Gene CHU_1237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCHU_1237 
Symbol 
ID4187027 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCytophaga hutchinsonii ATCC 33406 
KingdomBacteria 
Replicon accessionNC_008255 
Strand
Start bp1428340 
End bp1433196 
Gene Length4857 bp 
Protein Length1618 aa 
Translation table11 
GC content44% 
IMG OID638071231 
Productchemotaxis response regulator (methyltransferase) 
Protein accessionYP_677849 
Protein GI110637642 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG1352] Methylase of chemotaxis methyl-accepting proteins
[COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATGGATA TAAAATCAGA CAATACACAT TACATAGTTG GTATCGGGGC TTCGGCAGGA 
GGTCTGGAAG CGTATAACGA TTTTTTTGAC AACGCGCCTG AAAACAGCCG GCTTTCGTAT
ATTCTTGTAC AGCATTTATC ACCGGATTAT AAAAGTCTGC TGGTAGATCT GCTGTCGCGC
CACACGCACA TGAAAATATA CGAGGCCAGG AATGAAATGG AGATCCGGCC GAATTGTATC
TATGTTATTC CGCCGGGCAA AAATCTTACG GTAGGTGAAG ACAAGCTGAT CATCCATGAA
AAGGACAGTC TGGATAAAGG CCCGAACACG TCTATTGATA CATTCTTTTA TTCCCTTGCC
GATAAGTACG GCGACCGTGC CATTGCCATT GTATTGTCTG GCACCGGTAC CGATGGTTCC
CGCGGGATAG AAGCCATTAA GGATGCCGAA GGGCTTGTGA TCGTGCAGGA CCCGCAGCTG
GCTAAGTTTG ACGGCATGCC GCGCAGCAGC ATTGCAACCG GGCGTGCGGA CCTGATCCTG
CCTACTTCGA AGATGCACGT AGAGATTATT AATTATATCA ATGAGCTGCC GGTTGTGAGC
CTTATTGAAA ATGAGATCGA CCAGGGAGTG TTGAACAAAG TGCTGCATGT ATTGCATAAG
CAGACAGGAT GTGATTTTCA GCAGTACAAG ATGCCGACAA TCCTTCGAAG GTTAACCCGC
CGCCTGGCCT TCCTGAAAAT ATCTACCGTA GAAGATTATC TGCACTACAT CATAGAGCAT
ACACAGGAAG GGAAAATATT TTGTAAGGAC CTGCTGATCG GTGTTACAAA GTTCTTCCGG
GATAAAGAGG CATTTGACAG CCTGCGTGAA AAAGTGCTGA TTCCGCTGAT TGATTCAAAA
CATGATTTTG AAACCATAAA AGTTTGGGTG AGTGCCTGCA GTACAGGAGA AGAGGTATAC
TCCATTGCAA TCCTGCTGCA TGATCTTATC CAGCAGCGCA ACCGCAACCT GGAAGTAAAG
ATTTTCGGCA CCGATCTGGA TGCTTCCCAT ATTGAAAAGG CTTCCAAAGC CGAATATCCG
GAATTTATTA ATAAGGAAAT TCCGCTGGAA TACCTGAGCC GGTATTTCAC AAAAAGAGAT
AATGTCTATA CAGTCATTCC TGAGATCCGC AAACAGATCG TATTTGCCCG GCATAATCTC
ATTACCGATC CGCCGTTTAT TAAGAACGAC CTGGTAAGCT GCCGGAACAT GCTGATCTAT
GTAAATAACC AGCTGCAGAA GATCATTTTA TCGAAGTTCA GTTTCGGGCT GAACAAGAAC
GGCTACCTGT TCCTGGGGCC GAGTGAAAGT ATTTCTACCA ATAAGGATGC TTTTGTGGAG
ATGGACCGCA AATGGAAACT GTACAGCAAA GCAGACACGG AAGGCAAGAG CACTTATCCA
GGACGTTATG AAGACAGGTT TGCCTTTCAT ACGAATATTA AGAAAGGTAA AACCACTGCT
GTCGGGATGG CTGAAAGCAA GGCTCTTTCA GAAGCCGTGC ACCAAACCAT TCTGGAAGAT
TTTGCTGTGG TTGGTTTTTA TCTGGACCGG CATTATATTA TTCATGACAC GATCGGGAAC
TATAAAAAAT ATCTGGTATT CCCGGAAGAA GGGTTGAAGT TCAATCTGCT GAAAATGCTT
CCGGATGCGG TATCCATTCC GTTAAATACC GCCCTTATCA AAGCCTGGAA GAACAATGAA
ACTGTTCTGC TCAATAATCT GCATTATGAA CTGAACGGTC AGTTCATCAG CCTGGTTATA
AGTGTGCGTC CCGATAAAGA AGTGCAGGGT AACACACTGG TAATGTTCAA TTCAACCCCG
CACATGTTCG ATATTGGCGA TAACAATGAG CACATGGAAG ATGGTCCGAA TAAGGAGCTG
CTGACCAAAC TCAAGCGGGA ACTTAAGGAA AGCAAGTTTA ATCTGCAGAC AGCTATTGAA
GAACTTGAAA CAACAAATGA AGAACTGCAG TCCAGCAATG AAGAACTGCT CTCATCCAAT
GAAGAGCTGC AATCGAGCAA TGAAGAGCTG CAGTCTCTGA ATGAGGAACT GCACACATTA
AATACCGAAC ATCAGCTCCG CATTCAGGAG CTGCTTGATC TCAACGACGA TCTGAATAAT
TATTTCCGGT GCAGCGACAT CGGCCAGGTG ATCGTTGATA AAGACATGCT GATCCGGAAA
TTCAACCCTG CCGCCGCAGG GCTTATTAAT ATCATAGAGA GTGATGTCTC ACGTTCCATT
ACACACCTTA CGACCAATTT CCGGTACGAT AATTTTGAAC GCGATATCAA ACAGGCGCTG
TTCGAGAACA AGATCATTGA AAAAGAACTG AATCTTGAAA ACGGTGTAAC GCTTCTTGTA
CGGATCTATT CCTATATCCG CAAGAACAAT ATCATTGACG GTGCGCTCAT CAGCTTTATT
GATATCAGCG GATTTAAGAA GCTGAACAGT ATTATCAATG GTGTATTCGA TTCAAGCAAG
AGTTCTATTC TTGCGCTTAG TGCATCCAGA AACAGGTCGG GAGAAATCTC TGAACTGTTC
AGCATTACTT CCAATTCAGT TGCCAATGAG CTGTTCGGGA AAAATCTTTC GGAAGAGCAC
GTGCCGTTTT CTGCTGTAAG CATGCATTTG TATGAGCTGA TCTACAAAGA TCTGGTGCGT
GTGGTTGAAA CCGGGAACAG TTTTGTAACC GAGCTGGGTT TAAACGATAA ATGGTTTGAT
GTGTCTGCTG TAAAGATGAT GGACGGGCTT GCGCTTACAC TGAATGATAT CAGTGACCGC
AAGATGATGG AAGACCAGCT GCGTAAAAGT TATGGTGAAC TCTTTGCCGC AAAAGAAAAT
CTGAAGACAC TTAATTACAA TCTGGAAACA CGTGTCGCTG AACGCACACG TGAGCTTGCT
ACGAGCGAAG AACGTTTTCG TCTGGTATCA ACCGTTACAA ACGATGTGGT GGTAGACTGG
AACTTTATGA ATAATTCGAT CTGGCTGAGT GATAATTATG AACGCCTTCT GGGATATAAA
AAAGATACGT TTGAACTTAC ACGTAAATTC TGGCTCAGTA ACATTCATCC GGAAGACCGC
GACCGGATCA ATAAGGCCGT TAATGCCTAT ATCAATACAT CCCAAACACA CTGGGAACTT
GAATACAGGT ATCAGCATGC AGACGGCAGC TATAAGCTGA TCAATGACAG AGGCTATCTG
ATGCTGGATG AACACGGAAC GCCGTACCGC ATGCTGAGCT CGATGCTGGA CATCACGGAG
ATACGCGATA CCAAAAAAGA TCTGAAGGAA AGTGAGATGC GTCTTAGCCT GGCGCTGGAC
GCGTCTAATA TGGCGGCATG GCACATTGAT ATGGATACCA GACACATTGC TTATTCAGAC
ACGCTTGCCG TTATATTCGG GTACCCGAAA GATACAACTC TGGTATGGAG TGATCTTGTT
GCGCAGATTT ATCCGGAAGA TATGCATTTA TATCAGACAG CCAGACAGCA AATGGAAACT
ACAGGACTGT ATGAATATGA AATACGTATT GTATGGCCCG ATAACAGCAT CAAATGGATT
AAAACCATTG GTAAGATGTT GCTTGATTCA GATGGCAGTC AGCGGCGTAT GATCGGTATC
ACACGCGATA TTACTAAAGA TAAAGAGGCA TCTCTGCAGC TGGAACAAAT GGTTGTAAAG
CGTACCGCTG AATTGCGCAA AAAGAATGAA GATCTTTCCC AGCAGAATGA GTTTATTGAA
ACCATCTTTG ATGCTTCTGT AAATTCGATT GCGGTTGTTA ATAAGGATCT GGTAATTACT
TCTGTAAATA AAGCCTGTGA AGATATCTTC CTGATCAGAC GTGAAGCGGC GATCGGTCAG
AAATATACCG ATGTGTTCAG TCAGTCTGAG GCCGTATTTG ATTATGAAAA TATTCTGAGC
GTATTCTCCG GACAAAGCCT GCACAACAGT GTACTGATCA ACCGCGGCCC GGAGACTAAG
TATCTGGACA ATTATTTTAT CCCGCTTGCA TATAACAATA TGGTTTACGG CGCATTGATC
ATTTCGCATG ACATTACCGA GATCAATGCC GCCAACCAGA AGCTGAGCCA GATCAATAAT
CAGCTTATAA AATCCAACAG CGATCTGGAA CAGTTTGCCT ATATAGCGAG TCATGATCTG
CAGGAACCGT TGCGGAAAAT CCGTGTCTTT ATTTCGCTGC TAAATCAGAA GCGGGCAAAA
GATGATGTAG ATACGTATCT GCAGAAGATC GCAGCATCAG CCGAGCGGAT GTCATCGCTG
ATAAAAAATG TTCTGGATTT TTCGCGCTTG TCTTATGACC ATAACGCGAT GACAGATATA
GACCTGAACA GTACGATCAG TTATCTGCTG GTTGATTTTG AACTGATCAT AAAAGAAAAG
GGTGCTGTGG TTCATGTCGG GAAGCTGCCG CACATCAACG GTATTGCGCA TCAGATCAGT
CAGCTTTTTT CAAATCTGCT GAGTAATTCA CTAAAGTTCT GCGTGCAGAA ACCATTGATA
TCCATTGAGG CAATACAGCT TACAAATAAA CAGGTACGGA CATTTGAACA GCTTGATCCT
TCACGGAAAT ATATTGTTAT TTCTTTTAAA GATAATGGGA TCGGGTTTGA ACAGAAGTAT
GCAGATAAGA TATTCGGTTT CTTTTACCGC ATGGCGCAAA CAGAAATAAA TTACAAAGGC
AATGGAATCG GTCTGGCACT TTGTAAAAAG ATTGTTGAGA ACCATGGCGG GCTTATTAAC
GTGGAGTCTG AGATCGATAA AGGAACAACA TTCAGGATCA TTCTTCCGTT ATTTTAG
 
Protein sequence
MMDIKSDNTH YIVGIGASAG GLEAYNDFFD NAPENSRLSY ILVQHLSPDY KSLLVDLLSR 
HTHMKIYEAR NEMEIRPNCI YVIPPGKNLT VGEDKLIIHE KDSLDKGPNT SIDTFFYSLA
DKYGDRAIAI VLSGTGTDGS RGIEAIKDAE GLVIVQDPQL AKFDGMPRSS IATGRADLIL
PTSKMHVEII NYINELPVVS LIENEIDQGV LNKVLHVLHK QTGCDFQQYK MPTILRRLTR
RLAFLKISTV EDYLHYIIEH TQEGKIFCKD LLIGVTKFFR DKEAFDSLRE KVLIPLIDSK
HDFETIKVWV SACSTGEEVY SIAILLHDLI QQRNRNLEVK IFGTDLDASH IEKASKAEYP
EFINKEIPLE YLSRYFTKRD NVYTVIPEIR KQIVFARHNL ITDPPFIKND LVSCRNMLIY
VNNQLQKIIL SKFSFGLNKN GYLFLGPSES ISTNKDAFVE MDRKWKLYSK ADTEGKSTYP
GRYEDRFAFH TNIKKGKTTA VGMAESKALS EAVHQTILED FAVVGFYLDR HYIIHDTIGN
YKKYLVFPEE GLKFNLLKML PDAVSIPLNT ALIKAWKNNE TVLLNNLHYE LNGQFISLVI
SVRPDKEVQG NTLVMFNSTP HMFDIGDNNE HMEDGPNKEL LTKLKRELKE SKFNLQTAIE
ELETTNEELQ SSNEELLSSN EELQSSNEEL QSLNEELHTL NTEHQLRIQE LLDLNDDLNN
YFRCSDIGQV IVDKDMLIRK FNPAAAGLIN IIESDVSRSI THLTTNFRYD NFERDIKQAL
FENKIIEKEL NLENGVTLLV RIYSYIRKNN IIDGALISFI DISGFKKLNS IINGVFDSSK
SSILALSASR NRSGEISELF SITSNSVANE LFGKNLSEEH VPFSAVSMHL YELIYKDLVR
VVETGNSFVT ELGLNDKWFD VSAVKMMDGL ALTLNDISDR KMMEDQLRKS YGELFAAKEN
LKTLNYNLET RVAERTRELA TSEERFRLVS TVTNDVVVDW NFMNNSIWLS DNYERLLGYK
KDTFELTRKF WLSNIHPEDR DRINKAVNAY INTSQTHWEL EYRYQHADGS YKLINDRGYL
MLDEHGTPYR MLSSMLDITE IRDTKKDLKE SEMRLSLALD ASNMAAWHID MDTRHIAYSD
TLAVIFGYPK DTTLVWSDLV AQIYPEDMHL YQTARQQMET TGLYEYEIRI VWPDNSIKWI
KTIGKMLLDS DGSQRRMIGI TRDITKDKEA SLQLEQMVVK RTAELRKKNE DLSQQNEFIE
TIFDASVNSI AVVNKDLVIT SVNKACEDIF LIRREAAIGQ KYTDVFSQSE AVFDYENILS
VFSGQSLHNS VLINRGPETK YLDNYFIPLA YNNMVYGALI ISHDITEINA ANQKLSQINN
QLIKSNSDLE QFAYIASHDL QEPLRKIRVF ISLLNQKRAK DDVDTYLQKI AASAERMSSL
IKNVLDFSRL SYDHNAMTDI DLNSTISYLL VDFELIIKEK GAVVHVGKLP HINGIAHQIS
QLFSNLLSNS LKFCVQKPLI SIEAIQLTNK QVRTFEQLDP SRKYIVISFK DNGIGFEQKY
ADKIFGFFYR MAQTEINYKG NGIGLALCKK IVENHGGLIN VESEIDKGTT FRIILPLF