More than 300 homologs were found in PanDaTox collection
for query gene TM1040_0460 on replicon NC_008044
Organism: Ruegeria sp. TM1040



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007802  Jann_2564  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  51.61 
 
 
1089 aa  833    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008044  TM1040_0460  MCP methyltransferase, CheR-type  100 
 
 
837 aa  1715    Ruegeria sp. TM1040  Bacteria  normal  0.604812  normal 
 
 
-
 
NC_008044  TM1040_2227  MCP methyltransferase, CheR-type  56.33 
 
 
824 aa  903    Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009712  Mboo_0327  putative PAS/PAC sensor protein  35.89 
 
 
1008 aa  445  1e-123  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_008709  Ping_2549  fused CheR-type MCP methyltransferase and PAS sensor protein  34.84 
 
 
1006 aa  421  1e-116  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007355  Mbar_A2183  hypothetical protein  35.84 
 
 
980 aa  418  9.999999999999999e-116  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal  0.850093 
 
 
-
 
NC_010725  Mpop_0310  MCP methyltransferase, CheR-type  35.88 
 
 
1149 aa  418  9.999999999999999e-116  Methylobacterium populi BJ001  Bacteria  normal  0.512157  normal 
 
 
-
 
NC_011832  Mpal_2460  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  34.15 
 
 
971 aa  417  9.999999999999999e-116  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007517  Gmet_0780  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  33.9 
 
 
887 aa  414  1e-114  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_2376  signal transduction histidine kinase with CheB and CheR activity  32.63 
 
 
1407 aa  414  1e-114  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2162  MCP methyltransferase/methylesterase, CheR/CheB  33.9 
 
 
879 aa  415  1e-114  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0229  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  34.19 
 
 
1138 aa  410  1e-113  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_1703  signal transduction histidine kinase with CheB and CheR activity  33.11 
 
 
1408 aa  410  1e-113  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.433463  normal 
 
 
-
 
NC_007298  Daro_2045  CheB methylesterase:MCP methyltransferase, CheR-type  34.69 
 
 
868 aa  407  1.0000000000000001e-112  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_2264  putative PAS/PAC sensor protein  36.57 
 
 
1165 aa  407  1.0000000000000001e-112  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.620072  normal  0.0600346 
 
 
-
 
NC_008639  Cpha266_1788  putative PAS/PAC sensor protein  33.1 
 
 
998 aa  408  1.0000000000000001e-112  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1653  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  32.79 
 
 
993 aa  409  1.0000000000000001e-112  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_0372  signal transduction histidine kinase with CheB and CheR activity  34.05 
 
 
1233 aa  403  1e-111  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0314  Signal transduction histidine kinase (STHK) with CheB and CheR activity  32.71 
 
 
1399 aa  405  1e-111  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6399  signal transduction histidine kinase with CheB and CheR activity  35.1 
 
 
1361 aa  404  1e-111  Burkholderia phymatum STM815  Bacteria  normal  0.191888  normal 
 
 
-
 
NC_007908  Rfer_2355  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  36.82 
 
 
1008 aa  404  1e-111  Rhodoferax ferrireducens T118  Bacteria  normal  0.71741  n/a   
 
 
-
 
NC_013132  Cpin_7206  signal transduction histidine kinase with CheB and CheR activity  32.9 
 
 
1499 aa  397  1e-109  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4915  PAS  35.45 
 
 
1384 aa  396  1e-109  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_0905  putative PAS/PAC sensor protein  35.68 
 
 
1170 aa  399  1e-109  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.968727 
 
 
-
 
NC_007493  RSP_2229  methylesterase CheB/methylase CheR  35.68 
 
 
1170 aa  399  1e-109  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.840236  n/a   
 
 
-
 
NC_009620  Smed_4278  putative PAS/PAC sensor protein  34.19 
 
 
1027 aa  398  1e-109  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_3183  signal transduction histidine kinase  35.46 
 
 
1279 aa  394  1e-108  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3377  signal transduction histidine kinase with CheB and CheR activity  35.67 
 
 
1242 aa  394  1e-108  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_3913  PAS sensor protein  32.51 
 
 
1337 aa  394  1e-108  Pedobacter heparinus DSM 2366  Bacteria  normal  0.290527  normal  0.28306 
 
 
-
 
NC_013173  Dbac_1410  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  33.42 
 
 
1120 aa  392  1e-107  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.132886  n/a   
 
 
-
 
NC_010803  Clim_1600  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  33.1 
 
 
1000 aa  390  1e-107  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3046  hypothetical protein  34.03 
 
 
1010 aa  390  1e-107  Saccharophagus degradans 2-40  Bacteria  normal  hitchhiker  0.00164382 
 
 
-
 
NC_008609  Ppro_3165  signal transduction histidine kinase with CheB and CheR activity  35.44 
 
 
1306 aa  390  1e-107  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_1840  MCP methyltransferase, CheR-type  32.2 
 
 
840 aa  391  1e-107  Psychromonas ingrahamii 37  Bacteria  normal  0.59391  normal  0.603716 
 
 
-
 
NC_008709  Ping_3128  MCP methyltransferase, CheR-type  32.33 
 
 
840 aa  389  1e-106  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3102  signal transduction histidine kinase with CheB and CheR activity  33.96 
 
 
1418 aa  385  1e-105  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_0399  MCP methyltransferase, CheR-type  31.44 
 
 
820 aa  384  1e-105  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_013205  Aaci_0673  signal transduction histidine kinase with CheB and CheR activity  32.5 
 
 
1215 aa  380  1e-104  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_5571  signal transduction histidine kinase with CheB and CheR activity  31.72 
 
 
1218 aa  382  1e-104  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.273526  normal 
 
 
-
 
NC_010086  Bmul_3193  signal transduction histidine kinase with CheB and CheR activity  33.7 
 
 
1380 aa  378  1e-103  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.112764 
 
 
-
 
NC_010580  Bind_3835  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  33.63 
 
 
1167 aa  377  1e-103  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1118  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  35.12 
 
 
852 aa  379  1e-103  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.742809 
 
 
-
 
NC_008752  Aave_2417  signal transduction histidine kinase with CheB and CheR activity  33.62 
 
 
1535 aa  379  1e-103  Acidovorax citrulli AAC00-1  Bacteria  normal  0.117494  normal 
 
 
-
 
NC_010505  Mrad2831_4430  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  34.61 
 
 
1158 aa  379  1e-103  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_008789  Hhal_1716  MCP methyltransferase, CheR-type  32.78 
 
 
856 aa  373  1e-102  Halorhodospira halophila SL1  Bacteria  normal  0.92135  n/a   
 
 
-
 
NC_010322  PputGB1_3018  signal transduction histidine kinase with CheB and CheR activity  33.46 
 
 
1371 aa  375  1e-102  Pseudomonas putida GB-1  Bacteria  normal  normal  0.980757 
 
 
-
 
NC_007514  Cag_0563  putative PAS/PAC sensor protein  31.92 
 
 
1035 aa  374  1e-102  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_4639  signal transduction histidine kinase with CheB and CheR activity  32.02 
 
 
1453 aa  370  1e-101  Haliangium ochraceum DSM 14365  Bacteria  normal  0.432269  normal 
 
 
-
 
NC_013440  Hoch_3250  signal transduction histidine kinase with CheB and CheR activity  33.63 
 
 
1348 aa  372  1e-101  Haliangium ochraceum DSM 14365  Bacteria  normal  0.534329  normal  0.0270765 
 
 
-
 
NC_008751  Dvul_2487  signal transduction histidine kinase with CheB and CheR activity  33.46 
 
 
1535 aa  372  1e-101  Desulfovibrio vulgaris DP4  Bacteria  normal  0.162467  normal  0.455724 
 
 
-
 
NC_010581  Bind_0707  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  32.75 
 
 
1190 aa  367  1e-100  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_5709  MCP methyltransferase, CheR-type  33.29 
 
 
853 aa  366  1e-100  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.729466 
 
 
-
 
NC_009621  Smed_5776  putative PAS/PAC sensor protein  31.9 
 
 
1160 aa  365  2e-99  Sinorhizobium medicae WSM419  Bacteria  normal  0.491611  normal  0.0137055 
 
 
-
 
NC_007484  Noc_1601  CheB methylesterase, CheR methyltransferase, hybrid histidine kinase  31.36 
 
 
1222 aa  364  3e-99  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.472526  n/a   
 
 
-
 
NC_013440  Hoch_3278  signal transduction histidine kinase with CheB and CheR activity  33.08 
 
 
2468 aa  363  8e-99  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0267066 
 
 
-
 
NC_013440  Hoch_1404  signal transduction histidine kinase with CheB and CheR activity  33.5 
 
 
1759 aa  362  1e-98  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_5176  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  33.87 
 
 
1404 aa  361  3e-98  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.190634 
 
 
-
 
NC_008255  CHU_1237  chemotaxis response regulator (methyltransferase)  32.41 
 
 
1618 aa  358  2.9999999999999997e-97  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1500  Signal transduction histidine kinase (STHK) with CheB and CheR activity  31.76 
 
 
1483 aa  356  1e-96  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_4422  signal transduction histidine kinase with CheB and CheR activity  32.38 
 
 
1274 aa  355  2.9999999999999997e-96  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.381764  normal 
 
 
-
 
NC_014230  CA2559_12648  Signal Transduction Histidine Kinase (STHK) with CheB and CheRactivity  31.77 
 
 
1200 aa  350  7e-95  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_007961  Nham_4605  MCP methyltransferase, CheR-type  32.48 
 
 
1092 aa  349  1e-94  Nitrobacter hamburgensis X14  Bacteria  normal  0.315944  n/a   
 
 
-
 
NC_013440  Hoch_5252  signal transduction histidine kinase with CheB and CheR activity  33.37 
 
 
1698 aa  349  1e-94  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4696  signal transduction histidine kinase with CheB and CheR activity  33.46 
 
 
1214 aa  347  4e-94  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3390  MCP methyltransferase, CheR-type  36.99 
 
 
617 aa  346  1e-93  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5237  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  32.13 
 
 
1324 aa  340  4e-92  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.395635 
 
 
-
 
NC_008044  TM1040_1028  signal transduction histidine kinase with CheB and CheR activity  30.41 
 
 
1248 aa  333  6e-90  Ruegeria sp. TM1040  Bacteria  normal  normal  0.507304 
 
 
-
 
NC_011004  Rpal_3739  MCP methyltransferase, CheR-type  33.03 
 
 
1045 aa  332  1e-89  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010508  Bcenmc03_1302  signal transduction histidine kinase with CheB and CheR activity  31.36 
 
 
1220 aa  331  3e-89  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.772751 
 
 
-
 
NC_010725  Mpop_1297  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  31.53 
 
 
1168 aa  325  3e-87  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009467  Acry_3169  signal transduction histidine kinase with CheB and CheR activity  39.66 
 
 
1445 aa  319  1e-85  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3755  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  31.94 
 
 
1063 aa  316  9.999999999999999e-85  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_6211  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  32.49 
 
 
1061 aa  315  1.9999999999999998e-84  Methylobacterium sp. 4-46  Bacteria  normal  0.820077  normal  0.703655 
 
 
-
 
NC_007908  Rfer_3013  MCP methyltransferase, CheR-type  29.54 
 
 
877 aa  312  2e-83  Rhodoferax ferrireducens T118  Bacteria  normal  0.404945  n/a   
 
 
-
 
NC_007953  Bxe_C0521  multi sensor hybrid histidine kinase  31.6 
 
 
1344 aa  308  3e-82  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B1520  signal transduction histidine kinase (STHK) with CheB and CheR activity  30.69 
 
 
1303 aa  289  1e-76  Burkholderia xenovorans LB400  Bacteria  normal  0.124967  normal 
 
 
-
 
NC_002977  MCA1246  methyltransferase CheR, putative  35.62 
 
 
1378 aa  281  3e-74  Methylococcus capsulatus str. Bath  Bacteria  normal  0.271052  n/a   
 
 
-
 
NC_010623  Bphy_5175  MCP methyltransferase, CheR-type  28.87 
 
 
823 aa  271  2.9999999999999997e-71  Burkholderia phymatum STM815  Bacteria  normal  normal  0.367936 
 
 
-
 
NC_013730  Slin_1989  MCP methyltransferase, CheR-type with PAS/PAC sensor  31.15 
 
 
1110 aa  265  3e-69  Spirosoma linguale DSM 74  Bacteria  normal  0.175442  normal  0.013335 
 
 
-
 
NC_010814  Glov_2975  diguanylate cyclase with PAS/PAC sensor  32.87 
 
 
1084 aa  264  4.999999999999999e-69  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0566  MCP methyltransferase, CheR-type with PAS/PAC sensor  32.45 
 
 
1193 aa  258  4e-67  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_3990  MCP methyltransferase, CheR-type  36.92 
 
 
432 aa  251  4e-65  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5191  CheB methylesterase:MCP methyltransferase, CheR-type  29.44 
 
 
813 aa  249  1e-64  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_0433  MCP methyltransferase, CheR-type with PAS/PAC sensor  31.96 
 
 
618 aa  231  3e-59  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013132  Cpin_3640  MCP methyltransferase, CheR-type with PAS/PAC sensor  29.08 
 
 
1303 aa  226  1e-57  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.581797 
 
 
-
 
NC_010510  Mrad2831_6264  MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor  35.96 
 
 
1163 aa  224  4.9999999999999996e-57  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_03023  methyltransferase  32.78 
 
 
604 aa  223  8e-57  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.361036  n/a   
 
 
-
 
NC_009622  Smed_6341  putative PAS/PAC sensor protein  32.02 
 
 
629 aa  211  5e-53  Sinorhizobium medicae WSM419  Bacteria  normal  0.433344  normal  0.230755 
 
 
-
 
NC_008789  Hhal_0370  protein-glutamate O-methyltransferase  39.62 
 
 
639 aa  210  7e-53  Halorhodospira halophila SL1  Bacteria  normal  0.181962  n/a   
 
 
-
 
NC_011884  Cyan7425_3121  MCP methyltransferase, CheR-type with PAS/PAC sensor  37.26 
 
 
617 aa  181  4e-44  Cyanothece sp. PCC 7425  Bacteria  normal  0.0152355  normal  0.805919 
 
 
-
 
NC_014248  Aazo_0227  MCP methyltransferase  35.53 
 
 
631 aa  180  1e-43  'Nostoc azollae' 0708  Bacteria  normal  0.993793  n/a   
 
 
-
 
NC_008576  Mmc1_2635  CheB methylesterase  43.4 
 
 
262 aa  175  2.9999999999999996e-42  Magnetococcus sp. MC-1  Bacteria  normal  0.177706  normal 
 
 
-
 
NC_009622  Smed_6342  CheB methylesterase  33.91 
 
 
336 aa  156  2e-36  Sinorhizobium medicae WSM419  Bacteria  normal  0.582664  normal  0.191496 
 
 
-
 
NC_008576  Mmc1_2113  MCP methyltransferase, CheR-type  27.89 
 
 
565 aa  155  2e-36  Magnetococcus sp. MC-1  Bacteria  normal  0.982588  normal 
 
 
-
 
NC_010506  Swoo_1962  MCP methyltransferase, CheR-type  31.37 
 
 
279 aa  154  5.9999999999999996e-36  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0162659  normal  0.0775956 
 
 
-
 
NC_009637  MmarC7_0177  protein-glutamate O-methyltransferase  31.08 
 
 
270 aa  152  3e-35  Methanococcus maripaludis C7  Archaea  normal  normal 
 
 
-
 
NC_007355  Mbar_A0983  chemotaxis protein methyltransferase  29.23 
 
 
302 aa  151  4e-35  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_009634  Mevan_0259  protein-glutamate O-methyltransferase  32.27 
 
 
279 aa  148  4.0000000000000006e-34  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_009975  MmarC6_1725  MCP methyltransferase, CheR-type  31.75 
 
 
270 aa  148  5e-34  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_009712  Mboo_1581  protein-glutamate O-methyltransferase  31.14 
 
 
269 aa  146  2e-33  Candidatus Methanoregula boonei 6A8  Archaea  normal  0.175681  normal  0.125652 
 
 
-
 
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