| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5402 |
|---|
| Symbol | |
|---|
| ID | 3714756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 6064812 |
|---|
| End bp | 6065732 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | |
|---|
| Product | binding-protein dependent transport system inner membrane protein |
|---|
| Protein accession | YP_351130 |
|---|
| Protein GI | 77461623 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.434189 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000259931 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAACATGC GCAAATTCAA ACGCCGGCTC AATCGAATAA TTCCCGGTGG CCGCCAGTTG
GTCATCGGGG TTCCGTTCAT CTGGCTGTTC CTGTTCTTCA TGCTGCCGTT CTTCATCGTC
CTGAAGATCA GCTTCGCCGA AGCGGACGTG GCCATTCCGC CGTACACCGA GATCTACACT
TACGCCGAGC AGAAGCTGCA ACTGCTGCTG AACCTGGGCA ACTACGCGAT GCTCGGCGAC
GACGAGCTGT ACATCGCCGC CTACCTCGGC TCGCTGAAGA TGGCATTTTT CAGCACGCTG
CTGTGCCTGT TGATCGGTTA CCCGATGGCC TACGCCATCG CCAGCGCCCG CAAAGAGCTG
CAAACGGTGC TGGTGCTGCT GATCATGATG CCGACCTGGA CCGCGATCCT GATCCGCGTC
TATGCGTGGA TGGGTATCCT CAGCAACAAC GGCCTGCTCA ACGGCTTCCT GATGAGCATG
GGTTTGATCG ACGAGCCGCT GCAGATTCTC AACACCAACC TCGCGGTGTA CATCGGCGTC
GTCTACTCGT ACCTGCCGTT CATGATCCTG CCGCTGTACG CCAACCTGGT GAAGCACGAC
ACCAGCCTGC TGGAGGCCGC TTCCGACCTC GGTTCGAGCA CCTTCAACAG CTTCTGGAAA
ATCACCGTGC CGCTGTCCAA GAACGGCATC ATCGCCGGCT GCATGCTGGT GTTCATCCCG
GTGGTGGGCG AGTTCGTGAT CCCGGAACTG CTCGGCGGTC CGGAAACCCT GATGATCGGT
AAAGTGCTCT GGCAAGAGTT CTTCAACAAC CGTGACTGGC CGGTGGCGTC CGCCCTGGCG
GTGGTGATGC TGGCGATCCT GATCGTGCCG ATCATCCTGT TCAACCGCAG TCAGGCCAAG
GAAATGGAGG GTAAAGAATG A
|
|---|
| Protein sequence | MNMRKFKRRL NRIIPGGRQL VIGVPFIWLF LFFMLPFFIV LKISFAEADV AIPPYTEIYT
YAEQKLQLLL NLGNYAMLGD DELYIAAYLG SLKMAFFSTL LCLLIGYPMA YAIASARKEL
QTVLVLLIMM PTWTAILIRV YAWMGILSNN GLLNGFLMSM GLIDEPLQIL NTNLAVYIGV
VYSYLPFMIL PLYANLVKHD TSLLEAASDL GSSTFNSFWK ITVPLSKNGI IAGCMLVFIP
VVGEFVIPEL LGGPETLMIG KVLWQEFFNN RDWPVASALA VVMLAILIVP IILFNRSQAK
EMEGKE
|
|---|
| |