 
 
285 aa  125  1e-27  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_2804  binding-protein-dependent transport systems inner membrane component  28.62 
 
 
299 aa  125  1e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.22661  n/a   
 
 
-
 
NC_007510  Bcep18194_A6347  ABC spermidine/putrescine transporter, inner membrane subunit  30.91 
 
 
328 aa  124  2e-27  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1542  ABC spermidine/putrescine transporter, inner membrane subunit  30.6 
 
 
281 aa  124  2e-27  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.412621 
 
 
-
 
NC_008060  Bcen_2384  binding-protein-dependent transport systems inner membrane component  30.06 
 
 
328 aa  124  2e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.833701  n/a   
 
 
-
 
NC_009952  Dshi_1053  binding-protein-dependent transport systems inner membrane component  29.61 
 
 
305 aa  124  2e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_3017  binding-protein-dependent transport systems inner membrane component  30.06 
 
 
328 aa  124  2e-27  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_2998  binding-protein-dependent transport systems inner membrane component  30.06 
 
 
328 aa  124  2e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  0.131392  n/a   
 
 
-
 
NC_010505  Mrad2831_2872  binding-protein-dependent transport systems inner membrane component  33.44 
 
 
323 aa  124  3e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.134658 
 
 
-
 
NC_010676  Bphyt_6152  binding-protein-dependent transport systems inner membrane component  32.11 
 
 
301 aa  124  3e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0394  polyamine transport protein PotH  36.18 
 
 
303 aa  124  3e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  0.72562  n/a   
 
 
-
 
NC_009049  Rsph17029_1062  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
297 aa  123  3e-27  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.756738  normal  0.356506 
 
 
-
 
NC_009075  BURPS668_A0122  ABC transporter, permease protein  35.16 
 
 
290 aa  123  4e-27  Burkholderia pseudomallei 668  Bacteria  normal  0.0859653  n/a   
 
 
-
 
NC_007952  Bxe_B1508  ABC spermidine/putrescine transporter, inner membrane subunit  33.2 
 
 
301 aa  123  5e-27  Burkholderia xenovorans LB400  Bacteria  normal  0.0734046  normal  0.0460711 
 
 
-
 
NC_009674  Bcer98_1008  binding-protein-dependent transport systems inner membrane component  33.62 
 
 
281 aa  122  6e-27  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2970  binding-protein-dependent transport systems inner membrane component  32.06 
 
 
301 aa  122  7e-27  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.994225 
 
 
-
 
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