| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3913 |
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| Symbol | |
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| ID | 8255047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4705711 |
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| End bp | 4709724 |
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| Gene Length | 4014 bp |
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| Protein Length | 1337 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644937577 |
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| Product | PAS sensor protein |
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| Protein accession | YP_003094166 |
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| Protein GI | 255533794 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.290527 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.28306 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGCTG AACATAAGGA AAAATATATA GTTGCAATCG GTGCATCGGC AGGTGGACTG
GAAGCCATAC ATGAGTTTTT TGACCATATG CCACAAAGCT CAAATTTTTC TTTTGTGGTC
ATCCAGCACC TTTCTTCCGA TTACAAAAGC CTGCTCGTTG AACTGGTGGC CAAGCATACC
AATATGAAGG TGATTGAAGC CGCGAATGAT ATGCTGATTG AACCGGACTG TGTATACATC
ATTCCCAACA ATAAGCTGAT GACCGTAAAG CGGGGGAAGC TTAAACTGGC AGATAAATCG
CTGATAAAAG CCCCGAACAC CGCCATAGAC ACTTTTCTGC ATACCCTTGC CGAGGACAAA
AAGGAAAAGG CAATTGCCAT CATTTTATCT GGTACCGGTA CAGACGGTAC CAGGGGCATA
CAAAGCATTA AAGCATGTGG TGGAATGGTA ATGGTGCAGG ATCCTGAAAC GGCCAAATTT
GATGGAATGC CCAACAGTGC AATTTCTTCG GGTAATGCAG ATTTTATATT GCCGGCAAAA
AAGATGTACC AGGAATTGTT CAATTATATC AAAGAAGAAC CATTACTGCT GGAAGAAGAC
AAGATGGATG AAAAATTGCT GGATCAAATT TTCAATATGG TGCACCGGCA AAGTGGCAAC
GATTTTAATT TGTACAAAAC GCCCACCATT ATCCGCCGGA TTGGACGAAG AATGAATGAG
ACCAGGATAA AGCGGTTGGA GGATTATGTG AAATACCTGG CATCGGATAA GGAAGAGGTT
AAAATACTGG CCAAAGATTT TCTGATCGGG GTAACCAAAT TTTTCAGGGA TCATCAGGCT
TATGAATTGC TGGCAGAAAA AATATTTCCC GATCTGATTC ATGCAAAAAC TGAAAACGAC
CTGGTAAAGG TATGGGTATG TGCATGCAGT ACCGGTCAGG AGGCCTATTC TATAGCCGTA
TTGCTGAATG AATGTGTAGA GCAGTCGGGT AAAAAACTGG ACATTAAAGT TTTTGCTACC
GACATTGATG AAAAAAGCAT TGAAATTGCA TCGGCCAACA AATATCCGGA ATCGATCATT
AAGGAAATCC CCCCGGATTT GTTCCGCAAG TATTTTGTAA AGGATGGTAA ATTTTACGGG
GTGATTCCCC AAATCCGGAA ACAGGTGGTA TTTGCGAAGC ACGATGTGAT TAAATCGCCC
CCTTTTATAA AGAATGATAT GGTAACCTGC CGCAACATGC TGATTTATGT GAATGGCATA
TTGCAGGAAA AAATCTTATC AACCTTTCAT TTTTCCCTAA ACAGAGATGG TTACCTGTTC
CTCGGATCGA GTGAAACCGC ATCTGTGCTG AAGGAGGGCC TCAGAGAGAT TTCGGGTAAA
TGGAAGGTGT ACCAGAAGTC GGGGCCAATC AATTATTCAA ATTACAATAC CTATAGCACG
GGTGGCAGGA TCCTGGAGCA GAAGGCTAAA AAAGAGAAAT CCATTGCTGA TGTTCCGCTT
ACAGCAGCAG AAAAGAGTTT CAATAAATTT ATTACCAATG ATCTTGGCTA TGTTGGAATA
TTTATCGACA AAGCCTATAT CATACAGGAT GCTGTAGGAA ATTACAGGCA GTTTCTGTCT
TTACCGGATG ATAAGATAGA GCTCAACCTG TTGAAAATGG TACCGAGAGA GATTTCTATT
GTTTTGAACA GCGCCCTGCG AAAGTCATGG AAGGAAAATA AAAATACACA CCTGAAACGG
ATCCGCTTTA AGCGTAAGGA GGATGATGTA TATCTGAACA TTTCTATCAG GCCCCCAGAA
ATACATCAAG GCAATGATTA CACCATGATT GTATTTGGTG AAAGTACCAT GGAGGTAATT
CCGGACAAAG AAGACCTGGT GATGTCGCTC CTGTCCAATG ACCAGCAAAA TGAATATGTA
TTTGAACTGG AGGCTGAACT AAACGAGACG CGCAGCAATC TGCAGCTCGC AGTGGAGGAA
ATGGAAACCA CCAATGAGGA GTTGCAGTCG AGCAATGAGG AGCTGTTGTC TGCAAATGAG
GAGCTGCAGT CGGGAAATGA AGAACTGCAA TCGCTGAATG AGGAATTGCA CACCTTAAAT
ACGGAACATC AGGTGAAAAT CAGAGAATTG GTAGAGCTGA ACGATGACCT TGACAATTAT
TTCCGGAGTA CGGATATTGG TCAGGTTTTT TTAGACGGTA ATTTATACAT CCGGAAATTT
AACCCAGCAG CTGTAAGTAT GGTAAACCTG ATTGATGCAG ATATTGGCAG GTCGATTGAC
CATATTTCGA ATAACATTAA GGCCGAAAAC CTGTCTGAAG ATATCCGCTC GGTTCTGCTT
ACCGGCAGGA CATTGGAAAA GGAAGTGCAG TTAAAAAATG GTAACCGCAG TTTGATGCGC
ATACTGCCTT ACCTGCGCAA GGACAGAAAA ACAGATGGCG TTGTGATTAC TTTCGTGGAT
GTATCGCACA TTACTGAATT GAACAACATC ATCTCCGGCG TTTTTAATGC AAGTTTAAAT
GCGGTAATGG CTTTTACAGC CGTCAGGAAC CAGGAATATT TTATCGTGGA TTTTAAGTGC
GTTGCCTTTA ATGATGTAGC ACTTGCTTTT CTGGGTAAGA AAAAAGACGA ACTGTACAAC
GCGATGCTGG TGAAACAGTT ACCTGAACTT GCAGAAGGTA ACCTGTTTGG CAGATATACC
AGTGTGGTAG AGAAAGGCAG TTCTTTACAG ACTGAATTTC AGTTGATGAA CAAAAGGTGG
TTCCAATTGG TGGCCGTAAA AATGTCTGAT GGGTTTGCCG CAACCTTAAC CGACATTACC
GACCGTAAAC GGGCCGATCA GCGACTGAAG AAAAATTATA ATGAACTGAT TGCAGTGCGG
GAAAATCTGA AGCTGTTGAA CGTAGAGCTG GAAGAAAAGG TAAGACAGCG TACAAAAGAG
TTGACGGCCA GCGAGAACCG CTTTAACGAG GTTGCCAAGG CCACCAATGA TACCATATGG
GACTGGAGCC TGGTGAATAA TAACATGTGG AGAAGTGAAA ACCTCAATGT GATGTTTGGT
TATTCGAATT CGGATGAAAA TAGCAATATT GGATTTTGGT TTGATAAAAT TCATCCGGAA
GACCGAAAAA GGGTGCAGGA TAGTGTTTAC GAGGCCATTA ACAACAACGA AAAACAGTGG
TCGGCAGAGT ATCGGGTGTT AAAGGCCAAT GGGGAATATG CCATTATTTT TGACCGGGGC
AGTATTTTAC ACGATGACTT TAATACACCT TACCGGATGG TGGGCTCTAT GGTAGACATT
ACCAAAACAA ATGAACTGCA AAAAGAACTC ATGGAAAAGA AAGACGAATT TATGAGTATT
GCAAGCCATG AGCTGAAAAC GCCGATTACC AGTATTAAAG GGTTTTTACA GCTGACCAAA
CGGGCAGCAG CAAAAGGTAC GGCCGACCGC GACATGCTCA TTTACATTGA CAAGGCCAAC
CGGCAGCTGG AGAATTTAAC ATTTCTGGTA AATGACCTGC TGGATGTATC CAAAATCCAG
GCTGGAAAGA TGCAATTCAA TTACAGCGAG TTTAATATAC GTAAACTGAT AGCAGAATGC
GTGGATGATA TGCAGAATAC TGAGGGATAT GAAATTAGCC TTAAACATAC AGACGATATC
GATATTTATG CCGATCAGCA CAGAATTGAA CAGGTGATCA AAAATTTTCT GTCGAATGCC
ATCAAGTATT CGCCTGACAA TAAGGTGGTG ATTGTGTATA CTAAGTTGAT GGGTAAGGAG
ATACGGGTAT GTGTGCAGGA TTTTGGGATC GGTATAGCAC CGGATAAGGC AAAATTGGTG
TTCGACAGGT TCTTTAGGGT AGATCATGTC AATTACCAGT TTTCGGGGCT CGGACTGGGG
TTATACATTT GTGCCGAGAT CGTAACCCGT CATGGGGGAA CCATCGGCGT GCAAAGTGAG
GAAGGTAAGG GATCAGAATT CTGGTTCCAG ATTCCACTGA AACCGAAACA CTAA
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| Protein sequence | MMAEHKEKYI VAIGASAGGL EAIHEFFDHM PQSSNFSFVV IQHLSSDYKS LLVELVAKHT
NMKVIEAAND MLIEPDCVYI IPNNKLMTVK RGKLKLADKS LIKAPNTAID TFLHTLAEDK
KEKAIAIILS GTGTDGTRGI QSIKACGGMV MVQDPETAKF DGMPNSAISS GNADFILPAK
KMYQELFNYI KEEPLLLEED KMDEKLLDQI FNMVHRQSGN DFNLYKTPTI IRRIGRRMNE
TRIKRLEDYV KYLASDKEEV KILAKDFLIG VTKFFRDHQA YELLAEKIFP DLIHAKTEND
LVKVWVCACS TGQEAYSIAV LLNECVEQSG KKLDIKVFAT DIDEKSIEIA SANKYPESII
KEIPPDLFRK YFVKDGKFYG VIPQIRKQVV FAKHDVIKSP PFIKNDMVTC RNMLIYVNGI
LQEKILSTFH FSLNRDGYLF LGSSETASVL KEGLREISGK WKVYQKSGPI NYSNYNTYST
GGRILEQKAK KEKSIADVPL TAAEKSFNKF ITNDLGYVGI FIDKAYIIQD AVGNYRQFLS
LPDDKIELNL LKMVPREISI VLNSALRKSW KENKNTHLKR IRFKRKEDDV YLNISIRPPE
IHQGNDYTMI VFGESTMEVI PDKEDLVMSL LSNDQQNEYV FELEAELNET RSNLQLAVEE
METTNEELQS SNEELLSANE ELQSGNEELQ SLNEELHTLN TEHQVKIREL VELNDDLDNY
FRSTDIGQVF LDGNLYIRKF NPAAVSMVNL IDADIGRSID HISNNIKAEN LSEDIRSVLL
TGRTLEKEVQ LKNGNRSLMR ILPYLRKDRK TDGVVITFVD VSHITELNNI ISGVFNASLN
AVMAFTAVRN QEYFIVDFKC VAFNDVALAF LGKKKDELYN AMLVKQLPEL AEGNLFGRYT
SVVEKGSSLQ TEFQLMNKRW FQLVAVKMSD GFAATLTDIT DRKRADQRLK KNYNELIAVR
ENLKLLNVEL EEKVRQRTKE LTASENRFNE VAKATNDTIW DWSLVNNNMW RSENLNVMFG
YSNSDENSNI GFWFDKIHPE DRKRVQDSVY EAINNNEKQW SAEYRVLKAN GEYAIIFDRG
SILHDDFNTP YRMVGSMVDI TKTNELQKEL MEKKDEFMSI ASHELKTPIT SIKGFLQLTK
RAAAKGTADR DMLIYIDKAN RQLENLTFLV NDLLDVSKIQ AGKMQFNYSE FNIRKLIAEC
VDDMQNTEGY EISLKHTDDI DIYADQHRIE QVIKNFLSNA IKYSPDNKVV IVYTKLMGKE
IRVCVQDFGI GIAPDKAKLV FDRFFRVDHV NYQFSGLGLG LYICAEIVTR HGGTIGVQSE
EGKGSEFWFQ IPLKPKH
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