Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3007 |
Symbol | |
ID | 4279911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3611271 |
End bp | 3612170 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638135827 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_751684 |
Protein GI | 114564170 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.360446 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAATC CATTGAAAAT ATTCAAAGGC CGACATCTCA CCATGGGTAT CCCTTACCTA TGGTTGTTAC TGTTTTTTGC CTTACCGTTC GCCATTGTAT TAAAGCTGAG CTTTTCGACT GCTGCGATTG CGATTCCACC GTACGAGCCA ACGTTTAATT ATGTTGATGA GGCGCTAAAT ATATTCGTTA ATCTGGGTAA CTATTTGTTG TTACTGCAAG ATTCAATGTA TTACATGGCG TACTTAACCT CATTGAAAAT GGCATTTGTT GCTACACTTG GCTGTTTGGT GCTTGGTTTT CCGATGGCTT ACGCCATTGC CCGCGCCCCC GTAAAAATGC AGGCGGTATT GCTGTTACTG GTGATGTTGC CGTCGTGGAC CTCATTTTTG ATCCGTGTAT ACGCATGGAT GGGTATTTTA AGTAACAACG GTTTAATTAA TAACGCCTTG ACTTGGTTAG GGGTTATTTC TGAACCAATC CAAATGCTGA ATACTAATTT TGCAGTATAT ATCGGTATCA TTTACGCCTA TTTGCCGTTT ATGATTTTGC CGCTTTACGC CACCCTAGTT AAATTGGATT TAAGCTTACT AGAAGCCGCT TCCGATTTAG GCTCTAGCAG TATCAATACT TTCTGGAAAA TTACTCTGCC ATTATCAATG GGCGGTGTAA TCGCTGGCTC TATGTTGGTC TTTATCCCTG CCGTGGGTGA GTTTGTTATT CCTGAACTGC TTGGTGGTCC AGACTCATTA ATGATTGGTA AGGTGTTGTG GCAAGAGTTC TTTAATAACC GCGACTGGCC AGTAGCTTCA TCATTAGCGA TTGTGATGCT AGCGTTATTG ATTATCCCAA TTACTTTGTT CCACCGTTAT CAGTCACGCA GCATGGAGAG CGACGTATGA
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Protein sequence | MKNPLKIFKG RHLTMGIPYL WLLLFFALPF AIVLKLSFST AAIAIPPYEP TFNYVDEALN IFVNLGNYLL LLQDSMYYMA YLTSLKMAFV ATLGCLVLGF PMAYAIARAP VKMQAVLLLL VMLPSWTSFL IRVYAWMGIL SNNGLINNAL TWLGVISEPI QMLNTNFAVY IGIIYAYLPF MILPLYATLV KLDLSLLEAA SDLGSSSINT FWKITLPLSM GGVIAGSMLV FIPAVGEFVI PELLGGPDSL MIGKVLWQEF FNNRDWPVAS SLAIVMLALL IIPITLFHRY QSRSMESDV
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