| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4278 |
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| Symbol | |
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| ID | 5319040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009620 |
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| Strand | + |
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| Start bp | 767954 |
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| End bp | 771037 |
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| Gene Length | 3084 bp |
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| Protein Length | 1027 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640776083 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001313016 |
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| Protein GI | 150376420 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins
[COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
[COG3920] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATACG AAGATAACAG ATTCCCGATT GTTGGCATCG GCGCGTCGGC CGGTGGTATT
CCTGCAATGC AGGGGTTCTT CAAGGGTCTT CCGGTCAATT CCAACATGGC CTTCGTGATC
GTGACGCATC TCAGCCCCGA GCATGAGAGC CAACTTCACG AGGTGGTCGC GCGCTACACA
GACTTGCCGG TGTTGGTGGC GGAGGATGGG ATGGCGGCCC AGCCAAATCA TGTCTATGTC
ATGCCGCAGA ATGCCATCCT CTCGATCGCA GGCGGGCACT TGCGTCTGCG CAAGCCCGAC
GCCGCCACGC GGGAGCGCAA GCCGATCGAT ATCTTTCTGA GCACGCTGGC GGAAGATCAA
GGCGAGCAGG CGGTCGGTAT CATTCTTTCC GGCGGCGACA GCGATGGAAC GCTGGGGGCG
AAGGCGATCA AGGAGCATGG AGGGCTGACA CTCGCGCAGG CGAGCGACGG GTCAGGTCCG
CGTAACCCGG ACATGCCGCA AAGCGCAATC TCCAGCGGCG TGATCGACCT GGCGGTTACA
GCCGAAGAGA TGGGCGAGAA GCTTATCGCC TATGCCAACG GTTTCATGGC TGCCCAAGAC
GTTGCGACAG AGGAGACGCC CGACGCCCGG GAAGCTCGCT CGGAGATCTA TGGACTTCTC
CGCAGGCATT CGGGACATGA TTTCTCAGGG TATAAATCAA AAACGTTTCT ACGCCGCGTA
AGAAGACGCA TGCAGATTCT TCAGGTTCGA GCGCTGCCGG ATTACTTGAA GCTGCTCAGG
CGCGACCCCT CAGAGGTGAC GAACCTCTTC CGCGACCTAT TGATCAACGT CACCAATTTC
TTCCGCGACC AGGATGCGTT CAAGGCACTT GAGCAACTGG TGATACCGCG CCTGTTCGAA
GGCCGAAAAG CGGGCGAGCC CGTGCGTGTA TGGGTTCCAG GCTGCGCGAC GGGGGAAGAA
GTCTATTCCC TTGGCATCCT CATGCGCGAA CGCATGGAGA AGCTGGCGGA CATGCCGCGG
GTTCAGATTT TCGCCACAGA CATTGATGAA TCCGCTCTCG GTGTCGCCCG GGCCGGCCGT
TACCCTGAAG CGCTGCTGCA AGGCCTGTCA CCTGAGCGCA TAGCAAGACA CTTCAATTGC
GACGGCGCCA GCTTCGTGAT CAGCAGTGAT GTGCGCGAGC TCTGCATCTT CTCCCCGCAT
AGCGTTACGC GCGATCCGCC GTTCTCGCGC ATGGATCTGG TATCCTGCCG CAATCTGCTG
ATCTATCTGG ATCAAGAGAC GCAGAAACGC GTCATCTCCA CATTCCATTA TGCGCTGAAG
CCGGGTGGCT ATCTTTTTCT CGGGACGTCC GAGAGTATCG GTCAGCACGG GGAGCATTTC
TCGACCATTG ACAAGAAGAA TCGCATTTTC CAGGCGCGGG GGCATGATGC AGTGCCCCGT
GTTCCAGCCC TCGTTGGTCC TCCCAAAACG GTGAACACTG CCGATGGCCG TATCCACGGT
CTCAGGATCG GCACCTATCC GCTGCGGCAG GTGGTCGAAG CGCATGTTCT CGAGCGCTTT
GCCCCCGCGC ATGTCGTCGT CAACGCCGAC GGCGAGGCGG TCTACTACTC CGCTCGCACG
GGAAAATACC TCGAAGTTCC CCAGGGCGCC CCGAGCCGGC AGATTCTTAC GACTGCAAGA
CGGGGCCTGC GGCTCGACTT GCGGGCGGCG CTGCGCGAGG CCGCCTCGGC ACGAAAAGTT
GTGGTACGCG AAAATGCTTT GCTGGAGGAC GACGACGATC GGGTGCAACG GGTTAATCTA
ACCGTCGAGC CATTGGCGGA CGGCGCCGGT GGCGAGCCTC TTTATCTGGT CGTGTTCGAT
CCCATCGGGC CTCTACAAAG CCGGGCGGAG GCCGAGCATT CCGGATATGA CGCGGATACG
GCGGCTATCC TGGAGAGTGA GCTTCGCGAG ACGCGCGAGC GACTGCAATC CACCATCGAA
GAATACGAGA CGGCTCTTGA AGAGCTCAAG TCCTCTCACG AAGAGCTTGT TTCCGTCAAC
GAGGAGGCGC AGTCAACCAA TGAGGAGCTG GAAGCCTCCA AGGAGGAAAT GCAGTCGCTC
AACGAGGAAC TGAGCACGAT CAATGCGGAA CTGACCGCAA AGGTCGAGGA ACTGGACCGT
GCGAACAGCG ACCTGAAGAA CCTGTTCGAG AGCATGCAGA TCGCAACGGT GTTTCTCGAC
CGCAACCTCG TTATCCGCAA TTTCACACCG GCTGCCTCTT CGTTCTTCAA CATCCGGCCG
TCCGACGTGG GGCGGCCCCT TACCGAGCTT TCAAGCAAGC TCGACTATCC GGAACTCAAG
GAACAGATCG CTTCGGTCTT CAAGACCGGA GAAGCCGTGG AACACCATCT TGCCCGCGAT
CAGAACGGAA AGCACTTTCT TGTACGCCTG ATCCCCTATC GCGACGACGC AGCACGCGTC
GATGGTGTCG TGGTCACGCT TGTCGATGTG ACGAAGATGG CCGAGGCCGA GGCGCACCAG
CAGATGCTGG TCTCGGAACT CAATCACCGG GTCAAGAACA TGCTTGCAGT GGTGATCAGC
ATCGCCAATC ATAGCATGCA GACCGCCCGG TCACCGAACG AGTTCAATCA GGCGCTGATC
GGCCGTCTGC AGGCGATGGG GCGGGCTTAT GGACTGTTGA CCGAGACGCA CTGGACCGCT
GCTCCCGTCG ATCACCTCAT CAGGCAGGAA ATCGAAGCCT TCGGCACAGG TCGCTTCGAA
GTGAACGGGC CTGACATCCA CCTCGAACCT CAACAGGGGC TTTCTATAGG CATGGTCATA
CACGAACTGG CGACCAATGC GTCTAAATAC GGAGCCCTGA GCAAATCCGA GGGGAAGGTA
CTGGTTGGCT GGCAATCGGC GAATGGCGTC TTCCGACTCA CCTGGCAGGA AAGTGACGGT
CCGCCGGTGA GTGAACCGGA GCGGGAGGGC TTCGGCCTGT CTCTGCTCAA AGGAGAAATA
GGCTACAGGC TCGATGGCGA GGTGGAAACG TTCTTCCGTC CGGAAGGTCT GTTCGTGCGC
ATAGCTTTTC CGTTCGAAAG GTAG
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| Protein sequence | MTYEDNRFPI VGIGASAGGI PAMQGFFKGL PVNSNMAFVI VTHLSPEHES QLHEVVARYT
DLPVLVAEDG MAAQPNHVYV MPQNAILSIA GGHLRLRKPD AATRERKPID IFLSTLAEDQ
GEQAVGIILS GGDSDGTLGA KAIKEHGGLT LAQASDGSGP RNPDMPQSAI SSGVIDLAVT
AEEMGEKLIA YANGFMAAQD VATEETPDAR EARSEIYGLL RRHSGHDFSG YKSKTFLRRV
RRRMQILQVR ALPDYLKLLR RDPSEVTNLF RDLLINVTNF FRDQDAFKAL EQLVIPRLFE
GRKAGEPVRV WVPGCATGEE VYSLGILMRE RMEKLADMPR VQIFATDIDE SALGVARAGR
YPEALLQGLS PERIARHFNC DGASFVISSD VRELCIFSPH SVTRDPPFSR MDLVSCRNLL
IYLDQETQKR VISTFHYALK PGGYLFLGTS ESIGQHGEHF STIDKKNRIF QARGHDAVPR
VPALVGPPKT VNTADGRIHG LRIGTYPLRQ VVEAHVLERF APAHVVVNAD GEAVYYSART
GKYLEVPQGA PSRQILTTAR RGLRLDLRAA LREAASARKV VVRENALLED DDDRVQRVNL
TVEPLADGAG GEPLYLVVFD PIGPLQSRAE AEHSGYDADT AAILESELRE TRERLQSTIE
EYETALEELK SSHEELVSVN EEAQSTNEEL EASKEEMQSL NEELSTINAE LTAKVEELDR
ANSDLKNLFE SMQIATVFLD RNLVIRNFTP AASSFFNIRP SDVGRPLTEL SSKLDYPELK
EQIASVFKTG EAVEHHLARD QNGKHFLVRL IPYRDDAARV DGVVVTLVDV TKMAEAEAHQ
QMLVSELNHR VKNMLAVVIS IANHSMQTAR SPNEFNQALI GRLQAMGRAY GLLTETHWTA
APVDHLIRQE IEAFGTGRFE VNGPDIHLEP QQGLSIGMVI HELATNASKY GALSKSEGKV
LVGWQSANGV FRLTWQESDG PPVSEPEREG FGLSLLKGEI GYRLDGEVET FFRPEGLFVR
IAFPFER
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