| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_8305 |
|---|
| Symbol | attA2 |
|---|
| ID | 7365257 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011982 |
|---|
| Strand | - |
|---|
| Start bp | 229784 |
|---|
| End bp | 230641 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643641862 |
|---|
| Product | ABC transporter membrane spanning protein (mannopine) |
|---|
| Protein accession | YP_002540159 |
|---|
| Protein GI | 222080295 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTCC GCCGCGAAGC TTACATTTTA ACGACGCCGG CAGCGCTACT TTTTCTTGGT
ATCGTTGCCG TACCTCTCGT CATGACGGTC ATCCTTTCCC TCAATGAATG GAGCTCGACC
GAGGGCATCA TTCCGGTTCT GGTGACCAAA AACTACAGGG AAATATTCTC CGACAGCTAC
TTTGCGGAGA TTTTCTTCCG AACTCTCCGG ATATCCCTCC TGGTGACGTT GACCAGCATT
CTCATCGGTG TGCCGGAGGC GTACATTCTC CGACGCATGC GTGAACCCTG GCGCTCCATG
ATGATTCTGG TCGTCATCGG GCCGCTGTTG GTTTCCGTCG TGGCTCGAAC GCTTGGCTGG
GCGCTGATCC TAGCTGGTAA CGGTATCCTT TCACAAAGTC TGCAAAAGCT GGGGCTCGTC
AACGCGCCTG TCTCGCTGAT GTTCACGGAA ACGGGGGTCG TCATAGCGCT GACACACGTT
CTCGTGCCGT TTATGGTCCT CGCCGTATGG GCCTCGCTCG GGCGCATGGA TCCGTCGACC
GAGCGGGCGG CCTCGTCACT TGGGGCCGGA CCGGCGACTA TTTTCAGGCG TATTGTTCTA
CCCCAAGCAA TGCCCGGTAT TTTATCAGGC AGTATCGTCG TCTTCACGCT TTCCGCCAGC
GCCTTTGCAA CGCCTGCGAT TATCGGGGGC AGGCGGCTCA AGGTGGCTGC AACGCTCGCC
TATGACGAGT TCCTGAATAC GCTGAACTGG CCGCTTGGTG CCGCGATCGC CGTCCTATTG
CTGATCGGCA TCGTGTTCCT TGTCATCGGA TGGAATCGTC TCGTGGAACG TCGCTACTCA
CAGGTATTTT CGTCATGA
|
|---|
| Protein sequence | MSVRREAYIL TTPAALLFLG IVAVPLVMTV ILSLNEWSST EGIIPVLVTK NYREIFSDSY
FAEIFFRTLR ISLLVTLTSI LIGVPEAYIL RRMREPWRSM MILVVIGPLL VSVVARTLGW
ALILAGNGIL SQSLQKLGLV NAPVSLMFTE TGVVIALTHV LVPFMVLAVW ASLGRMDPST
ERAASSLGAG PATIFRRIVL PQAMPGILSG SIVVFTLSAS AFATPAIIGG RRLKVAATLA
YDEFLNTLNW PLGAAIAVLL LIGIVFLVIG WNRLVERRYS QVFSS
|
|---|
| |