| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rsph17025_2264 |
|---|
| Symbol | |
|---|
| ID | 5083758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides ATCC 17025 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009428 |
|---|
| Strand | - |
|---|
| Start bp | 2299283 |
|---|
| End bp | 2302780 |
|---|
| Gene Length | 3498 bp |
|---|
| Protein Length | 1165 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640483828 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_001168459 |
|---|
| Protein GI | 146278300 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins
[COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
[COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.620072 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0600346 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAAA AGCTCTCCGA AGTCGAATCC GGAGCCGACC AGGAGCTGAT CCTCCTCGGG
GTCGGGGCTT CGGCTGGCGG GCTCGAGGCG TTCCAGAGCC TGCTGGGGGC GCTGCGTCCC
ACGGACCGCT TTGCCCTGAT CCTTGTCCAG CATCTCGATC CCGAACATGA GAGCCTGCTG
CCCGAACTGC TCTCGAAGCG CACGCGGCTG CCGGTGCGAT CGATCTCGGA CGGGATGGAG
GTCGAGGCCG GCAACATCTA CCTGATCCCG CCGGCCTTCG GTCTCGATAT CCGGGGCCGG
ATGCTGAAGC TGGAGGAGTT CGAATCCCCG CGCGGCCTTC GCCGTCCGAT CGATGATTTT
CTTCAGGCGC TCGCCCGCGA GCACGGGGCG AATGCGGCGG GCGTGATCCT GTCGGGGACC
GGATCGGACG GGGCCAACGG CGTCCGGGCG ATCAAGGAGG CGGGGGGCCT TGTCTTTGCG
CAGGATCCCA GGGACGCGCG CTATGACGGG ATGCCGCGCG CGGCGATCGC CACGGGCGCC
GTCGATCTGG TGCTGCCGGC GGGCGAGATG ATCAGCATCC TGCGCGACTT TCACGACCGC
GCCTCGGGGA TCGCCCCCAC CATCGAGAGC GACGCCGAGT TCATCGAGAA GGTGGTCCGC
AACGTCCGCT ACCGGACCGG CCATGATTTC GCGGGCTACA AGAGCGGCAC GCTGCTGCGG
CGGATCACGC TGCGCATGTC GGTCCTGGGG CTGGAGGAAC CGGGCGACTA CCTGCGCGAG
CTGGTCCAGA ACCGCAGCGA GGCCGACCGT CTCTTCCGCG ACCTGCTGAT CAACGTCACG
AGCTTCTTCC GCGATCCGGC GGCCTTCGAG TCGCTGGCGC GGGTCGCCGT GCCGGCCATC
CTCGAGAGCA AGGACCGTGG CGACGAGGTG CGGATCTGGG TGCCCGGCTG CTCGACGGGA
CAGGAGGCCT ACACCGTCGC GATGATCGTG GCGGATGCCA TGGCGCGGCT CGACGTGCGG
GCGCGGCTGT GCGTCTTCGG CACGGACATC GACGAGGAGG CGCTGGCGGT CGCGCGTCGG
GGGCATTATC CCAACTCCAT CGCGGCCGAG GTGCCGCCCG AGTTCCTCGA ACGCTATTTC
ACGCCGACGC GGAACGGCTT CGAGGTGCGG GGCGAGTTGC GCGATGCGGT GCGCTTTTCC
TCGCAGAGCC TGGTGAAGGA CCCGCCGTTC TCGCGGCTCG ACCTCGTGAC CTGCCGCAAC
CTGCTGATCT ATTTCAACAA CGAGCTTCAG GAACTGGCGC AGCGCGTCTT TCACTATGCG
CTGCGGCCGG GCGGGTTCCT GATGCTTGGC CCCTCGGAGA CGGCCAGGGC AGAGGGCGAG
CCCTTCCTCG ACGTGGTGCC CGAACACCGC ATCCACCGCC GCAACGAGGG CGCGGCGCGC
TCGCTCGATC TGCCCCGACG CTTCCGTGGC ATCTCGACGG GGACAGAGCC CTCGCACGAG
GTCTTGCCCG AGCAGGTGTT CGGCATTCCC TATTCGGCCG CCGAGGCGCT GCTGGCGCGT
CATGTGCCCG CCTTCCTGCT GATCGGCCCG CAGGATGAGG TGACGCGCGT GGGGCCCGGC
GCCGAGTCCT TCGTGCGGCT CAATCCGGGG AACACCTCGC TGGGCATCCG GTCGTTGATC
CTGCCCGAGC TTGAGCAGCC GGTGAAACGG CTGCTGACGG CGGGGGCGAT CGCGGGGGGC
GGCTACCGGC AGACGCGGGT CGCGTTTGCC GACCCCTCGG GCGCGCGGGA TGTGCTGATC
GGGGTCGAGA CGCTGCCGGA CGGCTCTCGG CTCGTCACCT TCGGCGCCAC GGCCGCCGTG
CCCGAGCCCG AGAACCGGAT CGTGCTTGAC GAAGCCTATG TAAGCCAGCT CGAGGACGAG
CTGGAAGAGG CGCGCCGGAT GGTGCGCACC ACGGTGGAGG AACTCGAGAC CTCGAACGAG
GAGCTGAAAA GCTCGAACGA GGAAATGATG TCGATGAACG AGGAGCTCCA GTCGGCGAAC
GAGGAGCTTT CGACCACCAA CGAGGAGTTG CAGACCAAGC TGATGGAATT GGCCGAGGCC
AACGCGGACC TTGCCAACTT CATGTCCTCG ACCCAGATCG CGACCGTCTT TCTTGATCGC
GACCTCAGGC TGCGCAGCTT CACCCCCGAG GCGGCCAGCT GGTTCCGCTT CGTGGATCAG
GACCGCGGAC GCGAGATCAC CGACATTCGT GCGCGCCTCG ACATGGGCGT GGTGGCCGAG
GTGAGCCGGC GCATCGCCGA CGGCGGCGCG CCCGAAGAGG TGCGGCTGGC CTCGTCGGAT
GGCGAGGCCG AGGTGATCGT GCGGTTCGCG CCCTACCGCA ACGCCTCGGG CGACCGGGGC
GGGGTGGTCT TCTCGGTGTT CGACGTGACC GCGGTTGCCC GCTACGCGCG GGCGGCCGAA
CGGGCCTCGG CCGAGGCCCG CGCCAGCGCC GAGGAGATCG AGGAACTCTA CCTCGGCAGT
CCCGGCGCGA TGGGCCTTGT GGACCGCGAC TTCCGCTACC TGCGGGCGAA CCCGAAGATG
GCCGAGTTCA GCGGCCTGCC GGCCGATGCG ATCGTCGGCC GCTCGATTTC GGAAGTGCAT
CCCGAGATCG CGGGGCGGAT GGTGGCGTCG GTCCGCAAGG TGTTCGACAC GGGCGAGCCG
GTGCTGCGGC AGATGGTGCG CGGCACGACG CCGGCCGAAC CGGGCGTGGC GCGGGTCTGG
GAGGTGGACT GGTATCCGGT CCATCGGTCC GACGGGGTGC GCGCCGTGGG GTTCAACGTG
ACCGACGTCA CCCGCCTGCT CGAGTTGCAG GCCGACCTCC GCCGCATCAT GCGCGAGCTG
CAGCACCGGG TGAAGAACAT GCTCTCGAAC GTGATCGCGC TGGTGAACCG CGCGCGGCGC
GAGCAGGGCG ACCCGCAGGA GATCCTCGAG ACGCTGGCGC AGCGCATCCG CGCCCTGGCC
AACACCCACA ACCTGCTGAC GGCCGAGAAC TGGGCCTCGA CCGCGCTGCG CGACATCCTC
GCGCTCGAGC TTCTGAACGT CTATGGCGAA GAACGGGTGA TGCTGCGCGG GCCCGACATG
CGGCTCAACG CCCGCGCCAC GCTGAGCCTC GGGATGGTGA TCCACGAGCT TGCGACCAAC
GCCTCGAAAT ACGGTGCCTT CGCCCGCCCC GAGGGCAAGG TGTCCGTCCG CTGGTCGCGC
GTGGACGAGG GCGAGGGCGA GGAGTTCCGG CTGGTGTGGC AGGAGAGCGG CGGTCCGGCA
GTTAATGCGC CGTCCCGAGA GGGATTCGGC ACCCAGCTCA TGCGCTCCAT GGTAGAGGGC
TCCTTCAACG GCAGCATCGA CAGCCACTGG GAACCGGCCG GACTGCGCCT CGTTGTGGCC
GTGCCCTGGA ATGCAGCAAC CGAAGTGGAC TACGACAGTG ACATGGACCC CCTCCGCCAT
GCGGATCCTC TACCTTGA
|
|---|
| Protein sequence | MTEKLSEVES GADQELILLG VGASAGGLEA FQSLLGALRP TDRFALILVQ HLDPEHESLL
PELLSKRTRL PVRSISDGME VEAGNIYLIP PAFGLDIRGR MLKLEEFESP RGLRRPIDDF
LQALAREHGA NAAGVILSGT GSDGANGVRA IKEAGGLVFA QDPRDARYDG MPRAAIATGA
VDLVLPAGEM ISILRDFHDR ASGIAPTIES DAEFIEKVVR NVRYRTGHDF AGYKSGTLLR
RITLRMSVLG LEEPGDYLRE LVQNRSEADR LFRDLLINVT SFFRDPAAFE SLARVAVPAI
LESKDRGDEV RIWVPGCSTG QEAYTVAMIV ADAMARLDVR ARLCVFGTDI DEEALAVARR
GHYPNSIAAE VPPEFLERYF TPTRNGFEVR GELRDAVRFS SQSLVKDPPF SRLDLVTCRN
LLIYFNNELQ ELAQRVFHYA LRPGGFLMLG PSETARAEGE PFLDVVPEHR IHRRNEGAAR
SLDLPRRFRG ISTGTEPSHE VLPEQVFGIP YSAAEALLAR HVPAFLLIGP QDEVTRVGPG
AESFVRLNPG NTSLGIRSLI LPELEQPVKR LLTAGAIAGG GYRQTRVAFA DPSGARDVLI
GVETLPDGSR LVTFGATAAV PEPENRIVLD EAYVSQLEDE LEEARRMVRT TVEELETSNE
ELKSSNEEMM SMNEELQSAN EELSTTNEEL QTKLMELAEA NADLANFMSS TQIATVFLDR
DLRLRSFTPE AASWFRFVDQ DRGREITDIR ARLDMGVVAE VSRRIADGGA PEEVRLASSD
GEAEVIVRFA PYRNASGDRG GVVFSVFDVT AVARYARAAE RASAEARASA EEIEELYLGS
PGAMGLVDRD FRYLRANPKM AEFSGLPADA IVGRSISEVH PEIAGRMVAS VRKVFDTGEP
VLRQMVRGTT PAEPGVARVW EVDWYPVHRS DGVRAVGFNV TDVTRLLELQ ADLRRIMREL
QHRVKNMLSN VIALVNRARR EQGDPQEILE TLAQRIRALA NTHNLLTAEN WASTALRDIL
ALELLNVYGE ERVMLRGPDM RLNARATLSL GMVIHELATN ASKYGAFARP EGKVSVRWSR
VDEGEGEEFR LVWQESGGPA VNAPSREGFG TQLMRSMVEG SFNGSIDSHW EPAGLRLVVA
VPWNAATEVD YDSDMDPLRH ADPLP
|
|---|
| |