Gene Smed_5776 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5776 
Symbol 
ID5320078 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp747465 
End bp750947 
Gene Length3483 bp 
Protein Length1160 aa 
Translation table11 
GC content60% 
IMG OID640777483 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001314415 
Protein GI150377820 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG1352] Methylase of chemotaxis methyl-accepting proteins
[COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
[COG3920] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.491611 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0137055 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTCAAA AAGCTGATCC TCCGATTGTC GCGATTGGGG CTTCCGCCGG GGGCGTCCAG 
GCACTTCAGA CCTTTTTTGA TCTTATGCCG ATTGACACTG GCGCGACTTT CGTCGTCATT
GTCCATCTCG ATCCGCACGC CAGAAGCGAG CTTGCGAACA TTTTGGCGGC ACGGACGCGC
ATGCCGGTTA CGCAGGTCGA GGACCAGGCG CGTCTTGAAA GCAACCACGT TTACGTCATC
GCGCCAAACC GTCGGCTTAA GATTGCCGAC GGTACGATAG CCGCGCTCCC CTTCGAAGAG
CCGCATGCCC TCCGCGCGCC CATTGATTTT TTCTTTCGAT CGCTTGCCGA GGAGCATCGG
AGCGAATTTG CGATTATTCT CACTGGTGCC GGGGCGGACG GTGCGATTGG GGTCAAGGCT
ATCAAGGAGG CGGACGGAAT CGTGCTCGTC CAGGATCCCG ATGAGGCAGA ATATGCCTCC
ATGCCGCGCA ACGCCATCGC CACTGAGGTT GCAGACTTCG TGCTGCCTAT CCGAGAGCTT
CCTCATCGGG TGGCTGAGTT GCTCGCCCGC CGTGATCAGC TTCCGTCCCA CCAGTTCCGC
GTAAACGATG ATGAGATGAT CGGGCGAATT GTGGCCCATG TGCGCGGCCG AACCGGACAC
GATTTCTCCC AATACAAGCG GGCTACGATT TTGCGGCGTA TCGGACGGCG AGCGCAGGTT
GCCAGGAGGG AGACCTTTGC GGACTACTAC AACTACCTGC GCGAGAATCC AGAGGAAGCT
CAGGCGCTGT TCAGCGACTT TTTGATTTCG GTTACAACGT TCTTTCGCGA TCCTTCGGCT
TTCGAGGTAC TGGCCGAAAG AGTCATCCCA CACCTGTTTG ACGGAAAAGA AGTTGCCGAC
AAGATCAGGG TTTGGGTTCC GGGCTGCGCT ACCGGTGAGG AGGCCTACAC AATTGGCATC
CTTCTGCTCG AGGAGGCGGC ACGCCGCGAC CTCTCGCCGG AAATCCAGGT CTTCGGCTCG
GACCTCGACG AACAGGCACT TCGCATCGCG CGCGAGGGAC GATACCCGTC GACGGTCGAA
GGCGATCTCT CGGAGGAACG ACTTCGCCGT TTCTTCCAGC GTGAGGGAGA TCATTATCGA
GTGCGCCGCG ATTTGCGAGA CGCGGTTCTG TTTGCCAGCC ACAGTCTACT TAGAGACCCG
CCCTTCTCCC ATCTCGACAT GATTTCCTGC CGAAACCTGC TGATCTACCT CGATCGGCAG
CTGCAGCAGC AGGTGTGCAA CACGTTTCAT TACGCGCTCA ACGCAGGTGG TTTCCTCTTC
CTCGGATCGT CGGAAAGTGC TGACTGCCCC GGACTCTTCC GCCCTGTGGA TCGCGAGGCG
CGTATCTACA GGGCACTAGC GGGCGCCGGT GCTCGACCCA TGGTGCTGCC GGCGCTGCTT
GGGCCACATA AGCCGGAAAT GAAATCGACC ATTATTCGGA CGCCGCCGGC AGGGCACGGC
AGCGACGCAG CGGTACACCG CCAGATGCTC GAGAAAATCG CGCCTCCAAG CATGCTGGTT
GATGAAAGCC ACCACGCAAT TCATCTTTCG GAAAATGCCG GACGGTTTCT CAAGCCGTCG
GGAGGCCCTG TTAGTACCGC CGCCACGGAT CTCGTGCGTG AGGAATTTCG CTTCGATCTA
AGAGCAGCGC TGCACCGGGC CTTTGGGCGG AATGAACCCA CGTTGAGCAT GCCCATTCTT
GCTGACCTCG ATGGGCAGCC GCACCGGGTC TACCTGCAAG TGAAGCCTGT GGTCCGGGGG
ACGGAGCGTA CGAGGCATGC TCTTGTGCTC TTTATCGAAG GTGAAGCCAT CGACAAGACC
CAGGAGGTCG TGCTCGATAC GCTTGACGGG CGCCCGACGA TTGACGAGGC GATCCGCCGA
TTGCAGGAGG AATTGCAGCT CGCGCAAAAC CGGCTTCGCC TGACGAGCGA GGAGTCGGAC
ACTGCTACTG AGGAGTTGCG GGCTGCCAAC GAAGAGCTGC AGTCGATGAA CGAGGAATAC
CGTTCGACGG CCGAGGAACT GGAAACGAGC AAGGAAGAGC TACAATCCAT CAACGAGGAG
CTGCAAACTG TCAACAATGA GCTCAAGCTG AAGCTGGAAA GCATATCGCG CGCTAACAGC
GACCTACAGA ACTTGATGGC CGCGACCGAC ATCGCGACGC TTTTCCTTGA CCCCTCCCTG
CGTATCAAGC GGTTTACCCC GCGTTTGACG GAAATATTTA ACGTCACTTC GAACGACGAA
GGCCGGCCGA TCACTGATTT CACGCATCGC CTCCAATATA AGAGACTTTC TGATGACGCG
CGGGCGGTGC TGGAGACACT CAAGCCAGTC GAACACGAGG TGAAGGGCCG CAACGACGGC
TGGTATCTGG TGCGGATGCG CCCCTACCGA ACAATCGAAG ACAAGATAGA CGGCGTTGTG
GTCACGTTCG TCGACATCAG CGAGCGGCGC CATGCCGAAG AGGCGGCGAA GGAGAGCGGG
CAACGCCTTG AGCAGGAAAT GCGGCTTGTC GAGCTTTCGC GCTCACCGAT ATTCGTGTGG
GACTTTGACG ATGGCGTAAT GCAGTGGAAT CGCGGCAGCG AGGAACTCTA TGGTTATTCG
CGTGAGGAGG CGCTCGGAAG ACGCAAGGAA GAACTGCTCA AGACCGGCGT TCCCGGCTCG
TCCTTTGACA AGCTCAGGCG AACACTCAGC CAAAAGGGCC GTTGGAGCGG CGAACTGAAC
CATACCACGA AGGACGGTCG CGTGCTGACG GTAGAGAGCC AAATAGAGCT CGTGCCGTTT
GGCGAGCGCC GCCTTGTGCT GGAAAGCACC CGCGACATTA CCGACCGCAA GCGCTGGGAG
CGGCGCGGGC AGCTCTTGCT GAACGAGCTA AGCCATCGCG TGAAGAACAC GCTCGCTGTC
GTCCAGTCGC TGGCGCGACA GACTCTCCGC ACAACCCGAT CGAGCGAGGA CTTCGTCGAG
CGCTTTGAAG GGCGCCTCGC GGCGCTTGCG AGCGCCCACA AGCTGCTTGT CGACTCTGAA
TGGAGCGGCG CTGAGCTCAA CGAACTCGCG CGACGGCAAC TCGATGCCTA CGCCGCCAGC
GATCGGCGCC GGCTGCAGAT CGAGGGCGAG CCAGTGACGT TGCCGCCGGA CCTCGCTACG
CCGTTCGGTC TCGTGCTCCA CGAGCTCGCG ACCAATGCCG CGAAATACGG CGCATTTTCT
ACAGGAAACG GACAGATCAA GCTCAGTTGG AAACTCGGGA ACAACGGCCG AAGCCTCGGG
GTTATCTGGC AAGAACGCGG TGGCCCGCCG GTCGAGCCGC CGAGCGAGCA GGGTTTCGGC
GGCGTTCTGA TCGAGAAGAG TTTGCCAGGA TCTACGGTTC ATCGCGATTT CCAACCGGAT
GGCGTCGTCT GCACGATCGA CATCGAGCTT CCGGAGATCC GGCCAGATGG TGGGGAAAAG
TGA
 
Protein sequence
MVQKADPPIV AIGASAGGVQ ALQTFFDLMP IDTGATFVVI VHLDPHARSE LANILAARTR 
MPVTQVEDQA RLESNHVYVI APNRRLKIAD GTIAALPFEE PHALRAPIDF FFRSLAEEHR
SEFAIILTGA GADGAIGVKA IKEADGIVLV QDPDEAEYAS MPRNAIATEV ADFVLPIREL
PHRVAELLAR RDQLPSHQFR VNDDEMIGRI VAHVRGRTGH DFSQYKRATI LRRIGRRAQV
ARRETFADYY NYLRENPEEA QALFSDFLIS VTTFFRDPSA FEVLAERVIP HLFDGKEVAD
KIRVWVPGCA TGEEAYTIGI LLLEEAARRD LSPEIQVFGS DLDEQALRIA REGRYPSTVE
GDLSEERLRR FFQREGDHYR VRRDLRDAVL FASHSLLRDP PFSHLDMISC RNLLIYLDRQ
LQQQVCNTFH YALNAGGFLF LGSSESADCP GLFRPVDREA RIYRALAGAG ARPMVLPALL
GPHKPEMKST IIRTPPAGHG SDAAVHRQML EKIAPPSMLV DESHHAIHLS ENAGRFLKPS
GGPVSTAATD LVREEFRFDL RAALHRAFGR NEPTLSMPIL ADLDGQPHRV YLQVKPVVRG
TERTRHALVL FIEGEAIDKT QEVVLDTLDG RPTIDEAIRR LQEELQLAQN RLRLTSEESD
TATEELRAAN EELQSMNEEY RSTAEELETS KEELQSINEE LQTVNNELKL KLESISRANS
DLQNLMAATD IATLFLDPSL RIKRFTPRLT EIFNVTSNDE GRPITDFTHR LQYKRLSDDA
RAVLETLKPV EHEVKGRNDG WYLVRMRPYR TIEDKIDGVV VTFVDISERR HAEEAAKESG
QRLEQEMRLV ELSRSPIFVW DFDDGVMQWN RGSEELYGYS REEALGRRKE ELLKTGVPGS
SFDKLRRTLS QKGRWSGELN HTTKDGRVLT VESQIELVPF GERRLVLEST RDITDRKRWE
RRGQLLLNEL SHRVKNTLAV VQSLARQTLR TTRSSEDFVE RFEGRLAALA SAHKLLVDSE
WSGAELNELA RRQLDAYAAS DRRRLQIEGE PVTLPPDLAT PFGLVLHELA TNAAKYGAFS
TGNGQIKLSW KLGNNGRSLG VIWQERGGPP VEPPSEQGFG GVLIEKSLPG STVHRDFQPD
GVVCTIDIEL PEIRPDGGEK