| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1404 |
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| Symbol | |
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| ID | 8543786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | + |
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| Start bp | 1885536 |
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| End bp | 1890815 |
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| Gene Length | 5280 bp |
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| Protein Length | 1759 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 646386116 |
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| Product | signal transduction histidine kinase with CheB and CheR activity |
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| Protein accession | YP_003265851 |
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| Protein GI | 262194642 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAACCG CAGAACAGCT CGAACTCGTG GTCGGAGTTG GTGCCTCGGC CGGGGGCCTC
GCGGCGTTCA AGCAACTGTT CGCAGCGCTG CCTGCCGATA GTGGCATGGC TTTTCTCCTG
GTCCAGCACC TCGACCCGAC GCACAAGAGT CTGCTGGCCG AATTGCTGGC CCCCCATACG
AGGATGGCCG TGCGCGACGC CGATCAGGGG GCCGCGCTCG AGCCGAACAC CGTGTACATC
ATTCGGCCCG ATACGGCGCT CGCGGTGCGA AGCGGCAGAA TCGAGCTATC ACCTCCGACC
TTGCACCGCG GGGTGCGGCT ACCCGTCGAC CATCTGTTCC GTTCTCTCGC GAACGAGTAC
GGTGGGCGTT CCGTCGGCAT CGTGCTTTCC GGGGCTGGGA GCGACGGGAG CGCTGGCATC
CGCGACATCA AGGCCAAGGG CGGCCTCATC ATCGCACAGG AGCCTGAATC GAGCGGCTAC
CGCGGCATGC CTCAAAGCGC CATCGACACC GGCGTGGTCG ATCTCGTGTT GGAGATCTCC
GATATGCCAG CAGCCCTGAG GCGCTTTGCC GCGCTGCCGG CCACTCCGCG ACTCGACGCC
CAGGCGAATG CGGACGACAT CGGCGAGCGC ACGGAGCAAT ATGCGGGCCT TGGCAAACAG
GCATTCGGAC GATTGGCCGC CATACTCGAA GCGCAGTCGA GCTTCAACTT GAGGGTTTAC
AAGCACGCAA CCGTCGAGCG CCGCGTGCTC CGACGCGTGG CCCTCTCCGG TTTCAACGCC
ATAGAGCCCT ACCTGGAGCA TCTGCGCTTC GATTCGGCCG AGCAGCAGAC GCTGGTACGG
GAGTTCCTCA TCAGCGTGAC CGAATTCTTC CGCGATCCGG CCGCGTTTCG CGTCCTGCGC
GAGACGGTCA TCGAGCCCAC CGTCGCAGCC GCGACAGCAG GCAGCACGCT GCGAGCATGG
GTCGCTGGCT GCGCTACCGG CGAAGAGGCC TACTCCATCG GCATGGAGTT TTTCGACTGC
ATCTACGCCC ACAACAAACG GCTTGGTCTC CAGATCTTCG CCACGGATGT CGACCAGGAA
GCGCTGGCAT TCGCCCGCGC CGCGAGCTAC CCGCCATCGA TCAGCGAACG CGTCTCGGCG
CAGCGTCTGC AGACGTACTT CAAGCCGCAC CTCGGCAAGG GCTACCAGGT CCGCCAGCCT
CTCCGCGACG CGGTCTCGTT TGCCATGCAG GACCTCACCA AGGATCCGCC ATTTTCGCGG
ATGAACCTGG TGAGTTGCCG CAACGTGATG ATTTATCTGA CCTCAGAAGC ACAGAGACAC
GTGCTCAACA TGTTGCACTT CGCCCTGGAG CCCGATGGGT TCCTCTTTCT GAGCACCTCG
GAATCAACCG GGCCTCGGCG AGAGCTTTTC TCGACGATCT CCAAGGACCA GCGCATCTAT
CGCAAGCGCG GAGCGTCACG CGCGAGCATC GCGTCACGCT CACTGGATAC GCCGGTTCAA
GACACCGATT TGTATTCGAG AACAAGGAAT ATTCGCCCGT CGGATGGGCT GAGCCAGACC
GGCGGGGACC TGGCCCGGCG CGCCGTGCTC GCTGCGGTCG CGCCACCGAC CTTGGTCATA
TCCGAGGACG GTTCCGTGCT GTTTTCCCAC GGCGAACTCG GCCCGTACAT ACGCATTCCC
GAAGGAGATA ACCCGCGATT CGAGCTCAAC TCGGTGCTGC GTCCAGAGCT CGCCACCCGG
GTACGGGGCG TGCTCCACAG ATGCCGTCGG GAGAAGCAAG CGCAGTTCGC GCTATCGAGC
CCCAATGGGG ACGCGTTGCG CGTTCGCATC GGCGCCCGTC TCGCCCCCTC CCTCGGAAGC
GACGTGGTGA TTCTCACCTT CGAAGCGCTT CCGGAGGAAA CGGCAGTCAC CATCGCGGAG
CGCCCCGAGA GGCCGGAGCA AGACGTGCTC GTCGAGCAGC TCGAAAGCGA GTTGCAGGCC
ACCCGTGAAG ATCTTCGCAC CACTGTGGAG GAGCTCGAGA CCTCGATCGA GGAGCTGCGT
TCTTCGAACG ACGAGTCGAT GTCGATAAAC GAGGAGCTGC AGTCGGCCAA CGAAGAGCTG
GAAGCCACCA CCGAAGAGTT GCGCTCTCTC AATGAGGAGC TGACCATCGT CAATGCGCAG
TTACAAGAGA AGGTCGAGCT GGTCGAGCTG GCGCACGACG ACCTCAACAA CTTCTTCTCG
AGTACGAAGA TCGCCACCGT CTTTCTCGAC GGGCGCTTAT GCATCAAGCG TTTCACCCCA
GCGGCGCAGC AGCAGCTCGG CATCGACCAC GCCGACACCG GCCGTTTCGT GGGGAACATT
GCCAGAGAGC TATTGCAGCA CGATCTGGCA CAGGACGCCG AATCGGTGCT CGACCACCTG
AGGGTGGAGT CGCGAGTCAT GCGCACGACG GACGGTCGGT GCATCACGCG TCAGGCGCTG
CCATACCGAA CAGAGAACCG ACGTATCGAG GGCGTGGTGG TCACGTTTAC CGACGTGACC
GAGCTGAGCA ACGCGAACGA GGAGCTCGCA ACCAGGACAC AGCGCCTCGA GCTGGCATGG
GAGGTCGCGC GCGGCGGTGT CTTGGAGCAT CGGCTCCCGC TCGACGAGTC GACCTATATC
AGTGATCAGT GGGCCCAGGT ATTCGGTTAT CGGCTCGATG AACTGCCGAG CTACGAGCGG
CTTCTGCCGT GGCTGTTCGA GCAGGCACAT CCCGACGATC ACGGGCGATT CGAGCAGAGC
TACCAGAATC TCATCGAGGG TAAGAGCGAG CGCTATGTCA TCGAGCTGCG CTTCCGCCAC
AAGGGCGGTC ACTGGCTCTG GGTTCGCGAA ATCGCAAAGA TACTCGAGCA CGACGAGCTG
GGGCGAGCGC GACATCTGCT GCGCATGATG ATCGACATCA CCGACCTCAA GGAGGCCGAG
GCGTCGCTCA GGGAGAGCGA GCTTCGTTTC CGCGAAATGG CAGATGGATT GCCGCTCATG
GTATGGGTCC ACAATGCAGA TGGAGATCTG GAGCTGGTCA ATCAGACATT CTGCGAGTAC
TTTGGCGTCA AGCGCGACGT GATGAAGGGC GGGCGGTGGC AGATACTTGT GCATTCTGAT
GATGCCGATT CTTATACGCG CGAGTTCTAT GCCTGCATCA ACGACAAGAG GCCGTTCCAT
GCCGAAGCGC GCGTCAAGCA CGCCGACGGC ACCTGGCACT GGATCGAATC GTGGGGAAGA
CCGAGGCTGG GCCCTGAGGG ACAGTTTCGC GGCTTCGTCG GCACCAGCGC GGATATTACT
GCGCGGCGTG AGATGGAAAT GGCGCTGCGT ACCAGCAGGC GAAACGAATC GCAGCAGCGG
CAGTTTCTGG AAACCTTGCT TGAAAACGCC AAGGTGTGTG TTGCCGTCAT GGAAGGGGAC
GAGCTGCGTT ATACGCTAGT CAATCGTGCG TATCAGAATC TCCGACCCGA TGTGTCGATG
GTCGGCCGTA CCGTTGCGGA AATCTTTCCC GAGGCAGTCG CCGTCGGGGT CGATAACGAT
CTGCGGCAAG TTCTGCACAC CGGGGAGATG CAAGTGCAGT ATGGATATCA TGCGCCAGTC
CCCGGTAGGC TTGATGCGCG CTGGGATCAT CAAGTCGTGC GCCTCCCTGA ATCGGAAGGA
CGTGCACGGT CCGTGCTGCT GATTACCTGG GAATCTACGG AGCATTACCG AACACAAGGG
GCTCTACGCG AGAGCGAACA GCGGCTGCAG ATCGCCAAGG ATGCGGCCGG CTTCGGCGTC
TATGCGTACG ACATCGTCTC AGGCGGCATC TCATGGGACG AACGGGTTCG CTCGATCTGG
GGTGTTTCCG CCGATGAGCC TCTTAGCTAC GAGCTATTCC TGAGCGGCGT GCATCCCGGC
GATCGCGTCG TCGTGGAGGC GGCGCTCGAG CGCGCCTGCG ACCCCGGTGG AAACGGCCAC
TATCGAGCCG AATACCGCAT CATCAATCGT CACGACGGCA AGACCTACTG GGCTTCCTCG
ACCGGATTTG TGGAGTTCAT CGATGGCGAG GCCGCGCGAC TCGTCGGTGC CGTGCAGGAT
GTCACCGTTG AGAAGGACGC CAAGGCCGCC CTGTTGGCGA GTCAAATGAG CCTGCAGGAG
GCCGATCGAC AGAAGGACGA GTTTCTCGCA ATGCTCGGGC ACGAGCTTCG CAATCCACTG
GCGGCGATTC GGACGGCTTC CGAACTGCTG AGGCGCAAGC TTGGCGGCAA TCCGGAGTTC
ACCAGGATGC AGGAGGTGCT CGATCGCCAG ACCCTCCATA TGGCCAAGCT CCTCGACGGC
CTGCTCGACA TTTCGCGCAT TATCCGCGGC AAGATCCGGC TTGAGTCGGA GTTGTTGGAT
CTGCGAAAGA TCGTTCGTGA GGTGACGAGC GACCTTAGGG AGGGGATGAC AGATCGCCAG
CTCGAGATAC GTGCCGACAT TCCACCGGAG CCTTTGCTGG TAGAGGCGGA TCGGGTTCGT
CTGGCGCAGA TCGTCAACAA CTTGCTCTCC AATGCGGTCA AGTACACCCC AGATGGTGGG
GCGATTCACA TTACGCTCAG TCACGATAGC GGAGATGGCA CGGTTGTGTT GGAGGTGAAG
GATACAGGTG TGGGGATTGA GGCCGAGCTT CTTCCCCACG TGTTCGAAAT CTTCCGTCAG
TCGAAGCAGA GCATCGACCG TTCCGCGGGG GGGCTTGGCC TCGGTTTGGC CCTGGTCAAA
ACCCTGGTCG AGCGCCAAGG TGGCAGCGTT GAGGCGAGAA GCGAAGGTCC AGGAGCAGGC
GCCGAATTCT CGGTCAAATT TCCGCTGAGT CACGCACCGA GTCCGAGCTT GCTCGAAGGT
GGCGAGACGA GCGATGGCAA GCTTCGTATT CTTCTCATCG AGGACAACGA GGATGCCGCC
GAGATGCTCA AGCAGCTCCT CGAGCTGGCG GAGCACGAGG TAACGCTCAC GTACCGGGGC
AAGACGGGCC TCGCCCTCGC GCGTGAGCTG CGACCGGACG TCGTCTTATG TGATCTCGGA
CTCCCCGACG GCGTGAGCGG ATTTGATGTT GCGCGCGAGC TTCGTTCCGA TAAAAGCCTT
GCGGGTCTAG GATTGATCGC TCTCTCTGGC TATGGGCAGC CCGAAGACAA GGAGAAGGCT
GCCGAGGCTG GCTTCGATGC CCACCTTATC AAGCCGATCG ATATGGCATC GCTCGAGCGC
GTACTCGCGA ACATCGTCCC GTTCAGAAAT CCGAGCGACG GTTCCCCAGC CCCCTCATGA
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| Protein sequence | MRTAEQLELV VGVGASAGGL AAFKQLFAAL PADSGMAFLL VQHLDPTHKS LLAELLAPHT
RMAVRDADQG AALEPNTVYI IRPDTALAVR SGRIELSPPT LHRGVRLPVD HLFRSLANEY
GGRSVGIVLS GAGSDGSAGI RDIKAKGGLI IAQEPESSGY RGMPQSAIDT GVVDLVLEIS
DMPAALRRFA ALPATPRLDA QANADDIGER TEQYAGLGKQ AFGRLAAILE AQSSFNLRVY
KHATVERRVL RRVALSGFNA IEPYLEHLRF DSAEQQTLVR EFLISVTEFF RDPAAFRVLR
ETVIEPTVAA ATAGSTLRAW VAGCATGEEA YSIGMEFFDC IYAHNKRLGL QIFATDVDQE
ALAFARAASY PPSISERVSA QRLQTYFKPH LGKGYQVRQP LRDAVSFAMQ DLTKDPPFSR
MNLVSCRNVM IYLTSEAQRH VLNMLHFALE PDGFLFLSTS ESTGPRRELF STISKDQRIY
RKRGASRASI ASRSLDTPVQ DTDLYSRTRN IRPSDGLSQT GGDLARRAVL AAVAPPTLVI
SEDGSVLFSH GELGPYIRIP EGDNPRFELN SVLRPELATR VRGVLHRCRR EKQAQFALSS
PNGDALRVRI GARLAPSLGS DVVILTFEAL PEETAVTIAE RPERPEQDVL VEQLESELQA
TREDLRTTVE ELETSIEELR SSNDESMSIN EELQSANEEL EATTEELRSL NEELTIVNAQ
LQEKVELVEL AHDDLNNFFS STKIATVFLD GRLCIKRFTP AAQQQLGIDH ADTGRFVGNI
ARELLQHDLA QDAESVLDHL RVESRVMRTT DGRCITRQAL PYRTENRRIE GVVVTFTDVT
ELSNANEELA TRTQRLELAW EVARGGVLEH RLPLDESTYI SDQWAQVFGY RLDELPSYER
LLPWLFEQAH PDDHGRFEQS YQNLIEGKSE RYVIELRFRH KGGHWLWVRE IAKILEHDEL
GRARHLLRMM IDITDLKEAE ASLRESELRF REMADGLPLM VWVHNADGDL ELVNQTFCEY
FGVKRDVMKG GRWQILVHSD DADSYTREFY ACINDKRPFH AEARVKHADG TWHWIESWGR
PRLGPEGQFR GFVGTSADIT ARREMEMALR TSRRNESQQR QFLETLLENA KVCVAVMEGD
ELRYTLVNRA YQNLRPDVSM VGRTVAEIFP EAVAVGVDND LRQVLHTGEM QVQYGYHAPV
PGRLDARWDH QVVRLPESEG RARSVLLITW ESTEHYRTQG ALRESEQRLQ IAKDAAGFGV
YAYDIVSGGI SWDERVRSIW GVSADEPLSY ELFLSGVHPG DRVVVEAALE RACDPGGNGH
YRAEYRIINR HDGKTYWASS TGFVEFIDGE AARLVGAVQD VTVEKDAKAA LLASQMSLQE
ADRQKDEFLA MLGHELRNPL AAIRTASELL RRKLGGNPEF TRMQEVLDRQ TLHMAKLLDG
LLDISRIIRG KIRLESELLD LRKIVREVTS DLREGMTDRQ LEIRADIPPE PLLVEADRVR
LAQIVNNLLS NAVKYTPDGG AIHITLSHDS GDGTVVLEVK DTGVGIEAEL LPHVFEIFRQ
SKQSIDRSAG GLGLGLALVK TLVERQGGSV EARSEGPGAG AEFSVKFPLS HAPSPSLLEG
GETSDGKLRI LLIEDNEDAA EMLKQLLELA EHEVTLTYRG KTGLALAREL RPDVVLCDLG
LPDGVSGFDV ARELRSDKSL AGLGLIALSG YGQPEDKEKA AEAGFDAHLI KPIDMASLER
VLANIVPFRN PSDGSPAPS
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