| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_1716 |
|---|
| Symbol | |
|---|
| ID | 4710200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | - |
|---|
| Start bp | 1879790 |
|---|
| End bp | 1882360 |
|---|
| Gene Length | 2571 bp |
|---|
| Protein Length | 856 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639856184 |
|---|
| Product | MCP methyltransferase, CheR-type |
|---|
| Protein accession | YP_001003282 |
|---|
| Protein GI | 121998495 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins
[COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.92135 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCCAC CGACTGACCG CCGCCCACTG GACCCCTTAC CGATCCCGAT CGTAGCGATC
GGCGGGTCGG CTGGATCCCT CAAGCCCCTG CAGGCTTTCC TGGCCCACCT GCCGACGGAC
TCGGGGGCAG CCTACGTCAT CATCACTCAC CACCCCAGCG GTCAGCGAAG CCTGCTCCCC
GAGATCTTGG AGCGGCAGAC GGAGCTGCCC GTGCAGATGG TCGAAGAGGG GGAGACCCTG
GGCCCGGACC GCATCTACAT TGCCCTGCCG GAGGACGGCT GGGCCCTCCG GCAGGGGCAG
CTGATCCGGT CGCGAGCAAC GGAAACGCGC CCTGGAGGTG GCGCCCCCTA TCCCATTGAT
GCCTTTTTCC GCTCCCTCGC CGAGGAGGCG GGACAGGGTG GACTGGCCGT TGTCCTGTCC
GGCACGGGTA GTGACGGCAC CCTTGGGGTC AAGGCCATCA AGTCCCAGTC GGGCATGGTT
ATGGCTCAGG ATCCGAAGAC CGCTGAGTTC GGCGACATGC CGGCCAATGC CATCGCCACG
GGGCAGGTGG ACTACGTGCT AGCCCCGGCG GATATGCCTG CGACCCTGGT CGGTTATCTC
GGGGCCCGCA GCGAGCGCCA GGGTGCGCCG TCGAGTCGTC GCCGCACGAT CCCCGAAGAG
GTTCTGGGCC CGATCCTTCG ACAAGTCAGG CACTGCACCG GTCACGATTT CTCGGGTTAC
AAGACCAGCA CGCTCGAGCG GCGCCTGGAG CGGCGCATGG ACCTCTTGCA GATTTCCGAT
CCGCGCGCCT ACTCGATCCA CCTGCAGTCC CATCCCGAGG AACTCAACCG CCTGTTCCAG
GATTTCCTGA TCAGTGTCAC CAATTTCTTC CGGGATCCCC GGGCCTGGGC CACCCTGTCG
GAGGAACTGC TACCAGGCAT GCTGCGGCGA GCCGCGCACA GGGGGGGCGA GTTCCGGGCC
TGGGTGGTGG GCTGTGCCAC CGGCGAGGAG GCCTACACCC TGGCCATTCT CATCCGGGAA
TGCCTAGCGG ATTGGGAACA GGCCCCGGAG GTGCGGATCT TCGCCACCGA TGTCGATCAG
GCTGCCATCG AGACGGCCCG AGTGGGGCGT TATCCGGCCG GCATTGCCGA CGACCTCACC
CACCAGCGTT TGCGGAGGTA TTTCGCCGCT GAGAACGATA CCTACCGGAT CGTCCGGGAA
GTGCGGGACA TGGTGATCTT TGCCGACCAC AATGCGCTGC AGGATCCGCC GTTCACCCAC
ATGGATCTGA TAACCTGCCG TAACCTTCTG ATTTACCTGG AACGGGACCA TCAGATGCGC
CTCCTGGCCC TGTTCCGCTA CGCCCTGCGT GACCGCGGGC TCCTCTTCCT GGGGCCTTCC
GAGAGTCCGG ATCAGGCGAG CGAAGCCTTC GAGGTTGAGG CCAAAGAGGA TCGGATCTAC
CGGGTGGCCG AAGATGCGGC ACGGACCAAC CTGCTTGACA TGCCCGGACC CCGCCGCTTT
GCGCGCAGCC TGCCGGTGCA GAGTACAGCC GCGCCCGCGG CGAACAGTGA CGGGGAGGGT
TTCTCCCACC ACGTGGAACG TCTCCTTGCC CTGCGGTTTG CGCCACCGTC AGTGGTGGTC
AACGACCGCG GCGAGGTGGC GTACATCCAC GGGCGCACCG GTCGCTTCCT GGAGCCCGCT
CACGGCCCGG TCCAGAACCA ACTGGTGGAG ATGGCGCGGC CCGGGCTGCG GGCTCCGCTG
AGCCAAGCCC TGGAGGAGGT GGCGCGTGGC CGGGCAGAAG AGGTGGGCCA GAGGGTTCAG
ATCCAGACCG ACGATGATGC CGATCCGGAG TGGCTCCGGT TTGAAGTCCG CCGCATCCAC
ACGCCTGCCG CCTTGAAGGG GTTTCGCCTC GTGACCTTGT ATTCGGAGGC GGGTACGGAG
GTGGCGTCCC TTGGGGTGGA GCTTGAGCCG AGATCCGAGT CGGAGGCGGA GTCCGAGGGT
CCAGGGACTG AGGCCGAGCG GCGTTTGAGG CGAGAGCTGG AAAACGCCCG CCAGGATAAG
CAGGTAGCGG TCAATGAGAT GCAGTCTACC AATGAAGAGC TCCAATCCAT GAATGAGGAG
CTTCAGTCGA TGAATGAGGA GCTCCAGAGC AGCAACGAGG AACTGGAGGT CGCCAAGGAG
GAGGTGGAGT CGCTCAACCA AGAGCTGCGC AGCGTCAACG CCGAACTCCA GGTCCGGGTG
GACGACCTGA CCGAGACCAA CGACGACCTC AAGAACCTTC TGGACAGCAC GCACATCGCT
ACGCTGTTTC TGGACGAAGC CCTGAATATC AAACGCTTTA CGACCCCTGT GCAGGAGCTG
ATCGCCGTGC GCCCGGCGGA CATCGGCCGG CCGGTGGCCG ATCTGAAGAC CAGCTTGCGG
TATGACGGCC TAGTGGCGGA TGCCGAGTCC GTTCTCGACA CCCTGATCCC CCACGAGGTG
CAGGTGCAGT CCGATGGCGG CGATTGGTAT CTGCTGCGCA TCCAGCCCTA CCGCAGTACG
CGGAACGTGA TCCGCGGGGT GGTCTGCACC TTCCAGTCTG CTTGCACCTG A
|
|---|
| Protein sequence | MPPPTDRRPL DPLPIPIVAI GGSAGSLKPL QAFLAHLPTD SGAAYVIITH HPSGQRSLLP
EILERQTELP VQMVEEGETL GPDRIYIALP EDGWALRQGQ LIRSRATETR PGGGAPYPID
AFFRSLAEEA GQGGLAVVLS GTGSDGTLGV KAIKSQSGMV MAQDPKTAEF GDMPANAIAT
GQVDYVLAPA DMPATLVGYL GARSERQGAP SSRRRTIPEE VLGPILRQVR HCTGHDFSGY
KTSTLERRLE RRMDLLQISD PRAYSIHLQS HPEELNRLFQ DFLISVTNFF RDPRAWATLS
EELLPGMLRR AAHRGGEFRA WVVGCATGEE AYTLAILIRE CLADWEQAPE VRIFATDVDQ
AAIETARVGR YPAGIADDLT HQRLRRYFAA ENDTYRIVRE VRDMVIFADH NALQDPPFTH
MDLITCRNLL IYLERDHQMR LLALFRYALR DRGLLFLGPS ESPDQASEAF EVEAKEDRIY
RVAEDAARTN LLDMPGPRRF ARSLPVQSTA APAANSDGEG FSHHVERLLA LRFAPPSVVV
NDRGEVAYIH GRTGRFLEPA HGPVQNQLVE MARPGLRAPL SQALEEVARG RAEEVGQRVQ
IQTDDDADPE WLRFEVRRIH TPAALKGFRL VTLYSEAGTE VASLGVELEP RSESEAESEG
PGTEAERRLR RELENARQDK QVAVNEMQST NEELQSMNEE LQSMNEELQS SNEELEVAKE
EVESLNQELR SVNAELQVRV DDLTETNDDL KNLLDSTHIA TLFLDEALNI KRFTTPVQEL
IAVRPADIGR PVADLKTSLR YDGLVADAES VLDTLIPHEV QVQSDGGDWY LLRIQPYRST
RNVIRGVVCT FQSACT
|
|---|
| |