| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_7130 |
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| Symbol | |
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| ID | 7380174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011981 |
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| Strand | + |
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| Start bp | 105491 |
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| End bp | 106360 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643641252 |
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| Product | ABC transporter membrane spanning protein (spermidine/putrescine) |
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| Protein accession | YP_002539549 |
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| Protein GI | 222102510 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACTCT CCTCGGCAAA GCGGGTATCG CTTTTGCAAA TCGCGCCTAT GGCGCTGGTT
CTGGTGTGTT TCGTGATCCT GCCATTGGCG ATGATTATTG CTGTCAGCTT CATGGATTAC
GGTTTTGCCG AGGTGATCCC GGAGTTCATC TGGGAAAATT ATCTTGATAT TTTCACCTCT
GAACTGACGC TCAGGCTGTA TCTCCAGACG TTCAAATTCC TGGCGATTGT CTGGGCGATC
ACGCTGTTTC TCGGCTTTAC CATCGCCTAT TATCTGATGT TTCATGTCCG CAGCCCAATC
GTGCGGGCGC TGTGCATTGC GGCCTGCGCC ATACCGTTCT GGACATCAGG GCCAATCCGC
ATGGTGTCCT GGGTGCCGCT GCTGGGGCGC GAAGGGCTGG TCAATCAGGT CTTGCTGCAT
CTGCATATCA TAGAGCAGCC GCTCTCTTGG CTGCTCTATT CGGAATTTTC CGTCATCGTC
GTCTACGTCA ATGTGCTGAC GCTGGCCATG TTGGGACCGA TCGCCAATTC CATGGCAAAG
ATTGATAAAA ACCTTCTGCA TGCCGCCCGC GATCAGGGGG CAAGTGAGGG ACAGATCATC
CGTCTGGTGA TTATCCCACT GATCAAACCC GGCATCGCCA TAGGCTCGAT TTTTATTGTG
ACGGCGGTGA TGGGCGATTT CTTCATCGTC AAACAGATGG GCGGCGGCCA GATCAACACG
GCGGTGGGGG CCATCGCCAC CGAGCTGAAC GCCTTCCAAT ACCCGCCCGC TGCGGCAAAA
TCGGTTGTGA TGCTGGTCAT TGTGCTGGGC TTCGTCGCCT CTCTGCTGCG CCTCGTTGAT
ATCCGAAAAG AACTGGCCAA TCAGGAGTGA
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| Protein sequence | MSLSSAKRVS LLQIAPMALV LVCFVILPLA MIIAVSFMDY GFAEVIPEFI WENYLDIFTS
ELTLRLYLQT FKFLAIVWAI TLFLGFTIAY YLMFHVRSPI VRALCIAACA IPFWTSGPIR
MVSWVPLLGR EGLVNQVLLH LHIIEQPLSW LLYSEFSVIV VYVNVLTLAM LGPIANSMAK
IDKNLLHAAR DQGASEGQII RLVIIPLIKP GIAIGSIFIV TAVMGDFFIV KQMGGGQINT
AVGAIATELN AFQYPPAAAK SVVMLVIVLG FVASLLRLVD IRKELANQE
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