| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_5776 |
|---|
| Symbol | |
|---|
| ID | 5320078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | + |
|---|
| Start bp | 747465 |
|---|
| End bp | 750947 |
|---|
| Gene Length | 3483 bp |
|---|
| Protein Length | 1160 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640777483 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_001314415 |
|---|
| Protein GI | 150377820 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins
[COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain
[COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.491611 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0137055 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCAAA AAGCTGATCC TCCGATTGTC GCGATTGGGG CTTCCGCCGG GGGCGTCCAG
GCACTTCAGA CCTTTTTTGA TCTTATGCCG ATTGACACTG GCGCGACTTT CGTCGTCATT
GTCCATCTCG ATCCGCACGC CAGAAGCGAG CTTGCGAACA TTTTGGCGGC ACGGACGCGC
ATGCCGGTTA CGCAGGTCGA GGACCAGGCG CGTCTTGAAA GCAACCACGT TTACGTCATC
GCGCCAAACC GTCGGCTTAA GATTGCCGAC GGTACGATAG CCGCGCTCCC CTTCGAAGAG
CCGCATGCCC TCCGCGCGCC CATTGATTTT TTCTTTCGAT CGCTTGCCGA GGAGCATCGG
AGCGAATTTG CGATTATTCT CACTGGTGCC GGGGCGGACG GTGCGATTGG GGTCAAGGCT
ATCAAGGAGG CGGACGGAAT CGTGCTCGTC CAGGATCCCG ATGAGGCAGA ATATGCCTCC
ATGCCGCGCA ACGCCATCGC CACTGAGGTT GCAGACTTCG TGCTGCCTAT CCGAGAGCTT
CCTCATCGGG TGGCTGAGTT GCTCGCCCGC CGTGATCAGC TTCCGTCCCA CCAGTTCCGC
GTAAACGATG ATGAGATGAT CGGGCGAATT GTGGCCCATG TGCGCGGCCG AACCGGACAC
GATTTCTCCC AATACAAGCG GGCTACGATT TTGCGGCGTA TCGGACGGCG AGCGCAGGTT
GCCAGGAGGG AGACCTTTGC GGACTACTAC AACTACCTGC GCGAGAATCC AGAGGAAGCT
CAGGCGCTGT TCAGCGACTT TTTGATTTCG GTTACAACGT TCTTTCGCGA TCCTTCGGCT
TTCGAGGTAC TGGCCGAAAG AGTCATCCCA CACCTGTTTG ACGGAAAAGA AGTTGCCGAC
AAGATCAGGG TTTGGGTTCC GGGCTGCGCT ACCGGTGAGG AGGCCTACAC AATTGGCATC
CTTCTGCTCG AGGAGGCGGC ACGCCGCGAC CTCTCGCCGG AAATCCAGGT CTTCGGCTCG
GACCTCGACG AACAGGCACT TCGCATCGCG CGCGAGGGAC GATACCCGTC GACGGTCGAA
GGCGATCTCT CGGAGGAACG ACTTCGCCGT TTCTTCCAGC GTGAGGGAGA TCATTATCGA
GTGCGCCGCG ATTTGCGAGA CGCGGTTCTG TTTGCCAGCC ACAGTCTACT TAGAGACCCG
CCCTTCTCCC ATCTCGACAT GATTTCCTGC CGAAACCTGC TGATCTACCT CGATCGGCAG
CTGCAGCAGC AGGTGTGCAA CACGTTTCAT TACGCGCTCA ACGCAGGTGG TTTCCTCTTC
CTCGGATCGT CGGAAAGTGC TGACTGCCCC GGACTCTTCC GCCCTGTGGA TCGCGAGGCG
CGTATCTACA GGGCACTAGC GGGCGCCGGT GCTCGACCCA TGGTGCTGCC GGCGCTGCTT
GGGCCACATA AGCCGGAAAT GAAATCGACC ATTATTCGGA CGCCGCCGGC AGGGCACGGC
AGCGACGCAG CGGTACACCG CCAGATGCTC GAGAAAATCG CGCCTCCAAG CATGCTGGTT
GATGAAAGCC ACCACGCAAT TCATCTTTCG GAAAATGCCG GACGGTTTCT CAAGCCGTCG
GGAGGCCCTG TTAGTACCGC CGCCACGGAT CTCGTGCGTG AGGAATTTCG CTTCGATCTA
AGAGCAGCGC TGCACCGGGC CTTTGGGCGG AATGAACCCA CGTTGAGCAT GCCCATTCTT
GCTGACCTCG ATGGGCAGCC GCACCGGGTC TACCTGCAAG TGAAGCCTGT GGTCCGGGGG
ACGGAGCGTA CGAGGCATGC TCTTGTGCTC TTTATCGAAG GTGAAGCCAT CGACAAGACC
CAGGAGGTCG TGCTCGATAC GCTTGACGGG CGCCCGACGA TTGACGAGGC GATCCGCCGA
TTGCAGGAGG AATTGCAGCT CGCGCAAAAC CGGCTTCGCC TGACGAGCGA GGAGTCGGAC
ACTGCTACTG AGGAGTTGCG GGCTGCCAAC GAAGAGCTGC AGTCGATGAA CGAGGAATAC
CGTTCGACGG CCGAGGAACT GGAAACGAGC AAGGAAGAGC TACAATCCAT CAACGAGGAG
CTGCAAACTG TCAACAATGA GCTCAAGCTG AAGCTGGAAA GCATATCGCG CGCTAACAGC
GACCTACAGA ACTTGATGGC CGCGACCGAC ATCGCGACGC TTTTCCTTGA CCCCTCCCTG
CGTATCAAGC GGTTTACCCC GCGTTTGACG GAAATATTTA ACGTCACTTC GAACGACGAA
GGCCGGCCGA TCACTGATTT CACGCATCGC CTCCAATATA AGAGACTTTC TGATGACGCG
CGGGCGGTGC TGGAGACACT CAAGCCAGTC GAACACGAGG TGAAGGGCCG CAACGACGGC
TGGTATCTGG TGCGGATGCG CCCCTACCGA ACAATCGAAG ACAAGATAGA CGGCGTTGTG
GTCACGTTCG TCGACATCAG CGAGCGGCGC CATGCCGAAG AGGCGGCGAA GGAGAGCGGG
CAACGCCTTG AGCAGGAAAT GCGGCTTGTC GAGCTTTCGC GCTCACCGAT ATTCGTGTGG
GACTTTGACG ATGGCGTAAT GCAGTGGAAT CGCGGCAGCG AGGAACTCTA TGGTTATTCG
CGTGAGGAGG CGCTCGGAAG ACGCAAGGAA GAACTGCTCA AGACCGGCGT TCCCGGCTCG
TCCTTTGACA AGCTCAGGCG AACACTCAGC CAAAAGGGCC GTTGGAGCGG CGAACTGAAC
CATACCACGA AGGACGGTCG CGTGCTGACG GTAGAGAGCC AAATAGAGCT CGTGCCGTTT
GGCGAGCGCC GCCTTGTGCT GGAAAGCACC CGCGACATTA CCGACCGCAA GCGCTGGGAG
CGGCGCGGGC AGCTCTTGCT GAACGAGCTA AGCCATCGCG TGAAGAACAC GCTCGCTGTC
GTCCAGTCGC TGGCGCGACA GACTCTCCGC ACAACCCGAT CGAGCGAGGA CTTCGTCGAG
CGCTTTGAAG GGCGCCTCGC GGCGCTTGCG AGCGCCCACA AGCTGCTTGT CGACTCTGAA
TGGAGCGGCG CTGAGCTCAA CGAACTCGCG CGACGGCAAC TCGATGCCTA CGCCGCCAGC
GATCGGCGCC GGCTGCAGAT CGAGGGCGAG CCAGTGACGT TGCCGCCGGA CCTCGCTACG
CCGTTCGGTC TCGTGCTCCA CGAGCTCGCG ACCAATGCCG CGAAATACGG CGCATTTTCT
ACAGGAAACG GACAGATCAA GCTCAGTTGG AAACTCGGGA ACAACGGCCG AAGCCTCGGG
GTTATCTGGC AAGAACGCGG TGGCCCGCCG GTCGAGCCGC CGAGCGAGCA GGGTTTCGGC
GGCGTTCTGA TCGAGAAGAG TTTGCCAGGA TCTACGGTTC ATCGCGATTT CCAACCGGAT
GGCGTCGTCT GCACGATCGA CATCGAGCTT CCGGAGATCC GGCCAGATGG TGGGGAAAAG
TGA
|
|---|
| Protein sequence | MVQKADPPIV AIGASAGGVQ ALQTFFDLMP IDTGATFVVI VHLDPHARSE LANILAARTR
MPVTQVEDQA RLESNHVYVI APNRRLKIAD GTIAALPFEE PHALRAPIDF FFRSLAEEHR
SEFAIILTGA GADGAIGVKA IKEADGIVLV QDPDEAEYAS MPRNAIATEV ADFVLPIREL
PHRVAELLAR RDQLPSHQFR VNDDEMIGRI VAHVRGRTGH DFSQYKRATI LRRIGRRAQV
ARRETFADYY NYLRENPEEA QALFSDFLIS VTTFFRDPSA FEVLAERVIP HLFDGKEVAD
KIRVWVPGCA TGEEAYTIGI LLLEEAARRD LSPEIQVFGS DLDEQALRIA REGRYPSTVE
GDLSEERLRR FFQREGDHYR VRRDLRDAVL FASHSLLRDP PFSHLDMISC RNLLIYLDRQ
LQQQVCNTFH YALNAGGFLF LGSSESADCP GLFRPVDREA RIYRALAGAG ARPMVLPALL
GPHKPEMKST IIRTPPAGHG SDAAVHRQML EKIAPPSMLV DESHHAIHLS ENAGRFLKPS
GGPVSTAATD LVREEFRFDL RAALHRAFGR NEPTLSMPIL ADLDGQPHRV YLQVKPVVRG
TERTRHALVL FIEGEAIDKT QEVVLDTLDG RPTIDEAIRR LQEELQLAQN RLRLTSEESD
TATEELRAAN EELQSMNEEY RSTAEELETS KEELQSINEE LQTVNNELKL KLESISRANS
DLQNLMAATD IATLFLDPSL RIKRFTPRLT EIFNVTSNDE GRPITDFTHR LQYKRLSDDA
RAVLETLKPV EHEVKGRNDG WYLVRMRPYR TIEDKIDGVV VTFVDISERR HAEEAAKESG
QRLEQEMRLV ELSRSPIFVW DFDDGVMQWN RGSEELYGYS REEALGRRKE ELLKTGVPGS
SFDKLRRTLS QKGRWSGELN HTTKDGRVLT VESQIELVPF GERRLVLEST RDITDRKRWE
RRGQLLLNEL SHRVKNTLAV VQSLARQTLR TTRSSEDFVE RFEGRLAALA SAHKLLVDSE
WSGAELNELA RRQLDAYAAS DRRRLQIEGE PVTLPPDLAT PFGLVLHELA TNAAKYGAFS
TGNGQIKLSW KLGNNGRSLG VIWQERGGPP VEPPSEQGFG GVLIEKSLPG STVHRDFQPD
GVVCTIDIEL PEIRPDGGEK
|
|---|
| |