| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3637 |
|---|
| Symbol | |
|---|
| ID | 4075065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | + |
|---|
| Start bp | 694216 |
|---|
| End bp | 695085 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 638005157 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_611866 |
|---|
| Protein GI | 99078608 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.518454 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACCT CCGACGCCTC CCGTTTGGGG TTCTACCTGC TGCTCGCTCC GATCCTGTTG
TGGCTGGTGG TGCTGATCAT CCTGCCCCAT GTGGGGCTCT TTCTGGTGTC GATCAGCGAG
AAAGTGGGCC CGCGCGAGTA TGAAACCGGC TTTGGGAATT ACGCGGCGTT CTTTACCGAG
CCGCTCTATT GGCGCACCTT TGCTCGCACT GCGATCATGT CGATCCTTGC CACTGCGCTG
ACCTTGGTAC TTGGATTTCC AATCGCCTAC TACATTGCCA AGCTTACCCG CGGGCGCACT
AAAACAGTTC TGTTTCTGAT GTGCATGATC CCGTTCTGGG TCTCAGAGCT CGTGCGCACC
TTTGGCTGGA TGATCCTTTT GCGCGAAACG GGCGTGTTCT CCAATGCCCT GCAATCTCTT
GGTCTCGTGA GTGGCCCGGT CGAGATGCTC TACAATGATG CTGCAATCAT GGTGGGTCTC
GTCTACACGT CGATCCTTTT TATGGTTGTG CCACTTGTGA CAACGCTCGA CAGCCTCGAC
GACAGCCTGA TCGAAGCGGG ATATGATCTG GGGGGCACCA GCACCTCCAT CATGCGCGAG
ATCGTCATCC CTCACGCGAT GCCGGGGATC GTTTCAGGCT GTATCGTTGT GTTCATGCTT
TCGCTCGGAA ACTATCTCAC CCCGATCCTG CTGGGCGGGA AAGACAGCCT TTGGTTCACG
GGCATGATCT ACACGCAGTT CATTACCCGG TTTAACTGGG AGCTCGGTTC GGCCTTCGGC
TTCTTGCTGC TGGCGCTCTC GTCGCTGGTG GTTTTCCTTG GTCTCAAACT CTCGGGCCAG
ACTCTCTCTA AAACGATGGG GCGCTCATGA
|
|---|
| Protein sequence | MMTSDASRLG FYLLLAPILL WLVVLIILPH VGLFLVSISE KVGPREYETG FGNYAAFFTE
PLYWRTFART AIMSILATAL TLVLGFPIAY YIAKLTRGRT KTVLFLMCMI PFWVSELVRT
FGWMILLRET GVFSNALQSL GLVSGPVEML YNDAAIMVGL VYTSILFMVV PLVTTLDSLD
DSLIEAGYDL GGTSTSIMRE IVIPHAMPGI VSGCIVVFML SLGNYLTPIL LGGKDSLWFT
GMIYTQFITR FNWELGSAFG FLLLALSSLV VFLGLKLSGQ TLSKTMGRS
|
|---|
| |