Gene Sfri_3007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3007 
Symbol 
ID4279911 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3611271 
End bp3612170 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content42% 
IMG OID638135827 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_751684 
Protein GI114564170 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1176] ABC-type spermidine/putrescine transport system, permease component I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.360446 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAATC CATTGAAAAT ATTCAAAGGC CGACATCTCA CCATGGGTAT CCCTTACCTA 
TGGTTGTTAC TGTTTTTTGC CTTACCGTTC GCCATTGTAT TAAAGCTGAG CTTTTCGACT
GCTGCGATTG CGATTCCACC GTACGAGCCA ACGTTTAATT ATGTTGATGA GGCGCTAAAT
ATATTCGTTA ATCTGGGTAA CTATTTGTTG TTACTGCAAG ATTCAATGTA TTACATGGCG
TACTTAACCT CATTGAAAAT GGCATTTGTT GCTACACTTG GCTGTTTGGT GCTTGGTTTT
CCGATGGCTT ACGCCATTGC CCGCGCCCCC GTAAAAATGC AGGCGGTATT GCTGTTACTG
GTGATGTTGC CGTCGTGGAC CTCATTTTTG ATCCGTGTAT ACGCATGGAT GGGTATTTTA
AGTAACAACG GTTTAATTAA TAACGCCTTG ACTTGGTTAG GGGTTATTTC TGAACCAATC
CAAATGCTGA ATACTAATTT TGCAGTATAT ATCGGTATCA TTTACGCCTA TTTGCCGTTT
ATGATTTTGC CGCTTTACGC CACCCTAGTT AAATTGGATT TAAGCTTACT AGAAGCCGCT
TCCGATTTAG GCTCTAGCAG TATCAATACT TTCTGGAAAA TTACTCTGCC ATTATCAATG
GGCGGTGTAA TCGCTGGCTC TATGTTGGTC TTTATCCCTG CCGTGGGTGA GTTTGTTATT
CCTGAACTGC TTGGTGGTCC AGACTCATTA ATGATTGGTA AGGTGTTGTG GCAAGAGTTC
TTTAATAACC GCGACTGGCC AGTAGCTTCA TCATTAGCGA TTGTGATGCT AGCGTTATTG
ATTATCCCAA TTACTTTGTT CCACCGTTAT CAGTCACGCA GCATGGAGAG CGACGTATGA
 
Protein sequence
MKNPLKIFKG RHLTMGIPYL WLLLFFALPF AIVLKLSFST AAIAIPPYEP TFNYVDEALN 
IFVNLGNYLL LLQDSMYYMA YLTSLKMAFV ATLGCLVLGF PMAYAIARAP VKMQAVLLLL
VMLPSWTSFL IRVYAWMGIL SNNGLINNAL TWLGVISEPI QMLNTNFAVY IGIIYAYLPF
MILPLYATLV KLDLSLLEAA SDLGSSSINT FWKITLPLSM GGVIAGSMLV FIPAVGEFVI
PELLGGPDSL MIGKVLWQEF FNNRDWPVAS SLAIVMLALL IIPITLFHRY QSRSMESDV