| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_6277 |
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| Symbol | |
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| ID | 7381316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 1270265 |
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| End bp | 1271170 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643649738 |
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| Product | ABC transporter membrane spanning protein (spermidine/putrescine) |
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| Protein accession | YP_002547962 |
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| Protein GI | 222107171 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.187889 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAACAG TGCGGTTTAT AGGCGTCGGC AAACCAAAGC CAAGGCGCGA AATCCGCGTG
CCTGCCTGGC TGACAGCCTA TCTTCAAGCA GCCCCCCTGG CGCTTATCCT CGGCGGATTT
CTACTGTTGC CGATCCTGAT GATCGTGATT GTCAGCTTTT GGGATTATGA CTTCGCCCAG
ATGTATCCCG GTTTTGTCAC CTTCAATTAT ACGGAAACGC TTGGTTCCTG GGTCACCTGG
AAAACCTATC TAAACACGCT GAAATTCGCA GGCATTGTCT GGCTCCTGAC GCTGTTCATC
GGCTTCTGGG TCGCCTATTT TCTCGCCTTC CACATCCGTA GCGCCGCCAT GCAGAGCGTG
CTTTTCCTGA TCTGCACCGT GCCGTTCCTG ACCTCGAATA TCATCCGGAT GATTTCCTGG
ATTCCGGTTC TGGGGCGCAA TGGATTGGTC AACCAGGCGT TGGTCGGAAC CGGCATCATT
CCACAGCCGC TGGAATGGCT GCTTTATTCA GACTTTGCCG TGGTGCTGGC CATGGTGCAT
CTCTACACCC TGTTCATGGT CACGCCGATC TTCAATACGC TGATGCGGAT CGACAAGGCG
CTGGTGGAGG CCGCAAGGGA CGCAGGTGCT TCGAGCCTGC AAATCCTCAC CAATGTCATT
CTGCCGCTCG CCAAGCCCGG CATGGCTATC GGCACAATTT TCGTCGTCAC TTTGACCATG
GCCGATTTCT CCACCGTACA GGTGATGTCC GGTGGCCAGA GCGCCTCGGT GGCGCTGATC
ATGAAGAACC AGATGTCACT GCTGCAATAT CCAGCCGCTG CCGCCAATGC CGTGGTGCTG
CTGATCCTCG TCCTGCTGAT GGTCGCGGGG ATCTTGCGCA TCGTCGATAT CCGCAAGGAG
CTGTAA
|
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| Protein sequence | MATVRFIGVG KPKPRREIRV PAWLTAYLQA APLALILGGF LLLPILMIVI VSFWDYDFAQ
MYPGFVTFNY TETLGSWVTW KTYLNTLKFA GIVWLLTLFI GFWVAYFLAF HIRSAAMQSV
LFLICTVPFL TSNIIRMISW IPVLGRNGLV NQALVGTGII PQPLEWLLYS DFAVVLAMVH
LYTLFMVTPI FNTLMRIDKA LVEAARDAGA SSLQILTNVI LPLAKPGMAI GTIFVVTLTM
ADFSTVQVMS GGQSASVALI MKNQMSLLQY PAAAANAVVL LILVLLMVAG ILRIVDIRKE
L
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