| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5176 |
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| Symbol | |
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| ID | 8228786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 6240723 |
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| End bp | 6244937 |
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| Gene Length | 4215 bp |
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| Protein Length | 1404 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644933026 |
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| Product | MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor |
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| Protein accession | YP_003089540 |
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| Protein GI | 255038919 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins
[COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.190634 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTATCCGG AATCCGGAAT GGCCTATGTG GTGATCCTGC ATCTTTCTCC CGATTACGAA
AGCCACCTGG CCAATGTACT GAGGCAGGTC GCGCAAATTC CGGTCGTGAA GGTGGAAGAG
GACATGTCTA TCGCAACCGA CCACATTTAC GTGGTTTCGC CAAACCAGCA TCTGCGAATG
CTGGACGGCA CTATTACCGT TTCTCAAAAT ATGCATATCG AAGACCGCAG GGCGCCGGTT
GATATTTTTT TCAGAACCCT GGCAGAGTCT CACGGCCCGC ACGCGATCGC CGTTGTACTT
TCAGGGACCG GTGCCAACGG CTCGATGGGT GTTAAGCGGA TCAAGGAAAA TGGCGGGGCC
ATATTTGTCC AAAACCCCAA AGAAGCACTA TTTAATGAAA TGCCGCGCCA TACAATCGCT
ACTGATCTGG TAGACGGCAT CCTCTCGGCA TCTGAAATCC CGGCCCGGTT ACGCGAGTAT
CGCGACAGCC TGCATACGGT CTCTATCCCG GCAGAAGCGC GCATGCGGCC CGAGGAGCAG
CAGCAAGCCC TGCGCGAGAT CTTCACCCAC CTCAGGCTGC GCACCGGCCA TGATTTTTCC
AATTACAAAA GGCCAACGCT TATGCGCCGG CTCGAACGCA GGATCAGCGT CAGAAACCTG
GATGGCCTGC CTGCTTACGC GGGCTATTTA CGCGAGAATC CCGAGGAAAG CAGGGCATTG
TTGAAGGATT TACTCATTTC CGTGACCAAC TTCTTTCGCG ATGGAAGGGT GTTTTCGGCT
TTGGAAGAGG ACATATTGCC GCGTCTCATT CGCGAGCGGA AATCGGACGA ATCTATCCGG
ATTTGGGTGA CAGCCTGCGC CACAGGAGAA GAAGCGTATT CGATCGCGAT GCTGATGGCA
GAACTGACTT TCGGCGTCAT AGACGCGCCC AAAGTACAGA TTTTCGCTAC CGATATCGAC
GAAGGAGCCA TTATCACGGC CCGGGAAGGC AAGTACACGA TCAACGATGC CGCCGACATC
TCTCCTGAAC GACTGCAGCG CTTCTTTGTC CGCGAAGGCG ACGAATACCG TGTCCGCCAG
GAAATTAGGG AAATGATCCT TTTCGCCCAT CAGAATGTGC TCAAAGACCC TCCATTCTCA
CGGCTTGACC TGGTAACTTG CCGAAATCTG CTGATTTATC TCAACCAGGC TGCGCAAGAA
CGCGTGATGG AGACTTTCCA TTTTGCATTG AAGCCCGGCG GCTATCTGAT GCTGGGGCTT
TCCGAAACGA CCGACAGCGC TGGTGATCTG TTTGCCAATA TCAGCCGTGA ATACCATATT
TATCAAAGCA GGCCGGTTGC GATCCGTCCC TATCCCGTCC CGGAAAACAC ACCGCTGGCC
ATACCCCAGA AACGGCACGA GCCCGTGGCA GTTTCCAGCA GCGAAAGCCG GCATCTCAGC
GAAAGGGCCA ATTTCGGGGA CCTGCATCAC CAGTTGATTG AGCAATATGC GCCGCCTTCC
ATCATTGTAA ATGAGGAATA TGATATTCTT CACCTGTCGG GCAAGGCAGG CAGATATGTG
CATATTTTCG GCGAACCGTC CAAAAACCTC CTGAAACTCG TCAGGCCCGA ATTGCGCCTT
GAACTGCGCA CAGCATTGTA TCAGGCCGTT CAAAGGCAAA CCAACGTGGA AGCCCGCAAT
CTGCGGGTGC AGATCGAAGA CAAGACCGAA GTCATTAACC TCCACGTACG CCCGGTAGTG
GAGGATGGCA GCCAGTCACG CAATAACCCG GCACAGGGTT TGATCCTCGT CCTTTTTGAA
CCAACCGATA CGCCGGAAGG CCCCATTAAG AGTGTGCTCA CCTCCGAAGA GCCCATGGCG
CAGCAGCTGG AAGCCGAGCT AATGCACGTC AGGACGCAGC TGCGCTCGGC CGTAGAGCAG
CATGAGACGC AGGCCGAGGA GCTCAAAGCC TCCAACGAGG AATTGCAGGC CATGAACGAG
GAGCTCCGCT CAGCGGCCGA AGAACTCGAA ACGAGCAAGG AAGAGTTGCA GTCGATCAAC
GAAGAGCTGA CGACGGTGAA CCAGGAGTTG AAGGTAAAAG TGGAAGAAAT ATCCATGACC
AGCAACAACT TCCAGAACCT GATCAACTCG ACTGATCTCG CGACATTGTT TTTAGACCGC
AGCCTGCGCG TCAACCTCTT CACCCCCGCG GCAAGATCTA TTTTCAACCT GATCCCTACG
GACAGCGGCC GGCCGTTGAG CGACATCACC AACTCACTCG ATTACAGCGG CTTGCAGGAA
GATGCCCGCA AAGTACTCGA AACGCTGCTG CCAGTAGAGC GTGAGGTGCA AACGCACGAC
CAGCGTGTTT TCCTCACGCG CATTCTCCCC TACCGCACTG CCGAGGACCG GATCAACGGC
ATCGTGCTCA CATTTGTGGA TATTACAAGG CGAAAAGCAG CAGAAGAAGC CGTGAGGCGA
TCCGAGGAGC GGATGCGGCT GGTATTTGAA AGCGCCAAGG ACTATGCTAT CCTGACGCTT
GACCTGAAAA GGCAGGTAAC CAGTTGGAGC CCCGGTGCGC AAGCGATGAC GGGCTTCACC
GAAGCGGATA TTCTCGGGCA GCCAGGGGAC ATCCTGTTTA CGCCCGAAGA CCAGGAGAGC
GGCCAGCCCG CTTTGGAAGA AAAGATAGCC CGCGAAAACG GGCACGCCGA AAACGAGCGC
TGGCATGTGC GCAAAGACGG CAGCCGGTAC TGGGGCTCCG GTTCAATGTC ACCTTTGAAG
GATGATGATG GTAAAGTGCT GGGATGGGTT AAGATCATGC GTGACCTCAC CGAGCGCCGC
GCCGCCGAAG AAGCACGCTC GTTTCTCGCT GCCATTGTCG AATCATCGCA GGATTCTATC
ATGACCGTCA ACTTTGACGG CATTATCACC AGCTGGAACA AGGCAGCCGA AGATCTCTAT
GGCTATTCCG CAGCCCAGGC GATCGGTAAG CCACTGACTA TGCTCACACT CCCGGAAGAC
CTGGCCCGCG TGCTCAGCGA CACCGATAAA ATCAAGCACT CGCAACGCGT CGAAATTTTC
GATACGATCC GCGTAAATAA AGATGGGCGC GAAATGCATT TGGAGGTCGT CATGTCGCCT
GTTAAAGATG CTTCCGGCAG GCCGATCGGT GTATCGACGA TTGCGCGCGA TATCACGATG
AGGAAGCTGG CCGAACATGA GCAAGCCCTC AAGAACCTCA CTTTGCAACA GCAAACCGAA
TCCATGGCCC GCACCGGAAG CTGGGAATAC GACCGGATAA CGGGCAATTT CAGTTGGTCG
GAAGGCATGT ACCAGCTTTT CGGACTGCCG ATCGGTAAAC CAGTGCAGCC GGATGTATAT
CTTCAAAAAA CCGTCAGACC CGATCAGCAC ATCGCGGAAG CGTTCATTGA ATGGCTTGAA
AGCGGTGAGC AGGCTTTCGA GCAGGTGTTA CGCATTCACC ATTTAGAAAC GGTCAAGTAT
CTCAAAATAA AAGGGGTACC CCTGCCCTCG CAGGACGAGG TTTCTCAAAA AATGCTGGGT
ATCGATTGGG ACATTACGGA TCACATTCTC GCTCAGGAGC AGCTACGGCA AAGTGAAGCC
CAGCTCAGAA CGCTCGTTGA AAACACCCCG GACGTGATCA CGCGTTGGGA CAGCGACCTC
AGGCTTATTT TCGCGAATAA TGCTTTTGTA GTCAAAACCG GGCAGCAGCT TGAAGATTTA
TTGGGTAAAA ACAATATTCA GATGGGCCAG CCCGACGATA TTGCCAAGCC TTACATGGCC
AGTTTGCAAA AGGTTTTCCG CACCGGCCAT CCGCAGGAAC ATTACAATGC CTTTCCCACA
CCGGACGGGG AATTGACCTT CTATTCACGA ATGGTACCCG AGCGTGGCCC GGACGATTCT
ATCCAGACCG TGCTCGCCAT TGCCCGGGAT ATTACCGACT TGCAGAATGC CCAGCTGCAA
ATCCGGCAGC TTGCCGAAAA CCTGCAAGCT GTGCTAGACG CCTCCCCTGC ATTCATTGCA
TTGCTCAAAG CGGTCCGTAA AGACGGCTCG CCCGACGAGG TCGTTGATTT TACACTCGTC
GTAGGCAACC AGAAACTATC AACATTTTTA GGTAAACCAC TCGAAGAACT GCTTGGCAGT
CCGGCAAGCC TATTCGAGCG ACTGCTGTGG GGGCCTGAGA CGCTGGAAAA TCTGCGCGAA
ATTTACCTAT CATAG
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| Protein sequence | MYPESGMAYV VILHLSPDYE SHLANVLRQV AQIPVVKVEE DMSIATDHIY VVSPNQHLRM
LDGTITVSQN MHIEDRRAPV DIFFRTLAES HGPHAIAVVL SGTGANGSMG VKRIKENGGA
IFVQNPKEAL FNEMPRHTIA TDLVDGILSA SEIPARLREY RDSLHTVSIP AEARMRPEEQ
QQALREIFTH LRLRTGHDFS NYKRPTLMRR LERRISVRNL DGLPAYAGYL RENPEESRAL
LKDLLISVTN FFRDGRVFSA LEEDILPRLI RERKSDESIR IWVTACATGE EAYSIAMLMA
ELTFGVIDAP KVQIFATDID EGAIITAREG KYTINDAADI SPERLQRFFV REGDEYRVRQ
EIREMILFAH QNVLKDPPFS RLDLVTCRNL LIYLNQAAQE RVMETFHFAL KPGGYLMLGL
SETTDSAGDL FANISREYHI YQSRPVAIRP YPVPENTPLA IPQKRHEPVA VSSSESRHLS
ERANFGDLHH QLIEQYAPPS IIVNEEYDIL HLSGKAGRYV HIFGEPSKNL LKLVRPELRL
ELRTALYQAV QRQTNVEARN LRVQIEDKTE VINLHVRPVV EDGSQSRNNP AQGLILVLFE
PTDTPEGPIK SVLTSEEPMA QQLEAELMHV RTQLRSAVEQ HETQAEELKA SNEELQAMNE
ELRSAAEELE TSKEELQSIN EELTTVNQEL KVKVEEISMT SNNFQNLINS TDLATLFLDR
SLRVNLFTPA ARSIFNLIPT DSGRPLSDIT NSLDYSGLQE DARKVLETLL PVEREVQTHD
QRVFLTRILP YRTAEDRING IVLTFVDITR RKAAEEAVRR SEERMRLVFE SAKDYAILTL
DLKRQVTSWS PGAQAMTGFT EADILGQPGD ILFTPEDQES GQPALEEKIA RENGHAENER
WHVRKDGSRY WGSGSMSPLK DDDGKVLGWV KIMRDLTERR AAEEARSFLA AIVESSQDSI
MTVNFDGIIT SWNKAAEDLY GYSAAQAIGK PLTMLTLPED LARVLSDTDK IKHSQRVEIF
DTIRVNKDGR EMHLEVVMSP VKDASGRPIG VSTIARDITM RKLAEHEQAL KNLTLQQQTE
SMARTGSWEY DRITGNFSWS EGMYQLFGLP IGKPVQPDVY LQKTVRPDQH IAEAFIEWLE
SGEQAFEQVL RIHHLETVKY LKIKGVPLPS QDEVSQKMLG IDWDITDHIL AQEQLRQSEA
QLRTLVENTP DVITRWDSDL RLIFANNAFV VKTGQQLEDL LGKNNIQMGQ PDDIAKPYMA
SLQKVFRTGH PQEHYNAFPT PDGELTFYSR MVPERGPDDS IQTVLAIARD ITDLQNAQLQ
IRQLAENLQA VLDASPAFIA LLKAVRKDGS PDEVVDFTLV VGNQKLSTFL GKPLEELLGS
PASLFERLLW GPETLENLRE IYLS
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