| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0327 |
|---|
| Symbol | |
|---|
| ID | 5410482 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 314795 |
|---|
| End bp | 317821 |
|---|
| Gene Length | 3027 bp |
|---|
| Protein Length | 1008 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640867543 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_001403492 |
|---|
| Protein GI | 154149874 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACAA AACCAAAACC AAAATCCGGC CCGGTAAAAA AGAATGTACC GGAGAGAAAA
TCCTCTCCTG ATAATGGGGC AGTCCCGGAA AAGGGTGAGG CACTGTTCCC TATTGTCGGG
ATCGGCGCTT CGGCGGGCGG GCTCGAAGCC TTTGAACTCT TTTTCAAGAC CATGCCGGCC
GACAGCGGCA TGGCGTTTGT GCTCATCCCC CACCTCGATC CCGGGCATGC GAGCATGCTT
TCCGAGATCC TCCAGCGCAA CACCACGATG CCGGTCCATG AAGCAGAAGA CCAGACGAGT
ATCCGGCCGG ACCACGTGTA CATCATCCCG CCCAATAAGG ACATGGCGAT CTTCCACGGG
GTGCTCCAGC TCAGCACTCC CGAACAGGTC CGGGGGATGC GGCTCCCGAT CGATTCGTTT
TTCCGGTCGC TTGCCGAGGA CCAGGGCGAG CGGGCGATCT GCGTGATTCT TTCCGGCAGC
GGGTCTGACG GCACCCTTGG CCTGCGTGCA GTCCACGGGG CGGGCGGGGT CTCGTTTGTG
CAGGATCCTT CCACGGCAAA GTACGACGGC ATGCCCACAA GCGCGTCCCA GAGCGGTCTT
GCCACCTACA TCCTGCCGGT GGAAAAGATA ACCGGACAAC TGGTCAGTTA TGTAAAGAAC
CTTGCCCAGA CCGGCGTCCA CCCGGTTCCT ATGGCGTCAA AAGCGGTGAA TGCCACACGA
AGGATCCTGA TGCTCATGCG GTCAAAGACC GGGAACGATT TCTCCCAGTA CAAGCAGAGC
ACGATCCAGC GCAGGATCGA ACGGCGGATG GTGGTACATA ATCTCAGCGA CATGGACACG
TATGCACGCT ACCTCCAGGA AAATCCTGCC GAGGTCGCCA TCCTCTTTAA GGAGCTGCTC
ATCAACGTGA CCAGCTTTTT CAGGGACAAG GAAGCGTTCG AAGCGCTGGA AACAGAAGCC
CTGCCCCTGC TTTTTGAGGA AAAACCGGAG AACTATATCT TCCGGATCTG GGTGCCGGGG
TGCGCTTCGG GCGAAGAAGC TTATTCGCTT GCCATGCTTT TTAAGGAGAA GATAGATGAA
TTCCGGCAGG ATTTCAGGGT CCAGATCTAT GCAACCGATA TCGATGACGA TGCGATCGCA
ACAGCCCGGG CGGGGATGTA CCCGTCCAAC ATCTCCCTTG ATGTCTCCCC CGAACGGCTC
CGGCGGTTTT TCACTAAAGA GGAGACCGGG TTCCGGATCA AAAAAGAGAT CCGGGAGATG
GTGGTCTTTG CCGTCCAGAA CGTAATAAAA GACCCGCCGT TTACCAAGAT GAACCTTATT
TCCTGCCGGA ACCTGCTGAT TTATTTTGAA AGCGAGCTCC AGGCCCGGGT GATCCCGGCC
TTCCATTACG CGCTCAGCAC CGGGGGGATA CTCTTTTTGA GCCCCTCGGA AGGGATCGGG
AATTTTACCG ATCTCTTTAG TCCCGTCAAC AAGAAGTGGA AGATCTACCG GGCCAAACCC
TCGGGTCTGT CCGCCCGGGC GCTTGTGGCC CAGCGCTTTG CATGGACCAC CGAACCGTCA
AAAAAGGAAC CGGGCGAGGT TTTCCTCCCC TCCGACAAGA CAAATTTTGC CGAACTCACC
CGGCGCGTGC TCCTTGCGTC CTTTGCCCCG CCGTCGGTCA TAACCGATGA GAACGGGAGC
ATCATCTATG TGCACGGGGA CACCGGCAAG TATCTCCAGC CGGCACCGGG ACAGATCAGC
ACCAGTGTCA TCGACATGGC CCGCGAGGGA CTGCAGTTGG ATGTGAGGAG TGCGATCCAG
AAAGCATCTG CAAAGAAGAC TACGGTTGTC GTAAAAGGCC TGCGAGTCAG GACGAACGAC
GGTATCAGGG GAGTGGACCT CACGGTACGC CCGCTTACCG ACCTTGAGCC GGCACGGGAA
CTGCTGCTCA TCAGTTTTGA AGAGACAAAG CAGCCTCCCG CAAAAAAACG CCGGTCGGGC
AAATCCTCCG GGACCGGGGA GCAGGGATCG CAGCGCATCG AGCAGCTGGA GCAGGACCTT
GCCTATACAA AAGAAAACCT GCAGGCCACT ATCGAGGAGA TGCAGGCAGC AAACGAGGAA
CTCAAGTCCT CAAACGAGGA ACTCCAGTCT ACAAACGAAG AACTCCAGTC CACAAACGAG
GAGCTGGAAA CCTCAAAGGA AGAACTCCAG TCGGTTAACG AAGAGATCGT GACGGTTAAC
GCAGAGCTGC AGGCAAAGAT CGAGCAGCTC ACGGCAGTCC AGAACGATAT GAAAAACCTT
CTCGAAAACG TCAACATCGG TACTATCTTC CTTGACACAA GCCTTGCCAT CAGGAGGTTC
ACCCGCGAGG CAAAGCGGGT ATTCCGGCTT GCTGCCGCCG ATACGGGAAG GCCGCTTGCG
GATATCCGGT CGAACATCCC GGATACGGAC CTTATTGCCG ATGCACAAGG AGTACTTGAC
TCGCTCATAC CCCGGGAAAA ACCGGTTCGC ACGGCAGGTG GCGAGTGGTT CCTTGTCCGC
ATTATGCCGT ACCGCACGCT GGAGAACGTA ATCGACGGCG TAGTAATGAC GTTTTCCGAT
ATCTCCGCGT TAAAAGCAGT GGAAGCCGAG GCCCGGGCAG CCTGCGACTA TGCACAGAAC
ATTGTCGATA CGATCCGGGA GCCGCTCGTG GTCCTGGATT CTGCCTTTGA AGTGGTTTCG
GCAAGCGGGG CATTTTACCG GACCTTTGGC GTGACACCGG AAAAGACCCT GGGGAAATCC
CTTTTTGCGC TTGGCAACCG GCAATGGGAT ATACCGGAAC TCCACGAGCT GCTGGAGACA
GTCCTGCCAA AGAGTACGAC CTTTGAAAAT TTCGAAGTCC GGCATGATTT CCCCGGTATC
GGGCAGCGGG TCATGGTCTT AAATGGCCGA AAGGTTATTG ACGACACGGG GAGTATTCAC
CATATCCTGC TTGTAATGGA AGATATTACT CCCCAAAGAA GGGGAGCGGA TAAAAAACCT
GTCCGGGGGA GCCGGGGAAG GGCCTGA
|
|---|
| Protein sequence | MMTKPKPKSG PVKKNVPERK SSPDNGAVPE KGEALFPIVG IGASAGGLEA FELFFKTMPA
DSGMAFVLIP HLDPGHASML SEILQRNTTM PVHEAEDQTS IRPDHVYIIP PNKDMAIFHG
VLQLSTPEQV RGMRLPIDSF FRSLAEDQGE RAICVILSGS GSDGTLGLRA VHGAGGVSFV
QDPSTAKYDG MPTSASQSGL ATYILPVEKI TGQLVSYVKN LAQTGVHPVP MASKAVNATR
RILMLMRSKT GNDFSQYKQS TIQRRIERRM VVHNLSDMDT YARYLQENPA EVAILFKELL
INVTSFFRDK EAFEALETEA LPLLFEEKPE NYIFRIWVPG CASGEEAYSL AMLFKEKIDE
FRQDFRVQIY ATDIDDDAIA TARAGMYPSN ISLDVSPERL RRFFTKEETG FRIKKEIREM
VVFAVQNVIK DPPFTKMNLI SCRNLLIYFE SELQARVIPA FHYALSTGGI LFLSPSEGIG
NFTDLFSPVN KKWKIYRAKP SGLSARALVA QRFAWTTEPS KKEPGEVFLP SDKTNFAELT
RRVLLASFAP PSVITDENGS IIYVHGDTGK YLQPAPGQIS TSVIDMAREG LQLDVRSAIQ
KASAKKTTVV VKGLRVRTND GIRGVDLTVR PLTDLEPARE LLLISFEETK QPPAKKRRSG
KSSGTGEQGS QRIEQLEQDL AYTKENLQAT IEEMQAANEE LKSSNEELQS TNEELQSTNE
ELETSKEELQ SVNEEIVTVN AELQAKIEQL TAVQNDMKNL LENVNIGTIF LDTSLAIRRF
TREAKRVFRL AAADTGRPLA DIRSNIPDTD LIADAQGVLD SLIPREKPVR TAGGEWFLVR
IMPYRTLENV IDGVVMTFSD ISALKAVEAE ARAACDYAQN IVDTIREPLV VLDSAFEVVS
ASGAFYRTFG VTPEKTLGKS LFALGNRQWD IPELHELLET VLPKSTTFEN FEVRHDFPGI
GQRVMVLNGR KVIDDTGSIH HILLVMEDIT PQRRGADKKP VRGSRGRA
|
|---|
| |