More than 300 homologs were found in PanDaTox collection
for query gene Smed_6341 on replicon NC_009622
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009620  Smed_4278  putative PAS/PAC sensor protein  70.37 
 
 
1027 aa  876    Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009622  Smed_6341  putative PAS/PAC sensor protein  100 
 
 
629 aa  1293    Sinorhizobium medicae WSM419  Bacteria  normal  0.433344  normal  0.230755 
 
 
-
 
NC_010505  Mrad2831_5709  MCP methyltransferase, CheR-type  48.19 
 
 
853 aa  463  1e-129  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.729466 
 
 
-
 
NC_011368  Rleg2_5237  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  46.53 
 
 
1324 aa  449  1e-125  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.395635 
 
 
-
 
NC_010511  M446_6211  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  43 
 
 
1061 aa  447  1.0000000000000001e-124  Methylobacterium sp. 4-46  Bacteria  normal  0.820077  normal  0.703655 
 
 
-
 
NC_011894  Mnod_3755  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  42.65 
 
 
1063 aa  435  1e-120  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007961  Nham_4605  MCP methyltransferase, CheR-type  39.04 
 
 
1092 aa  424  1e-117  Nitrobacter hamburgensis X14  Bacteria  normal  0.315944  n/a   
 
 
-
 
NC_010725  Mpop_1297  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  44.02 
 
 
1168 aa  416  9.999999999999999e-116  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_3739  MCP methyltransferase, CheR-type  40.26 
 
 
1045 aa  405  1.0000000000000001e-112  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_6264  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  41.24 
 
 
1163 aa  407  1.0000000000000001e-112  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_3377  signal transduction histidine kinase with CheB and CheR activity  40.13 
 
 
1242 aa  403  1e-111  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_3183  signal transduction histidine kinase  41.39 
 
 
1279 aa  400  9.999999999999999e-111  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1788  putative PAS/PAC sensor protein  41.09 
 
 
998 aa  402  9.999999999999999e-111  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_2045  CheB methylesterase:MCP methyltransferase, CheR-type  41.65 
 
 
868 aa  398  1e-109  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_0372  signal transduction histidine kinase with CheB and CheR activity  42.22 
 
 
1233 aa  398  1e-109  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6399  signal transduction histidine kinase with CheB and CheR activity  41.43 
 
 
1361 aa  396  1e-109  Burkholderia phymatum STM815  Bacteria  normal  0.191888  normal 
 
 
-
 
NC_007348  Reut_B4915  PAS  42.39 
 
 
1384 aa  394  1e-108  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4422  signal transduction histidine kinase with CheB and CheR activity  40.15 
 
 
1274 aa  383  1e-105  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.381764  normal 
 
 
-
 
NC_013173  Dbac_2162  MCP methyltransferase/methylesterase, CheR/CheB  39.16 
 
 
879 aa  383  1e-105  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0707  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  41.4 
 
 
1190 aa  385  1e-105  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_1703  signal transduction histidine kinase with CheB and CheR activity  41.2 
 
 
1408 aa  382  1e-104  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.433463  normal 
 
 
-
 
NC_009712  Mboo_0327  putative PAS/PAC sensor protein  38.56 
 
 
1008 aa  377  1e-103  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_013037  Dfer_5571  signal transduction histidine kinase with CheB and CheR activity  38.72 
 
 
1218 aa  377  1e-103  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.273526  normal 
 
 
-
 
NC_010803  Clim_1600  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  38.31 
 
 
1000 aa  374  1e-102  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A2183  hypothetical protein  38.75 
 
 
980 aa  375  1e-102  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.850093 
 
 
-
 
NC_007517  Gmet_0780  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  38.6 
 
 
887 aa  374  1e-102  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5176  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  40.15 
 
 
1404 aa  373  1e-102  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.190634 
 
 
-
 
NC_011832  Mpal_2460  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  41.2 
 
 
971 aa  375  1e-102  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_011060  Ppha_1653  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  38.42 
 
 
993 aa  372  1e-102  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0229  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  38.88 
 
 
1138 aa  370  1e-101  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2355  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  41.27 
 
 
1008 aa  370  1e-101  Rhodoferax ferrireducens T118  Bacteria  normal  0.71741  n/a   
 
 
-
 
NC_007908  Rfer_3013  MCP methyltransferase, CheR-type  40.7 
 
 
877 aa  371  1e-101  Rhodoferax ferrireducens T118  Bacteria  normal  0.404945  n/a   
 
 
-
 
NC_008752  Aave_2417  signal transduction histidine kinase with CheB and CheR activity  40.14 
 
 
1535 aa  367  1e-100  Acidovorax citrulli AAC00-1  Bacteria  normal  0.117494  normal 
 
 
-
 
NC_009621  Smed_5776  putative PAS/PAC sensor protein  39.37 
 
 
1160 aa  363  6e-99  Sinorhizobium medicae WSM419  Bacteria  normal  0.491611  normal  0.0137055 
 
 
-
 
NC_007413  Ava_0314  Signal transduction histidine kinase (STHK) with CheB and CheR activity  38.05 
 
 
1399 aa  362  1e-98  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_3193  signal transduction histidine kinase with CheB and CheR activity  39.56 
 
 
1380 aa  362  1e-98  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.112764 
 
 
-
 
NC_007514  Cag_0563  putative PAS/PAC sensor protein  38.29 
 
 
1035 aa  358  1.9999999999999998e-97  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_3018  signal transduction histidine kinase with CheB and CheR activity  38.14 
 
 
1371 aa  357  5e-97  Pseudomonas putida GB-1  Bacteria  normal  normal  0.980757 
 
 
-
 
NC_010580  Bind_3835  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  39.35 
 
 
1167 aa  352  1e-95  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1118  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  37.87 
 
 
852 aa  351  3e-95  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.742809 
 
 
-
 
NC_014248  Aazo_2376  signal transduction histidine kinase with CheB and CheR activity  37.08 
 
 
1407 aa  348  2e-94  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_2549  fused CheR-type MCP methyltransferase and PAS sensor protein  36.99 
 
 
1006 aa  347  3e-94  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_1601  CheB methylesterase, CheR methyltransferase, hybrid histidine kinase  37.29 
 
 
1222 aa  345  1e-93  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.472526  n/a   
 
 
-
 
NC_008789  Hhal_1716  MCP methyltransferase, CheR-type  38.48 
 
 
856 aa  343  5.999999999999999e-93  Halorhodospira halophila SL1  Bacteria  normal  0.92135  n/a   
 
 
-
 
NC_008789  Hhal_0370  protein-glutamate O-methyltransferase  38 
 
 
639 aa  336  7e-91  Halorhodospira halophila SL1  Bacteria  normal  0.181962  n/a   
 
 
-
 
NC_008709  Ping_1840  MCP methyltransferase, CheR-type  35.66 
 
 
840 aa  335  2e-90  Psychromonas ingrahamii 37  Bacteria  normal  0.59391  normal  0.603716 
 
 
-
 
NC_008709  Ping_3128  MCP methyltransferase, CheR-type  36.62 
 
 
840 aa  332  9e-90  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA1246  methyltransferase CheR, putative  38.43 
 
 
1378 aa  325  1e-87  Methylococcus capsulatus str. Bath  Bacteria  normal  0.271052  n/a   
 
 
-
 
NC_013440  Hoch_3278  signal transduction histidine kinase with CheB and CheR activity  37.09 
 
 
2468 aa  323  5e-87  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0267066 
 
 
-
 
NC_007643  Rru_A1500  Signal transduction histidine kinase (STHK) with CheB and CheR activity  35.55 
 
 
1483 aa  320  3e-86  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007953  Bxe_C0521  multi sensor hybrid histidine kinase  38.33 
 
 
1344 aa  319  1e-85  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0310  MCP methyltransferase, CheR-type  38.26 
 
 
1149 aa  318  2e-85  Methylobacterium populi BJ001  Bacteria  normal  0.512157  normal 
 
 
-
 
NC_007952  Bxe_B1520  signal transduction histidine kinase (STHK) with CheB and CheR activity  37.96 
 
 
1303 aa  316  9e-85  Burkholderia xenovorans LB400  Bacteria  normal  0.124967  normal 
 
 
-
 
NC_009467  Acry_3169  signal transduction histidine kinase with CheB and CheR activity  37.24 
 
 
1445 aa  311  2e-83  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1410  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  33.82 
 
 
1120 aa  307  3e-82  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.132886  n/a   
 
 
-
 
NC_008609  Ppro_3165  signal transduction histidine kinase with CheB and CheR activity  34.84 
 
 
1306 aa  305  1.0000000000000001e-81  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0673  signal transduction histidine kinase with CheB and CheR activity  34.19 
 
 
1215 aa  303  4.0000000000000003e-81  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2975  diguanylate cyclase with PAS/PAC sensor  34.38 
 
 
1084 aa  300  8e-80  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4430  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  38.19 
 
 
1158 aa  299  8e-80  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_5252  signal transduction histidine kinase with CheB and CheR activity  36.17 
 
 
1698 aa  295  2e-78  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3102  signal transduction histidine kinase with CheB and CheR activity  36 
 
 
1418 aa  291  2e-77  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_1404  signal transduction histidine kinase with CheB and CheR activity  36.83 
 
 
1759 aa  287  5e-76  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_3046  hypothetical protein  33.77 
 
 
1010 aa  286  7e-76  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00164382 
 
 
-
 
NC_013440  Hoch_3250  signal transduction histidine kinase with CheB and CheR activity  34.17 
 
 
1348 aa  286  7e-76  Haliangium ochraceum DSM 14365  Bacteria  normal  0.534329  normal  0.0270765 
 
 
-
 
NC_013440  Hoch_4639  signal transduction histidine kinase with CheB and CheR activity  34.46 
 
 
1453 aa  282  1e-74  Haliangium ochraceum DSM 14365  Bacteria  normal  0.432269  normal 
 
 
-
 
NC_010508  Bcenmc03_1302  signal transduction histidine kinase with CheB and CheR activity  33.58 
 
 
1220 aa  283  1e-74  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.772751 
 
 
-
 
NC_010086  Bmul_4696  signal transduction histidine kinase with CheB and CheR activity  34.18 
 
 
1214 aa  282  2e-74  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_12648  Signal Transduction Histidine Kinase (STHK) with CheB and CheRactivity  31.12 
 
 
1200 aa  279  1e-73  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_0399  MCP methyltransferase, CheR-type  30.92 
 
 
820 aa  277  4e-73  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_013061  Phep_3913  PAS sensor protein  32.96 
 
 
1337 aa  273  5.000000000000001e-72  Pedobacter heparinus DSM 2366  Bacteria  normal  0.290527  normal  0.28306 
 
 
-
 
NC_008751  Dvul_2487  signal transduction histidine kinase with CheB and CheR activity  34.4 
 
 
1535 aa  273  9e-72  Desulfovibrio vulgaris DP4  Bacteria  normal  0.162467  normal  0.455724 
 
 
-
 
NC_009428  Rsph17025_2264  putative PAS/PAC sensor protein  33.58 
 
 
1165 aa  270  5.9999999999999995e-71  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.620072  normal  0.0600346 
 
 
-
 
NC_010814  Glov_0566  MCP methyltransferase, CheR-type with PAS/PAC sensor  33.96 
 
 
1193 aa  266  8.999999999999999e-70  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_2229  methylesterase CheB/methylase CheR  32.83 
 
 
1170 aa  262  1e-68  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.840236  n/a   
 
 
-
 
NC_009049  Rsph17029_0905  putative PAS/PAC sensor protein  32.83 
 
 
1170 aa  262  1e-68  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.968727 
 
 
-
 
NC_013730  Slin_1989  MCP methyltransferase, CheR-type with PAS/PAC sensor  31.59 
 
 
1110 aa  261  3e-68  Spirosoma linguale DSM 74  Bacteria  normal  0.175442  normal  0.013335 
 
 
-
 
NC_013132  Cpin_7206  signal transduction histidine kinase with CheB and CheR activity  30.48 
 
 
1499 aa  252  2e-65  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_1237  chemotaxis response regulator (methyltransferase)  32.59 
 
 
1618 aa  241  2e-62  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3640  MCP methyltransferase, CheR-type with PAS/PAC sensor  32.24 
 
 
1303 aa  235  2.0000000000000002e-60  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.581797 
 
 
-
 
NC_007802  Jann_2564  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  31.61 
 
 
1089 aa  227  5.0000000000000005e-58  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_1028  signal transduction histidine kinase with CheB and CheR activity  29.85 
 
 
1248 aa  218  2.9999999999999998e-55  Ruegeria sp. TM1040  Bacteria  normal  normal  0.507304 
 
 
-
 
NC_010717  PXO_03023  methyltransferase  44.83 
 
 
604 aa  212  1e-53  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.361036  n/a   
 
 
-
 
NC_008044  TM1040_0460  MCP methyltransferase, CheR-type  32.02 
 
 
837 aa  211  3e-53  Ruegeria sp. TM1040  Bacteria  normal  0.604812  normal 
 
 
-
 
NC_008044  TM1040_2227  MCP methyltransferase, CheR-type  32.62 
 
 
824 aa  201  1.9999999999999998e-50  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3427  MCP methyltransferase, CheR-type with PAS/PAC sensor  31.09 
 
 
2031 aa  199  2.0000000000000003e-49  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0889636 
 
 
-
 
NC_014248  Aazo_0227  MCP methyltransferase  30.21 
 
 
631 aa  194  3e-48  'Nostoc azollae' 0708  Bacteria  normal  0.993793  n/a   
 
 
-
 
NC_007348  Reut_B5191  CheB methylesterase:MCP methyltransferase, CheR-type  28.19 
 
 
813 aa  193  1e-47  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_5175  MCP methyltransferase, CheR-type  26.93 
 
 
823 aa  187  5e-46  Burkholderia phymatum STM815  Bacteria  normal  normal  0.367936 
 
 
-
 
NC_011729  PCC7424_0433  MCP methyltransferase, CheR-type with PAS/PAC sensor  33.47 
 
 
618 aa  185  2.0000000000000003e-45  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_3121  MCP methyltransferase, CheR-type with PAS/PAC sensor  31.63 
 
 
617 aa  177  4e-43  Cyanothece sp. PCC 7425  Bacteria  normal  0.0152355  normal  0.805919 
 
 
-
 
NC_008576  Mmc1_3393  putative PAS/PAC sensor protein  42.64 
 
 
545 aa  152  1e-35  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3390  MCP methyltransferase, CheR-type  31.75 
 
 
617 aa  141  3e-32  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0801  MCP methyltransferase, CheR-type  38.36 
 
 
259 aa  106  1e-21  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.507771  normal 
 
 
-
 
NC_012918  GM21_1720  MCP methyltransferase, CheR-type  37.65 
 
 
278 aa  103  1e-20  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000122266 
 
 
-
 
NC_008255  CHU_2079  MCP methyltransferase, CheR-type  33.71 
 
 
280 aa  101  3e-20  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.166097 
 
 
-
 
NC_008709  Ping_3720  CheR-type protein glutamate methyltransferase  38.12 
 
 
281 aa  101  4e-20  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013456  VEA_004174  chemotaxis protein methyltransferase CheR  38.26 
 
 
275 aa  101  4e-20  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A0983  chemotaxis protein methyltransferase  32.28 
 
 
302 aa  100  6e-20  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_009831  Ssed_1647  protein-glutamate O-methyltransferase  33.78 
 
 
279 aa  100  7e-20  Shewanella sediminis HAW-EB3  Bacteria  normal  0.957871  normal 
 
 
-
 
NC_009135  MmarC5_0737  protein-glutamate O-methyltransferase  33.33 
 
 
270 aa  100  8e-20  Methanococcus maripaludis C5  Archaea  normal  0.730545  n/a   
 
 
-
 
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