| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5874 |
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| Symbol | |
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| ID | 7380646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 886250 |
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| End bp | 887149 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649396 |
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| Product | ABC transporter membrane spanning protein (spermidine/putrescine) |
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| Protein accession | YP_002547633 |
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| Protein GI | 222106842 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATAATC AAGCCCTTAG CGAAACCGTC GTCGCAACAG CGGAACCTGC CGCCAAGCCG
TCGCGCATCT CCTTCTGGCT GGTGCTGCCG GGTGTCATCT GGATGCTGCT GTTCCTGGTG
CTGCCGATGT TGATGATGGT CTATGTGTCC TTCTGGACGC AGACCACCTT CACCATCAAG
CCGGTGTTGA CGCTGCAAAG CTGGATCACC TTCTTTTCCA GCGATACCTA TCTGGGCGCG
CTCTGGACCA CGGTCAGGAT CTGGCTGCTG GTGCTGGTAG CGACCTTGGC TGTCGGCTAT
CCGGCGGCGC TGTTTGTCGG GCTGTTCGTC AAAAACAAGA CGTTGCAAAC CGTGCTTCTG
GTGCTCTGCG TCATTCCGTT CTGGACCTCT TTCCTGATCC GCGTCCTCGC CTGGCGGCCA
ATGCTTGGCA AAGAAGGGGC GATCAACATG ATCCTGATGA AGCTTGGCAT TGTCAGCCAT
CCCATCGAAG TCCTGCTGTT TTCCGAACTG TCTGTGATCA TCGGCATGAC GCAGATCTAT
TGCGTGTTCA TGGTCGGTCC CATCGCCTTC ATGCTGGGAC GGATCGAGCC GGCAATCATC
GAGGCGGCGC AGGATCTCGG GGCCGGTTTC TGGCGGATCT TCCGCACCAT CATCCTGCCG
ATGTCGATGC CGGGCGTGGT GGTGGGCGCG ATCTTTGTCT CGGTCATGGT TCTCGGTGAA
TTCGCCACCT CGGCGGCACT GTCGGGCCGC AAGGTCAATC TGCTCGGCAA TATCATTGTT
ACCCAGGTGG GCTCTTTGAA ATGGGCTTTC GCGGCGGTGG CGGGCGTTGT GCTGACCCTG
CTGATGGGGC TGGTTGTCGC GGCGCTGCTG CGGGTCGTCG ATCTCAGGAA GGAGTTGTAG
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| Protein sequence | MHNQALSETV VATAEPAAKP SRISFWLVLP GVIWMLLFLV LPMLMMVYVS FWTQTTFTIK
PVLTLQSWIT FFSSDTYLGA LWTTVRIWLL VLVATLAVGY PAALFVGLFV KNKTLQTVLL
VLCVIPFWTS FLIRVLAWRP MLGKEGAINM ILMKLGIVSH PIEVLLFSEL SVIIGMTQIY
CVFMVGPIAF MLGRIEPAII EAAQDLGAGF WRIFRTIILP MSMPGVVVGA IFVSVMVLGE
FATSAALSGR KVNLLGNIIV TQVGSLKWAF AAVAGVVLTL LMGLVVAALL RVVDLRKEL
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