| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bcen_6330 |
|---|
| Symbol | |
|---|
| ID | 4097355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia cenocepacia AU 1054 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008062 |
|---|
| Strand | + |
|---|
| Start bp | 945674 |
|---|
| End bp | 946600 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638019619 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_626166 |
|---|
| Protein GI | 107029071 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.508263 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGT TCAAGTCCCT GCTCGAGTGG CCGGTGCGGC GCTTCAACCT GACGGGCGCC
ACGGCGGTCG TGGCCGGGCC GTTCACGTGG CTCGTGCTGT TCTTCCTCGT GCCGTTCGTG
CTGGTCGTGA AGATCAGCTT CGCCGAGCTG CAGCTCGGTA TCCCGCCGTA TACGGAGCTC
GCGTCGTACG CGGACGGCGT CGTGCACATC GCGCTGAACC TGTCGCACTA CGCGTTCCTG
TTCACGGACA GCCTGTATTT CGCGACCTAC GTGAACTCGG TGTGGGTCGC CGCGATCACG
ACGCTGCTGT GCTTGCTGCT CGGCTATCCG ATGGCGTACT ACATCGCGCG CTCGAACCCG
GCCACCCGCA ACCTGCTGAT GATGGGCGTG ATGCTGCCGT TCTGGACGTC GTTCCTGATC
CGCGTGTATG CGTGGATCGG CATCCTGAAG AACAACGGGC TGCTGAACAA CTTCCTGATG
TGGATCGGGC TCACGCATAC GCCGATCGAG CTGTACCGCA CGAATTACGC GGTGTACATC
GGGATGGTGT ATTCGTACCT GCCGTTCCTC GTGATGCCGC TCTATGCGCA CCTCGTGAAG
ATGGACCTGC GCCTGCTCGA GGCTGCGTAC GACCTCGGCG CGAAGCCGTG GAAGGCGTTC
GTGCAGATCA CGCTGCCGCT GTCGAAGAAC GGCATCATCG CGGGCTGCCT GCTGGTGTTC
ATCCCGGCGG TCGGCGAGTA CGTGATTCCG GAGCTGCTCG GCGGCGCGAA TACGCTGATG
ATCGGCCGCG TGATGTGGAA CGAGTTCTTC AACAACGCGG ACTGGCCGAT GGCGTCTGCC
GTGACCTGCG CGATGGTGTT GCTGCTGCTC GTGCCGATGG CGATGTTCCA GCACTTCCAG
GCGAAGGAAC AGGGAGGCCG TCGATGA
|
|---|
| Protein sequence | MNAFKSLLEW PVRRFNLTGA TAVVAGPFTW LVLFFLVPFV LVVKISFAEL QLGIPPYTEL
ASYADGVVHI ALNLSHYAFL FTDSLYFATY VNSVWVAAIT TLLCLLLGYP MAYYIARSNP
ATRNLLMMGV MLPFWTSFLI RVYAWIGILK NNGLLNNFLM WIGLTHTPIE LYRTNYAVYI
GMVYSYLPFL VMPLYAHLVK MDLRLLEAAY DLGAKPWKAF VQITLPLSKN GIIAGCLLVF
IPAVGEYVIP ELLGGANTLM IGRVMWNEFF NNADWPMASA VTCAMVLLLL VPMAMFQHFQ
AKEQGGRR
|
|---|
| |