Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1028 |
Symbol | |
ID | 4078540 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1103990 |
End bp | 1107736 |
Gene Length | 3747 bp |
Protein Length | 1248 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638006332 |
Product | signal transduction histidine kinase with CheB and CheR activity |
Protein accession | YP_613023 |
Protein GI | 99080869 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase [COG1352] Methylase of chemotaxis methyl-accepting proteins [COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.507304 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGAAA ACAACATCTC GCCGCTACAC CCTGCGCAAA CCGGGGCGCA CCGCAAGATC GGCAAGGTCG ATGAGCGGTT CTACATTGTT GGTGTCGGGG CCTCTGCCGG GGGGCTTGAT GCCATCAAGC AGCTTCTGGC GCGTGTGCCT GTGGATTTTG CGCATAGTTT CGTGGTCGTT CAGCACCTGT CGCCGGACTA CAAATCCGTG ATGACTGAAA TCCTCGGGCG AGAGACGCAG CACAAGGTTG TCGAGGTGTC CGACAACATG CGCGTCGAGC CAAAGCATAT CTATGTCATC CCACCGGGGG CCAATATCGT CATCCAGGGC ACCGAGGACG ATTTGGATGA TCGTGTGATC GGATCCAGCG CCGCCCCTTC AGCATCCAAG CCTGTTCATG AGGGGTTGCG GTTCTCGCTT TTGGCGCCGC AACCGCGCCC GGCGCTGAAC CTGCCGATCG ACATCTTCTT TCGCTCGCTG GCCGAGGCTG TGGGCAAGCG TGCCATCGGT GTGATCCTGT CAGGTACCGG CTCGGACGGC AGCCGTGGGT TGCGTTCGAT CAAGGACCGT GAGGGGCTGG TGATCGCGCA GGAGCCCGCC ACCTGCGGGT TTGACGGGAT GCCGCAACAG GCCATCGCCA CCGGGCTTGT AGATCAGGTG CTGCAACCTG ATGATATTGT TGGTGAAATA TCCAGGTTTA TCGATTTGCG AGACCGTGGG ATCTCGGACG TGGACGAGAT TTTCGACGGT GCGCAGGACA GCTTTCGCGC GATCCTGGAA ACGGTCAGCA AACAGGCCGA GATCGATTTT GCGCTCTACA AGGAGCCGAC TCTGCAGCGC CGGATCGCCC GGCGTATGGG GTTTCTTGGG CTGAGCAATC TTGAAGATTA CCTGAGCTAT CTCGGCGAAA ACTCCGGCGA AGTCCAACTC CTCTACCGCG AGTTTCTGGT CGGAGTGACC AACTTCTTTC GGGATCTGCC AGTCTGGCAG GCGATGGAAA CCCGGGTGCT GGAACGTCTG TTTGCAGAAG GCGACACTGA TCAGCCTTTG CGGGTGTGGT CGGCGGGCTG CTCCACGGGG GAAGAGGCCT ATACGCTTGC GATGCTGTTG CAGAAGTTTC GCGACGACAA CCAGATCGAG CGTGATTTCC GGATCTATGC CACCGATGTG AATGAAAACG CGATCAACAC CGCCAAACAG GGCATCTATC CCGATCACAC GCTGGAAGAA ATTCCCGAGG CCTATCGCAA CGCGGGATAT ATCACGCATC ATCCGGGCAC ATTCGCGATC TCGCCCACCA TTCGCAGCCA GATCGTTTTT GCGGTCCACG ACATTACGCT TGATCCGCCC TATACGCGGA CCGATCTTAT CGTGTGCCGG AACCTGCTGA TCTATCTCGG CCCCGATGTG CAGGCCAAAG TCATGGTGAA CTTCTCCATG TCCCTCAGGA TAAACGGCTA TCTGCTGCTG GGCGCGGCAG AGACACCCGG CTCTGACGGG GTGCGGTTCG AGTATTTCAT GGGCAAGGAG CGTATCTTTC GTAACAAGCG CGTGGCGCGT GCGGGCAGTG GGCGGGCCAA GCTGGCCACG CAGATGCCAG CCCTTGGGAT GCTGCCGCGA ACGCGGCGCA TGATGTCCTC AGGTCTGTCA ATCCAGGATG ACCTCAGCGC GCTGTTCCAG TTTTCCCTAG AGGCTGGCCA GATGTCGATC TGCGTGCTGG ATCAGGGTTC CAATATTCTG AAAACATTCG GGAATATGCA GACCCTTCTG CATATTCCCG AAGGCGGGTT CTCCACCAAC ATCTTCGATC TCTGCGATGA TCGTCTGCGT AGTTCCATCG CGCTGGTGGT CCGTGGTGTC GAGGATCAGA CCACCGCACA GGCCTCGGAT ATGCGTCTGA TCGAGGGTGA CAGCGTGCGA ACCGTGTCAG TGTCTGCGCG CAAGATCATC TGGGAAGGCC ATGCCTCTGC TGTTGCGCTT TTTGTGCGGC AGATCACGCA GACCCTGCCC AAAGCGGCGG CCGAGAACAG TGACGAAGAA CCTCAGATCG AGAGGAGCGC CTATATCGAA CATCTCGAGA GCGAGGTGCG CTCGCTTCAG GAGATGCTCG GGGTGACGGC GCAGGATCTT GGTGCTTCGA ACGAGGAGTT GCAGGCCGCC AATGAGGAGT TGATCGCCGC AAACGAGGAG CTGCAGGCCA ACAACGAGGA AACCCAGAGC ATCAATGAAG AGCTCCATAC GGTGAACAGC GAGAACATTG ATCGCATCGC CGAGCTCGAA GAGGTGAATG CGGATGTCGA CAACCTGCTG GAGACGGCAG CTCTGGGGAT CTTGTTGCTC GACACCGATA TGTGCATTCG CCGCTTCAGT GCCGGGGTGA CGCGCTATCT GGATCTCAAA CACAGCGATC TGGGTCGCCC GCTCGAGAGC TTTGCCACCG CGCTGCTGCC CGAGGCTGTC ACGCTGCTGG TGGATGATGC CCGGCTGGCG CGGGATCAGG GCGAGGAAAC CCAACGCGAG CTGCGTCGGC GCGATGGCGG TTTTGTACAG ACCCGCGTGC GCCGCTTTAA CCGCCAGCGC GGAGACTCGC ATGGGGTGGT GATCACCTTG CTCGACATCA CGGATACCAA ACTGCTCGAG CAGGAGGCCC GGCGTCAGAG CGAAATCCTG TCCAGTGTGC TGGAGAGCGA GGAATCCGGC TATTGGGATT GGAATATCCC AGAGGATAAA CTCTATATCA GTCGCCGTTT TGTGGAGTTC CTGGGCTTTG GCGTCGGGGA ACTGGCGCCA AATTCCTCAG CGTGGCAGGG CCTGATCCAC AGCGATGACC GACCGCAGTT TCACGAGGCG TATCGGGCAC ATGTGAACGC GCGCGGCGAG GTGCCCTTCC TGATCGAGGC GCGCTATCTC ACCAAGGAGG GTGAGGAGGT CTGGATCAGG AGCCGCGGTC AAGTGACCGA TTGGGGGCAG GACCATCGCC CCTTGCGCAT GATCGGCGTT CACCAGAACA TCAGTGACCT CAGGGCGCGC GAGGATGACA TTGAGAAACG CGCTGATGAC ATGCGCCGCT TCGCCTATGT TCTGGCGCAT GATCTCAAGC AACCGCTGAA CACCATCGAG GGCAGCGTTC AGGCGCTCGA CGAGGAACTC CCCAAGACGC TGGACGCCGA TATTCACGAG CTCATGCGCT TTTTGCAGCA GGGCACGCAG CGGCTTAAAG CGCGGGTGAA TGCGGTTCTG GACTATGCGC GTTTGCAGGA TCAGACCACC CGGTTTGAAC CCTGTGATCT TGCGCAGATC ATCGACGCAT GTCTTGTCGA TCTCGAGGAC ACGGTGGCGC AGGCCAATGC GGAAATCGTG GTCGAGCCTT TGCCCGCTGT ATCTGGCACC CCGGAGCTGC TGGTGCGCCT GATGCGGAAC CTTCTGAGCA ACGCCTTGAA ATTCCGCGAT CCGGCGCGAC CGTTGAAGAT CACGATTGCC GCGATCAACG CCCCCTATGG CCGCGTGGGG CTCCGGGTGG ATGATACCGG CATAGGTATC GCGCCGCAGG ATCGCGCGCG GGTGTTTGAG CTCTTTTCAC GATTGCATGT CGAGTCAGAG ATCGAAGGCA GCGGCCTTGG TCTGGCGATG TGCGATCAGA TTGTGTCCAT CCACGGTGGG CAGCTCGAGG TGGTCGAAGC CGAGACCGGC GGCGCCAGCT TCCGTTTCAC CCTACCGGCA GCCCCTGCCG CCCCAGACGG AGCGTGA
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Protein sequence | MTENNISPLH PAQTGAHRKI GKVDERFYIV GVGASAGGLD AIKQLLARVP VDFAHSFVVV QHLSPDYKSV MTEILGRETQ HKVVEVSDNM RVEPKHIYVI PPGANIVIQG TEDDLDDRVI GSSAAPSASK PVHEGLRFSL LAPQPRPALN LPIDIFFRSL AEAVGKRAIG VILSGTGSDG SRGLRSIKDR EGLVIAQEPA TCGFDGMPQQ AIATGLVDQV LQPDDIVGEI SRFIDLRDRG ISDVDEIFDG AQDSFRAILE TVSKQAEIDF ALYKEPTLQR RIARRMGFLG LSNLEDYLSY LGENSGEVQL LYREFLVGVT NFFRDLPVWQ AMETRVLERL FAEGDTDQPL RVWSAGCSTG EEAYTLAMLL QKFRDDNQIE RDFRIYATDV NENAINTAKQ GIYPDHTLEE IPEAYRNAGY ITHHPGTFAI SPTIRSQIVF AVHDITLDPP YTRTDLIVCR NLLIYLGPDV QAKVMVNFSM SLRINGYLLL GAAETPGSDG VRFEYFMGKE RIFRNKRVAR AGSGRAKLAT QMPALGMLPR TRRMMSSGLS IQDDLSALFQ FSLEAGQMSI CVLDQGSNIL KTFGNMQTLL HIPEGGFSTN IFDLCDDRLR SSIALVVRGV EDQTTAQASD MRLIEGDSVR TVSVSARKII WEGHASAVAL FVRQITQTLP KAAAENSDEE PQIERSAYIE HLESEVRSLQ EMLGVTAQDL GASNEELQAA NEELIAANEE LQANNEETQS INEELHTVNS ENIDRIAELE EVNADVDNLL ETAALGILLL DTDMCIRRFS AGVTRYLDLK HSDLGRPLES FATALLPEAV TLLVDDARLA RDQGEETQRE LRRRDGGFVQ TRVRRFNRQR GDSHGVVITL LDITDTKLLE QEARRQSEIL SSVLESEESG YWDWNIPEDK LYISRRFVEF LGFGVGELAP NSSAWQGLIH SDDRPQFHEA YRAHVNARGE VPFLIEARYL TKEGEEVWIR SRGQVTDWGQ DHRPLRMIGV HQNISDLRAR EDDIEKRADD MRRFAYVLAH DLKQPLNTIE GSVQALDEEL PKTLDADIHE LMRFLQQGTQ RLKARVNAVL DYARLQDQTT RFEPCDLAQI IDACLVDLED TVAQANAEIV VEPLPAVSGT PELLVRLMRN LLSNALKFRD PARPLKITIA AINAPYGRVG LRVDDTGIGI APQDRARVFE LFSRLHVESE IEGSGLGLAM CDQIVSIHGG QLEVVEAETG GASFRFTLPA APAAPDGA
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